Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021935 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004993 0.0e+00 1238.4 652 100.0
Rhsim10G0172400 Rhododendron simsii HOM05D000141 ORTHO05D004993 0.0e+00 1092.4 659 88.2
vmacro13004 Vaccinium macrocarpon HOM05D000141 ORTHO05D004993 0.0e+00 1076.6 653 88.2
CSS0023880 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004993 1.9e-305 1052.0 594 95.1
Atru.chr3.1257 Acer truncatum HOM05D000141 ORTHO05D004993 2.3e-303 1045.0 651 85.3
Dinv13609 Davidia involucrata HOM05D000141 ORTHO05D004993 6.0e-299 1030.4 640 87.0
Cpa.g.sc55.32 Carica papaya HOM05D000141 ORTHO05D004993 8.1e-296 1020.0 653 83.3
Potri.007G010700 Populus trichocarpa HOM05D000141 ORTHO05D004993 5.2e-295 1017.3 651 83.4
CiPaw.07G048100 Carya illinoinensis HOM05D000141 ORTHO05D004993 2.0e-294 1015.4 653 83.5
Ciclev10024724m.g Citrus clementina HOM05D000141 ORTHO05D004993 5.8e-294 1013.8 651 82.5
Manes.12G126900 Manihot esculenta HOM05D000141 ORTHO05D004993 5.8e-294 1013.8 651 82.9
TWI77G1015 Tripterygium wilfordii HOM05D000141 ORTHO05D004993 2.2e-293 1011.9 651 83.9
Thecc.01G091400 Theobroma cacao HOM05D000141 ORTHO05D004993 3.5e-291 1004.6 652 83.6
Cfa006890 Carpinus fangiana HOM05D000141 ORTHO05D004993 1.7e-290 1002.3 652 82.5
Prupe.6G198800 Prunus persica HOM05D000141 ORTHO05D004993 2.3e-290 1001.9 653 81.9
TWI74G0717 Tripterygium wilfordii HOM05D000141 ORTHO05D004993 5.1e-290 1000.7 651 82.9
Eucgr.I00545 Eucalyptus grandis HOM05D000141 ORTHO05D004993 6.6e-290 1000.3 653 82.5
Duzib147G0545 Durio zibethinus HOM05D000141 ORTHO05D004993 4.3e-289 997.7 652 83.3
COL.COLO4_27349 Corchorus olitorius HOM05D000141 ORTHO05D004993 1.2e-288 996.1 654 83.6
Peaxi162Scf00778g00009 Petunia axillaris HOM05D000141 ORTHO05D004993 2.8e-288 995.0 651 81.9
TAR376G1001 Trochodendron aralioides HOM05D000141 ORTHO05D004993 2.4e-287 991.9 654 82.4
MD00G1019700 Malus domestica HOM05D000141 ORTHO05D004993 2.0e-286 988.8 654 81.5
FvH4_1g19720 Fragaria vesca HOM05D000141 ORTHO05D004993 7.6e-286 986.9 653 81.5
FAN28G0107 Fragaria x ananassa HOM05D000141 ORTHO05D004993 2.2e-285 985.3 652 81.1
Phvul.003G289200 Phaseolus vulgaris HOM05D000141 ORTHO05D004993 4.9e-285 984.2 655 81.1
VMungo0251G3517 Vigna mungo HOM05D000141 ORTHO05D004993 4.9e-285 984.2 651 81.0
FAN26G1575 Fragaria x ananassa HOM05D000141 ORTHO05D004993 1.1e-284 983.0 653 81.2
CANSAT54G0158 Cannabis sativa HOM05D000141 ORTHO05D004993 2.4e-284 981.9 651 81.0
RcHm_v2.0_Chr2g0111301 Rosa chinensis HOM05D000141 ORTHO05D004993 2.4e-284 981.9 653 81.3
Glyma.18G146600 Glycine max HOM05D000141 ORTHO05D004993 5.4e-284 980.7 653 80.2
FAN19G2112 Fragaria x ananassa HOM05D000141 ORTHO05D004993 7.1e-284 980.3 653 81.2
Gohir.A11G206600 Gossypium hirsutum HOM05D000141 ORTHO05D004993 1.6e-283 979.2 652 81.7
Gorai.007G233100 Gossypium raimondii HOM05D000141 ORTHO05D004993 1.6e-283 979.2 652 81.7
