Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021946 Camellia sinensis var. sinensis HOM05D063414 ORTHO05D022140 2.1e-97 359.0 181 100.0
CSS0045004 Camellia sinensis var. sinensis HOM05D063414 ORTHO05D022140 2.0e-87 325.9 181 92.3
Dinv05333 Davidia involucrata HOM05D000191 ORTHO05D000122 2.2e-33 146.4 174 50.6
vmacro12052 Vaccinium macrocarpon HOM05D000191 ORTHO05D000122 2.2e-33 146.4 169 57.4
Rhsim06G0179700 Rhododendron simsii HOM05D000191 ORTHO05D000122 1.6e-31 140.2 163 54.6
Actinidia12349 Actinidia chinensis HOM05D000191 ORTHO05D000122 3.9e-30 135.6 174 54.6
PGSC0003DMG400017389 Solanum tuberosum HOM05D000191 ORTHO05D000122 1.1e-21 107.5 180 45.0
Solyc07g045120.2 Solanum lycopersicum HOM05D000191 ORTHO05D000122 5.6e-21 105.1 180 47.2
Rhsim06G0180200 Rhododendron simsii HOM05D000191 ORTHO05D000122 2.1e-20 103.2 121 53.7
Peaxi162Scf00581g00051 Petunia axillaris HOM05D000191 ORTHO05D000122 1.8e-19 100.1 178 43.3
Cc05_g01800 Coffea canephora HOM05D000191 ORTHO05D000122 4.4e-18 95.5 182 39.6
CAN.G1214.4 Capsicum annuum HOM05D000191 ORTHO05D000122 2.2e-17 93.2 188 38.3
Cc02_g31440 Coffea canephora HOM05D000191 ORTHO05D000122 3.7e-17 92.4 178 40.4
Oeu056855.1 Olea europaea HOM05D000191 ORTHO05D000122 3.7e-17 92.4 175 41.7
Solyc05g016320.2 Solanum lycopersicum HOM05D000191 ORTHO05D000122 1.4e-16 90.5 202 36.6
Manes.12G067302 Manihot esculenta HOM05D000191 ORTHO05D000122 3.2e-16 89.4 178 43.3
FAN27G2837 Fragaria x ananassa HOM05D000191 ORTHO05D002546 1.6e-15 87.0 182 40.7
Nn1g07589 Nelumbo nucifera HOM05D000191 ORTHO05D000122 2.7e-15 86.3 162 36.4
Nitab4.5_0005601g0010 Nicotiana tabacum HOM05D000191 ORTHO05D000122 2.7e-15 86.3 184 37.5
Sopen07g023670 Solanum pennellii HOM05D000191 ORTHO05D000122 4.6e-15 85.5 142 47.9
Potri.014G171100 Populus trichocarpa HOM05D000191 ORTHO05D000122 1.3e-14 84.0 158 42.4
Migut.M00061 Erythranthe guttata HOM05D000191 ORTHO05D000122 2.3e-14 83.2 174 36.2
FAN20G2424 Fragaria x ananassa HOM05D000191 ORTHO05D000122 5.1e-14 82.0 165 40.0
Duzib211G0119 Durio zibethinus HOM05D000191 ORTHO05D000122 8.6e-14 81.3 174 39.1
Prupe.8G004600 Prunus persica HOM05D000191 ORTHO05D000122 1.9e-13 80.1 188 35.6
PGR031G2248 Punica granatum HOM05D000191 ORTHO05D000122 2.5e-13 79.7 167 39.5
PGR031G0066 Punica granatum HOM05D000191 ORTHO05D000122 3.3e-13 79.3 166 39.2
Ciclev10017948m.g Citrus clementina HOM05D000191 ORTHO05D000122 4.3e-13 79.0 150 37.3
Gohir.D11G154300 Gossypium hirsutum HOM05D000191 ORTHO05D000122 4.3e-13 79.0 153 39.9
