Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021924 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 8.8e-81 303.5 149 100.0
CSS0006845 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 5.2e-57 224.6 144 81.2
CSS0020021 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 1.3e-39 166.8 144 65.3
CSS0034121 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 1.3e-39 166.8 144 65.3
Actinidia02536 Actinidia chinensis HOM05D002770 ORTHO05D003011 1.5e-35 153.3 144 61.1
Rhsim02G0072000 Rhododendron simsii HOM05D002770 ORTHO05D003011 2.0e-32 142.9 144 55.6
TWI73G0971 Tripterygium wilfordii HOM05D002770 ORTHO05D003011 3.8e-31 138.7 144 52.8
GSVIVG01017694001 Vitis vinifera HOM05D002770 ORTHO05D003011 3.8e-31 138.7 142 52.1
Prupe.1G104600 Prunus persica HOM05D002770 ORTHO05D003011 7.1e-30 134.4 144 52.1
Thecc.04G313600 Theobroma cacao HOM05D002770 ORTHO05D003011 2.1e-29 132.9 144 50.0
Sabra10G0002200 Salix brachista HOM05D002770 ORTHO05D003011 3.5e-29 132.1 143 49.7
MD13G1140500 Malus domestica HOM05D002770 ORTHO05D003011 1.0e-28 130.6 144 50.7
Manes.03G212100 Manihot esculenta HOM05D002770 ORTHO05D003011 1.3e-28 130.2 142 47.9
Potri.010G002800 Populus trichocarpa HOM05D002770 ORTHO05D003011 1.7e-28 129.8 144 49.3
Cfa015736 Carpinus fangiana HOM05D002770 ORTHO05D003011 2.3e-28 129.4 144 50.7
Gohir.A12G148900 Gossypium hirsutum HOM05D002770 ORTHO05D003011 6.6e-28 127.9 144 49.3
TAR365G0012 Trochodendron aralioides HOM05D002770 ORTHO05D003011 6.6e-28 127.9 145 51.7
Haze_00760 Corylus avellana HOM05D002770 ORTHO05D003011 8.7e-28 127.5 142 50.7
Gohir.A06G180900 Gossypium hirsutum HOM05D002770 ORTHO05D003011 8.7e-28 127.5 144 48.6
FAN07G2694 Fragaria x ananassa HOM05D002770 ORTHO05D003011 1.1e-27 127.1 144 49.3
Lj6C702G8 Lonicera japonica HOM05D002770 ORTHO05D003011 1.1e-27 127.1 145 51.7
CiPaw.02G069000 Carya illinoinensis HOM05D002770 ORTHO05D003011 1.5e-27 126.7 144 50.0
DCAR_023412 Daucus carota HOM05D002770 ORTHO05D003011 1.5e-27 126.7 142 51.4
FvH4_4g21580 Fragaria vesca HOM05D002770 ORTHO05D003011 1.9e-27 126.3 144 50.0
RcHm_v2.0_Chr4g0427691 Rosa chinensis HOM05D002770 ORTHO05D003011 2.5e-27 125.9 144 48.6
Duzib212G0204 Durio zibethinus HOM05D002770 ORTHO05D003011 5.6e-27 124.8 144 47.9
FAN12G0637 Fragaria x ananassa HOM05D002770 ORTHO05D003011 7.3e-27 124.4 144 49.3
Medtr2g035830 Medicago truncatula HOM05D002770 ORTHO05D003011 7.3e-27 124.4 144 47.2
COL.COLO4_34510 Corchorus olitorius HOM05D002770 ORTHO05D003011 1.2e-26 123.6 144 46.5
Gohir.D06G187700 Gossypium hirsutum HOM05D002770 ORTHO05D003011 1.6e-26 123.2 144 47.9
Gorai.010G220000 Gossypium raimondii HOM05D002770 ORTHO05D003011 1.6e-26 123.2 144 47.9