MBI02_g32604_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004993 1.6e-283 979.2 661 79.7
PGR031G3531 Punica granatum HOM05D000141 ORTHO05D004993 1.6e-283 979.2 652 81.3
Sabra07G0008100 Salix brachista HOM05D000141 ORTHO05D004993 2.7e-283 978.4 735 74.1
Lj4g0027101 Lotus japonicus HOM05D000141 ORTHO05D004993 6.6e-282 973.8 651 80.0
ClCG01G018390 Citrullus lanatus HOM05D000141 ORTHO05D004993 8.7e-282 973.4 653 79.8
Hund14088 Selenicereus undatus HOM05D000141 ORTHO05D004993 8.7e-282 973.4 650 80.8
Migut.K00793 Erythranthe guttata HOM05D000141 ORTHO05D004993 3.3e-281 971.5 654 79.7
Actinidia25312 Actinidia chinensis HOM05D000141 ORTHO05D004993 4.3e-281 971.1 651 82.2
Aqoxy6G01438 Aquilegia oxysepala HOM05D000141 ORTHO05D004993 5.6e-281 970.7 652 79.4
CsaV3_6G045040 Cucumis sativus L. HOM05D000141 ORTHO05D004993 9.6e-281 969.9 653 79.6
Solyc11g010560.3 Solanum lycopersicum HOM05D000141 ORTHO05D004993 4.0e-279 964.5 652 79.4
CAN.G1344.1 Capsicum annuum HOM05D000141 ORTHO05D004993 5.3e-279 964.1 653 78.9
MELO3C007717.2 Cucumis melo HOM05D000141 ORTHO05D004993 9.0e-279 963.4 653 79.3
Glyma.08G279800 Glycine max HOM05D000141 ORTHO05D004993 9.9e-278 959.9 653 78.7
Sopen11g005360 Solanum pennellii HOM05D000141 ORTHO05D004993 4.9e-277 957.6 654 79.1
Medtr8g471180 Medicago truncatula HOM05D000141 ORTHO05D004993 1.2e-275 953.0 662 78.4
Sed0001145 Sechium edule HOM05D000141 ORTHO05D004993 4.6e-275 951.0 653 78.6
PSO675G5554 Papaver somniferum HOM05D000141 ORTHO05D004993 6.0e-275 950.7 652 79.4
Glyma.02G041400 Glycine max HOM05D000141 ORTHO05D004993 1.0e-274 949.9 653 78.3
Glyma.01G023600 Glycine max HOM05D000141 ORTHO05D004993 1.3e-274 949.5 653 78.4
MSTRG.15690 Avicennia marina HOM05D000141 ORTHO05D004993 3.9e-274 948.0 653 79.2
SalBow5G1291 Salvia bowleyana HOM05D000141 ORTHO05D004993 5.1e-274 947.6 681 76.5
TPR.G14602 Trifolium pratense HOM05D000141 ORTHO05D004993 6.6e-274 947.2 655 78.9
arahy.Tifrunner.gnm1.ann1.46GERB Arachis hypogaea HOM05D000141 ORTHO05D004993 1.5e-273 946.0 647 78.5
Phvul.002G147700 Phaseolus vulgaris HOM05D000141 ORTHO05D004993 1.9e-273 945.7 651 78.6
arahy.Tifrunner.gnm1.ann1.029WE6 Arachis hypogaea HOM05D000141 ORTHO05D004993 2.5e-273 945.3 647 78.5
Ca_22599_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004993 2.8e-272 941.8 659 77.2
Lalb_Chr05g0228501 Lupinus albus HOM05D000141 ORTHO05D004993 1.8e-271 939.1 652 77.3
EL10Ac6g15211 Beta vulgaris HOM05D000141 ORTHO05D004993 5.3e-271 937.6 652 78.1
PSO541G3987 Papaver somniferum HOM05D000141 ORTHO05D004993 4.5e-270 934.5 652 78.1
AUR62003657 Chenopodium quinoa HOM05D000141 ORTHO05D004993 5.8e-270 934.1 652 77.0
Lalb_Chr05g0216301 Lupinus albus HOM05D000141 ORTHO05D004993 5.8e-270 934.1 653 75.8
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 1.3e-269 932.9 637 78.5
THA.LOC104801691 Tarenaya hassleriana HOM05D000141 ORTHO05D004993 7.4e-265 917.1 651 77.3