GSVIVG01030134001 Vitis vinifera HOM05D000191 ORTHO05D000122 5.6e-13 78.6 54 74.1
Gorai.007G164400 Gossypium raimondii HOM05D000191 ORTHO05D000122 7.3e-13 78.2 153 39.9
Thecc.01G200800 Theobroma cacao HOM05D000191 ORTHO05D000122 9.6e-13 77.8 206 33.5
Sopen05g013240 Solanum pennellii HOM05D000191 ORTHO05D000122 2.8e-12 76.3 156 36.5
MD10G1002900 Malus domestica HOM05D000191 ORTHO05D000122 3.6e-12 75.9 188 38.3
SGA_v2.0_scaffold73G24487 Striga asiatica HOM05D000191 ORTHO05D000122 3.6e-12 75.9 176 39.2
TAR627G0915 Trochodendron aralioides HOM05D000191 ORTHO05D000122 6.2e-12 75.1 72 59.7
Gohir.A11G147400 Gossypium hirsutum HOM05D000191 ORTHO05D000122 8.1e-12 74.7 165 38.8
FvH4_2g00470 Fragaria vesca HOM05D000191 ORTHO05D000122 1.1e-11 74.3 89 50.6
FAN24G1610 Fragaria x ananassa HOM05D000191 ORTHO05D002546 1.1e-11 74.3 89 50.6
Cfa008051 Carpinus fangiana HOM05D000191 ORTHO05D000122 1.8e-11 73.6 168 36.3
ClCG08G001500 Citrullus lanatus HOM05D000191 ORTHO05D002546 2.4e-11 73.2 162 36.4
Dinv37372 Davidia involucrata HOM05D000191 ORTHO05D000122 5.2e-11 72.0 205 32.2
PGSC0003DMG400017704 Solanum tuberosum HOM05D000191 ORTHO05D000122 5.2e-11 72.0 52 71.2
Eucgr.A01382 Eucalyptus grandis HOM05D000191 ORTHO05D000122 6.8e-11 71.6 167 37.1
Haze_13974 Corylus avellana HOM05D000191 ORTHO05D000122 8.9e-11 71.2 168 33.9
RcHm_v2.0_Chr6g0250461 Rosa chinensis HOM05D000191 ORTHO05D000122 8.9e-11 71.2 115 43.5
TWI18G0504 Tripterygium wilfordii HOM05D000191 ORTHO05D000122 8.9e-11 71.2 179 36.9
Gohir.D07G169400 Gossypium hirsutum HOM05D000191 ORTHO05D000122 1.5e-10 70.5 177 37.3
Sed0017218 Sechium edule HOM05D000191 ORTHO05D002546 2.6e-10 69.7 139 40.3
Gorai.001G189500 Gossypium raimondii HOM05D000191 ORTHO05D000122 3.4e-10 69.3 177 37.3
Lj1A801T71 Lonicera japonica HOM05D000191 ORTHO05D022140 5.8e-10 68.6 54 64.8
MD05G1001700 Malus domestica HOM05D000191 ORTHO05D000122 5.8e-10 68.6 67 59.7
Eucgr.A01384 Eucalyptus grandis HOM05D000191 ORTHO05D000122 3.8e-09 65.9 73 53.4
Prupe.4G281300 Prunus persica HOM05D000191 ORTHO05D000122 3.8e-09 65.9 123 39.0
QL10p038817 Quercus lobata HOM05D000191 ORTHO05D000122 4.9e-09 65.5 53 66.0
Atru.chr6.3441 Acer truncatum HOM05D000191 ORTHO05D000122 8.4e-09 64.7 55 61.8
Gohir.A07G162800 Gossypium hirsutum HOM05D000191 ORTHO05D000122 8.4e-09 64.7 181 33.7
Atru.chr6.3440 Acer truncatum HOM05D000191 ORTHO05D000122 1.1e-08 64.3 54 61.1