Lj6g0024524 Lotus japonicus HOM05D002770 ORTHO05D003011 2.1e-26 122.9 144 47.2
Aqoxy2G02502 Aquilegia oxysepala HOM05D002770 ORTHO05D003011 2.8e-26 122.5 144 48.6
CiPaw.01G128600 Carya illinoinensis HOM05D002770 ORTHO05D003011 8.1e-26 120.9 144 49.3
Hma1.2p1_2234F.1_g317660 Hydrangea macrophylla HOM05D002770 ORTHO05D003011 8.1e-26 120.9 144 47.9
Ca_25152_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 1.4e-25 120.2 145 46.2
Lalb_Chr18g0052121 Lupinus albus HOM05D002770 ORTHO05D003011 2.4e-25 119.4 144 47.9
Migut.G00902 Erythranthe guttata HOM05D002770 ORTHO05D003011 3.1e-25 119.0 148 50.0
CANSAT64G0103 Cannabis sativa HOM05D002770 ORTHO05D003011 4.0e-25 118.6 144 44.4
Cpa.g.sc146.17 Carica papaya HOM05D002770 ORTHO05D003011 4.0e-25 118.6 144 45.1
QL06p014372 Quercus lobata HOM05D002770 ORTHO05D003011 5.2e-25 118.2 143 46.9
AUR62002542 Chenopodium quinoa HOM05D002770 ORTHO05D003011 6.9e-25 117.9 141 47.5
Cc08_g04620 Coffea canephora HOM05D002770 ORTHO05D003011 6.9e-25 117.9 143 46.9
Oeu022710.2 Olea europaea HOM05D002770 ORTHO05D003011 6.9e-25 117.9 144 47.9
VMungo1309G0165 Vigna mungo HOM05D002770 ORTHO05D003011 6.9e-25 117.9 143 46.9
Oeu002201.1 Olea europaea HOM05D002770 ORTHO05D003011 9.0e-25 117.5 144 47.2
Glyma.15G157800 Glycine max HOM05D002770 ORTHO05D003011 1.2e-24 117.1 143 46.9
Psat1g149840 Pisum sativum HOM05D002770 ORTHO05D003011 1.2e-24 117.1 144 45.1
HanXRQChr01g0006321 Helianthus annuus HOM05D002770 ORTHO05D003011 2.0e-24 116.3 146 49.3
AUR62029961 Chenopodium quinoa HOM05D002770 ORTHO05D003011 2.6e-24 115.9 141 46.1
Migut.C00319 Erythranthe guttata HOM05D002770 ORTHO05D003011 2.6e-24 115.9 151 49.0
SalBow8G2001 Salvia bowleyana HOM05D002770 ORTHO05D003011 2.6e-24 115.9 144 48.6
Hund12259 Selenicereus undatus HOM05D002770 ORTHO05D003011 2.6e-24 115.9 142 48.6
Lsat_1_v5_gn_1_40001 Lactuca sativa HOM05D002770 ORTHO05D003011 3.4e-24 115.5 144 47.9
Thhalv10020620m.g Eutrema salsugineum HOM05D002770 ORTHO05D003011 5.8e-24 114.8 142 46.5
ECA233G4875 Erigeron canadensis HOM05D002770 ORTHO05D003011 7.6e-24 114.4 144 47.9
Phvul.009G242200 Phaseolus vulgaris HOM05D002770 ORTHO05D003011 7.6e-24 114.4 143 46.9
Sp3g05910 Schrenkiella parvula HOM05D002770 ORTHO05D003011 7.6e-24 114.4 144 45.8
Ciclev10004947m.g Citrus clementina HOM05D002770 ORTHO05D003011 9.9e-24 114.0 144 46.5
Eucgr.B03964 Eucalyptus grandis HOM05D002770 ORTHO05D003011 9.9e-24 114.0 144 47.2
Carub.0003s0648 Capsella rubella HOM05D002770 ORTHO05D003011 2.2e-23 112.8 144 45.8
Sopen01g021230 Solanum pennellii HOM05D002770 ORTHO05D003011 2.9e-23 112.5 144 46.5
TPR.G31846 Trifolium pratense HOM05D002770 ORTHO05D003011 2.9e-23 112.5 146 45.2
Sc13g0008040 Simmondsia chinensis HOM05D002770 ORTHO05D003011 4.9e-23 111.7 142 47.2