arahy.Tifrunner.gnm1.ann1.52WN7P Arachis hypogaea HOM05D000141 ORTHO05D004993 2.1e-264 915.6 650 75.7
arahy.Tifrunner.gnm1.ann1.5SKZ26 Arachis hypogaea HOM05D000141 ORTHO05D004993 2.1e-264 915.6 650 75.7
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 1.1e-263 913.3 645 77.2
Lsat_1_v5_gn_3_61481 Lactuca sativa HOM05D000141 ORTHO05D004993 3.1e-263 911.8 657 75.8
ATR0665G420 Amborella trichopoda HOM05D000141 ORTHO05D004993 1.2e-262 909.8 650 75.7
SGA_v2.0_scaffold45G17236 Striga asiatica HOM05D000141 ORTHO05D004993 2.0e-262 909.1 604 80.1
AUR62017965 Chenopodium quinoa HOM05D000141 ORTHO05D004993 1.3e-261 906.4 645 75.7
DCAR_003449 Daucus carota HOM05D000141 ORTHO05D004993 2.2e-261 905.6 652 76.1
AT5G65460 Arabidopsis thaliana HOM05D000141 ORTHO05D004993 1.9e-260 902.5 651 76.2
Sp2g28540 Schrenkiella parvula HOM05D000141 ORTHO05D004993 7.1e-260 900.6 651 75.9
AL8G43040 Arabidopsis lyrata HOM05D000141 ORTHO05D004993 9.3e-260 900.2 651 76.0
A06p32290 Brassica napus HOM05D000141 ORTHO05D004993 1.6e-259 899.4 649 75.7
BraA06t26155Z Brassica rapa HOM05D000141 ORTHO05D004993 1.6e-259 899.4 649 75.7
HanXRQChr13g0405071 Helianthus annuus HOM05D000141 ORTHO05D004993 2.7e-259 898.7 652 76.5
C03p60620 Brassica napus HOM05D000141 ORTHO05D004993 3.5e-259 898.3 649 75.7
Carub.0008s2631 Capsella rubella HOM05D000141 ORTHO05D004993 5.7e-257 891.0 651 74.7
BolC3t18317H Brassica oleracea HOM05D000141 ORTHO05D004993 2.8e-256 888.6 649 75.0
Lj2C535G3 Lonicera japonica HOM05D000141 ORTHO05D004993 1.4e-255 886.3 584 82.0
Aa31LG1G16550 Aethionema arabicum HOM05D000141 ORTHO05D004993 6.9e-255 884.0 651 74.3
Zm00001eb372980 Zea mays HOM05D000141 ORTHO05D004993 1.0e-253 880.2 652 72.5
Thhalv10012459m.g Eutrema salsugineum HOM05D000141 ORTHO05D004993 6.5e-253 877.5 645 73.8
CARHR279440 Cardamine hirsuta HOM05D000141 ORTHO05D004993 8.4e-253 877.1 653 74.0
Ah.03g140120 Amaranthus hybridus HOM05D000141 ORTHO05D004993 1.6e-251 872.8 702 69.5
AL6G20990 Arabidopsis lyrata HOM05D000141 ORTHO05D004993 2.1e-251 872.5 644 73.9
THA.LOC104819293 Tarenaya hassleriana HOM05D000141 ORTHO05D004993 3.5e-251 871.7 663 73.2
Carub.0006s0895 Capsella rubella HOM05D000141 ORTHO05D004993 8.7e-250 867.1 644 73.8
AT5G10470 Arabidopsis thaliana HOM05D000141 ORTHO05D004993 1.1e-249 866.7 644 72.8
Sp6g32970 Schrenkiella parvula HOM05D000141 ORTHO05D004993 1.1e-249 866.7 645 73.8
BcaB01g06283 Brassica carinata HOM05D000141 ORTHO05D004993 9.0e-247 857.1 645 71.9
BraA03t09798Z Brassica rapa HOM05D000141 ORTHO05D004993 1.2e-246 856.7 645 72.2
CARHR202820 Cardamine hirsuta HOM05D000141 ORTHO05D004993 2.0e-246 855.9 645 73.3
CDE10G0963 Ceratophyllum demersum HOM05D000141 ORTHO05D004993 2.0e-246 855.9 652 71.5
C03p05120 Brassica napus HOM05D000141 ORTHO05D004993 2.6e-246 855.5 645 71.9
QL06p035637 Quercus lobata HOM05D000141 ORTHO05D004993 2.6e-246 855.5 535 85.6