DCAR_008753 Daucus carota HOM05D000191 ORTHO05D000122 1.4e-08 63.9 162 32.7
CsaV3_5G039600 Cucumis sativus L. HOM05D000191 ORTHO05D002546 2.4e-08 63.2 78 47.4
TAR623G0237 Trochodendron aralioides HOM05D000191 ORTHO05D000122 3.2e-08 62.8 184 32.6
Cfa016501 Carpinus fangiana HOM05D000191 ORTHO05D000122 7.1e-08 61.6 198 32.3
Phvul.009G157700 Phaseolus vulgaris HOM05D000191 ORTHO05D000122 9.3e-08 61.2 53 64.2
CiPaw.04G178700 Carya illinoinensis HOM05D000191 ORTHO05D000122 1.6e-07 60.5 73 49.3
Glyma.04G205502 Glycine max HOM05D000191 ORTHO05D022140 1.6e-07 60.5 53 66.0
MD15G1138300 Malus domestica HOM05D000191 ORTHO05D000122 2.1e-07 60.1 51 62.7
VMungo1309G0294 Vigna mungo HOM05D000191 ORTHO05D000122 2.7e-07 59.7 50 68.0
Aqoxy4G02314 Aquilegia oxysepala HOM05D000191 ORTHO05D000122 4.6e-07 58.9 168 33.3
DCAR_012743 Daucus carota HOM05D000191 ORTHO05D000122 4.6e-07 58.9 55 56.4
Medtr3g097310 Medicago truncatula HOM05D000191 ORTHO05D000122 4.6e-07 58.9 128 35.2
TWI77G0461 Tripterygium wilfordii HOM05D000191 ORTHO05D000122 6.0e-07 58.5 109 39.4
MELO3C022137.2 Cucumis melo HOM05D000191 ORTHO05D002546 7.8e-07 58.2 82 45.1
QL09p001444 Quercus lobata HOM05D000191 ORTHO05D000122 7.8e-07 58.2 176 32.4
Sed0018766 Sechium edule HOM05D002356 ORTHO05D000122 7.8e-07 58.2 146 35.6
Thecc.01G200700 Theobroma cacao HOM05D000191 ORTHO05D000122 7.8e-07 58.2 156 34.0
MD15G1138400 Malus domestica HOM05D000191 ORTHO05D000122 1.0e-06 57.8 51 58.8
Nitab4.5_0000006g0500 Nicotiana tabacum HOM05D000191 ORTHO05D000122 1.0e-06 57.8 68 52.9
Cfa016503 Carpinus fangiana HOM05D000191 ORTHO05D000122 1.3e-06 57.4 198 31.8
CDE02G3674 Ceratophyllum demersum HOM05D000191 ORTHO05D000122 1.7e-06 57.0 177 34.5
CDE06G0187 Ceratophyllum demersum HOM05D000191 ORTHO05D000122 1.7e-06 57.0 71 49.3
Glyma.06G160000 Glycine max HOM05D000191 ORTHO05D000122 1.7e-06 57.0 53 64.2
MBI01_g24439_MAGBIO Magnolia biondii HOM05D000191 ORTHO05D000122 1.7e-06 57.0 55 52.7
Sc20g0003110 Simmondsia chinensis HOM05D000191 ORTHO05D000122 1.7e-06 57.0 57 54.4
PGR142G1805 Punica granatum HOM05D000191 ORTHO05D000122 3.0e-06 56.2 58 56.9
CDE06G2183 Ceratophyllum demersum HOM05D000191 ORTHO05D000122 6.6e-06 55.1 165 35.2
Potri.014G170900 Populus trichocarpa HOM05D000191 ORTHO05D000122 6.6e-06 55.1 50 60.0
Haze_19504 Corylus avellana HOM05D000191 ORTHO05D000122 8.7e-06 54.7 204 29.4
MELO3C024503.2 Cucumis melo HOM05D000191 ORTHO05D000122 8.7e-06 54.7 117 37.6


User provided reference genes

Program Settings