BcaB01g05532 Brassica carinata HOM05D000141 ORTHO05D004993 3.4e-246 855.1 645 71.9
A03p04560 Brassica napus HOM05D000141 ORTHO05D004993 3.4e-246 855.1 645 72.1
Aa31LG3G16690 Aethionema arabicum HOM05D000141 ORTHO05D004993 1.1e-241 840.1 653 71.8
DCAR_016619 Daucus carota HOM05D000141 ORTHO05D004993 4.3e-241 838.2 652 71.0
CDE10G0717 Ceratophyllum demersum HOM05D000141 ORTHO05D004993 2.0e-238 829.3 652 70.2
Eucgr.I00476 Eucalyptus grandis HOM05D000141 ORTHO05D004993 1.6e-235 819.7 610 75.2
unitig_748.g7037 Utricularia gibba HOM05D000141 ORTHO05D004993 2.7e-235 818.9 639 70.9
Psat4g119320 Pisum sativum HOM05D000141 ORTHO05D004993 1.1e-231 807.0 651 70.7
HPP92_005965 Vanilla planifolia HOM05D000141 ORTHO05D004993 1.9e-220 769.6 551 75.7
unitig_0.g1718 Utricularia gibba HOM05D000141 ORTHO05D004993 4.2e-212 741.9 566 72.6
Gohir.D11G217000 Gossypium hirsutum HOM05D000141 ORTHO05D004993 1.6e-211 740.0 502 81.3
Dinv36920 Davidia involucrata HOM05D000141 ORTHO05D004993 4.0e-210 735.3 502 81.5
FAN23G0308 Fragaria x ananassa HOM05D000404 ORTHO05D004993 2.5e-196 689.5 494 77.1
FAN23G1526 Fragaria x ananassa HOM05D000141 ORTHO05D004993 3.3e-196 689.1 468 79.9
SMO169G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004993 9.8e-193 677.6 656 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4409 Anthoceros agrestis HOM05D000141 ORTHO05D004993 2.4e-191 672.9 664 58.7
SEGI_00023 Sequoiadendron giganteum HOM05D000141 ORTHO05D004993 3.1e-186 656.0 534 66.1
SMO337G0058 Selaginella moellendorffii HOM05D000141 ORTHO05D004993 4.9e-184 648.7 665 56.5
Nitab4.5_0025132g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004993 6.4e-184 648.3 397 85.9
Pp3c4_24010 Physcomitrium patens HOM05D000141 ORTHO05D004993 2.7e-182 642.9 684 54.5
TAR628G0162 Trochodendron aralioides HOM05D000141 ORTHO05D004993 2.3e-173 613.2 402 82.1
Pp3c3_10920 Physcomitrium patens HOM05D000141 ORTHO05D004993 1.6e-171 607.1 676 52.5
Pp3c3_10921 Physcomitrium patens HOM05D000141 ORTHO05D004993 1.6e-171 607.1 677 52.3
Mapoly0022s0156 Marchantia polymorpha HOM05D000141 ORTHO05D004993 6.2e-171 605.1 660 54.1
GSVIVG01005935001 Vitis vinifera HOM05D000141 ORTHO05D004993 2.1e-163 580.1 369 84.0
Haze_03862 Corylus avellana HOM05D000141 ORTHO05D004993 2.7e-158 563.1 370 81.4
Oeu012465.2 Olea europaea HOM05D000141 ORTHO05D004993 2.0e-153 547.0 643 54.3
Thhalv10003525m.g Eutrema salsugineum HOM05D000141 ORTHO05D004993 5.5e-151 538.9 401 74.3
VMungo1215G2324 Vigna mungo HOM05D000141 ORTHO05D004993 6.2e-147 525.4 377 74.5
Haze_03861 Corylus avellana HOM05D000141 ORTHO05D004993 2.6e-129 466.8 284 87.7
GSVIVG01006736001 Vitis vinifera HOM05D000141 ORTHO05D004993 1.7e-128 464.2 283 88.0
VMungo1215G0183 Vigna mungo HOM05D000141 ORTHO05D004993 7.9e-118 428.7 284 81.3
MD15G1313400 Malus domestica HOM05D000141 ORTHO05D004993 1.3e-115 421.4 309 74.8
CBR_g78819 Chara braunii HOM05D000141 ORTHO05D004993 1.5e-100 371.3 643 37.8
Nitab4.5_0004153g0030 Nicotiana tabacum HOM05D000141 ORTHO05D004993 1.6e-97 361.3 252 79.0
Nitab4.5_0001468g0110 Nicotiana tabacum HOM05D000141 ORTHO05D004993 1.6e-94 351.3 252 77.4
Os06g0217600 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004993 2.0e-84 317.8 251 66.1
Dinv36919 Davidia involucrata HOM05D000141 ORTHO05D004993 2.6e-68 264.2 150 91.3
QL10p045557 Quercus lobata HOM05D000141 ORTHO05D004993 3.1e-61 240.7 144 85.4
QL10p044591 Quercus lobata HOM05D006593 ORTHO05D004993 1.5e-60 238.4 144 84.7
MD15G1313600 Malus domestica HOM05D000141 ORTHO05D004993 1.1e-58 232.3 152 77.6
Psat0s1531g0080 Pisum sativum HOM05D000141 ORTHO05D017607 7.8e-57 226.1 344 47.1
Psat0ss29278g0040 Pisum sativum HOM05D000141 ORTHO05D004993 2.7e-49 201.1 200 62.5
Psat0ss29278g0080 Pisum sativum HOM05D000141 ORTHO05D004993 9.6e-47 192.6 200 60.0
Psat6g213040 Pisum sativum HOM05D000141 ORTHO05D004993 9.6e-47 192.6 144 77.8
PGSC0003DMG400031414 Solanum tuberosum HOM05D000141 ORTHO05D004993 1.6e-46 191.8 114 85.1
MD15G1313500 Malus domestica HOM05D000141 ORTHO05D017607 3.6e-46 190.7 119 85.7
SHI12213 Sapria himalayana HOM05D000141 ORTHO05D004993 5.3e-37 160.2 133 65.4
Lsat_1_v5_gn_1_89581 Lactuca sativa HOM05D000041 ORTHO05D000452 5.8e-36 156.8 125 63.2
TPR.G36254 Trifolium pratense HOM05D000141 ORTHO05D004993 8.2e-30 136.3 107 76.6
CBR_g8597 Chara braunii HOM05D000141 ORTHO05D004993 4.0e-29 134.0 276 35.5
COL.COLO4_22337 Corchorus olitorius HOM05D000141 ORTHO05D004993 9.3e-26 122.9 105 65.7
HanXRQChr11g0343651 Helianthus annuus HOM05D001440 ORTHO05D001119 9.7e-23 112.8 74 77.0
Lj2A535G40 Lonicera japonica HOM05D000141 ORTHO05D004993 1.4e-21 109.0 59 94.9
BolC6t38880H Brassica oleracea HOM05D000141 ORTHO05D017607 1.5e-15 89.0 66 71.2
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 3.3e-15 87.8 74 66.2
BcaC08g45984 Brassica carinata HOM05D000141 ORTHO05D017607 1.1e-13 82.8 61 73.8
CAN.G1724.1 Capsicum annuum HOM05D000141 ORTHO05D004993 2.4e-13 81.6 54 74.1
SEGI_40086 Sequoiadendron giganteum HOM05D000141 ORTHO05D004993 5.3e-13 80.5 52 71.2
C06p37770 Brassica napus HOM05D000141 ORTHO05D017607 1.0e-11 76.3 58 74.1
A04p04820 Brassica napus HOM05D000141 ORTHO05D017607 2.9e-11 74.7 92 53.3
A09p34930 Brassica napus HOM05D000141 ORTHO05D017607 2.9e-11 74.7 56 75.0
A09p55270 Brassica napus HOM05D000141 ORTHO05D017607 2.9e-11 74.7 56 75.0
HPP92_005964 Vanilla planifolia HOM05D000141 ORTHO05D004993 3.8e-11 74.3 59 64.4
Eucgr.J00708 Eucalyptus grandis HOM05D000329 ORTHO05D045324 6.5e-11 73.6 62 72.6
Eucgr.J00931 Eucalyptus grandis HOM05D000329 ORTHO05D045324 1.2e-09 69.3 60 71.7
C03p78970 Brassica napus HOM05D000141 ORTHO05D017607 1.0e-08 66.2 66 63.6
MBI15_g27814_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D001420 1.7e-06 58.9 34 91.2


User provided reference genes

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