PGSC0003DMG402019999 Solanum tuberosum HOM05D002770 ORTHO05D003011 4.9e-23 111.7 144 45.8
EL10Ac3g06238 Beta vulgaris HOM05D002770 ORTHO05D003011 8.4e-23 110.9 141 45.4
AL3G18130 Arabidopsis lyrata HOM05D002770 ORTHO05D003011 1.1e-22 110.5 144 45.8
BcaC09g47928 Brassica carinata HOM05D002770 ORTHO05D003011 1.1e-22 110.5 144 43.8
BNapus_Darmor_BZH_scaffold_117p00170 Brassica napus HOM05D002770 ORTHO05D003011 1.1e-22 110.5 144 43.8
BolC1t05577H Brassica oleracea HOM05D002770 ORTHO05D003011 1.1e-22 110.5 144 43.8
BraA01t04406Z Brassica rapa HOM05D002770 ORTHO05D003011 1.1e-22 110.5 144 43.8
Nn3g21931 Nelumbo nucifera HOM05D002770 ORTHO05D003011 1.1e-22 110.5 144 43.1
MSTRG.3837 Avicennia marina HOM05D002770 ORTHO05D003011 1.4e-22 110.2 144 44.4
SGA_v2.0_scaffold157G37392 Striga asiatica HOM05D002770 ORTHO05D003011 1.4e-22 110.2 144 44.4
BcaB04g21302 Brassica carinata HOM05D002770 ORTHO05D003011 2.4e-22 109.4 144 43.8
Ah.07g203570 Amaranthus hybridus HOM05D002770 ORTHO05D003011 3.2e-22 109.0 141 42.6
CARHR081560 Cardamine hirsuta HOM05D002770 ORTHO05D003011 4.2e-22 108.6 144 43.1
Aa31LG5G17520 Aethionema arabicum HOM05D002770 ORTHO05D003011 7.1e-22 107.8 142 43.0
Peaxi162Scf00126g01021 Petunia axillaris HOM05D002770 ORTHO05D003011 1.2e-21 107.1 145 44.1
MBI18_g10383_MAGBIO Magnolia biondii HOM05D002770 ORTHO05D003011 1.6e-21 106.7 144 43.8
AT3G06960 Arabidopsis thaliana HOM05D002770 ORTHO05D003011 2.1e-21 106.3 144 45.1
Dinv29500 Davidia involucrata HOM05D002770 ORTHO05D003011 3.5e-21 105.5 125 49.6
AL159U10030 Arabidopsis lyrata HOM05D000915 ORTHO05D003011 6.0e-21 104.8 146 45.2
Sed0027195 Sechium edule HOM05D002770 ORTHO05D003011 1.3e-20 103.6 144 41.7
Ca_01993_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 1.7e-20 103.2 136 43.4
PSO761G0657 Papaver somniferum HOM05D002770 ORTHO05D003011 1.7e-20 103.2 145 44.8
THA.LOC104818928 Tarenaya hassleriana HOM05D002770 ORTHO05D003011 1.7e-20 103.2 145 41.4
CDE09G1356 Ceratophyllum demersum HOM05D002770 ORTHO05D003011 2.3e-20 102.8 143 41.3
arahy.Tifrunner.gnm1.ann1.09HRLI Arachis hypogaea HOM05D002770 ORTHO05D003011 3.0e-20 102.4 145 44.1
MELO3C021227.2 Cucumis melo HOM05D002770 ORTHO05D003011 5.1e-20 101.7 145 42.8
PSO210G1766 Papaver somniferum HOM05D002770 ORTHO05D003011 5.1e-20 101.7 145 43.4
ClCG06G004160 Citrullus lanatus HOM05D002770 ORTHO05D003011 1.1e-19 100.5 145 42.8
Zm00001eb127450 Zea mays HOM05D002770 ORTHO05D003011 2.5e-19 99.4 144 41.0
arahy.Tifrunner.gnm1.ann1.PPN3ZF Arachis hypogaea HOM05D002770 ORTHO05D003011 5.6e-19 98.2 160 39.4
CsaV3_6G000270 Cucumis sativus L. HOM05D002770 ORTHO05D003011 1.3e-18 97.1 145 40.7
Os01g0251000 Oryza sativa ssp. japonica HOM05D002770 ORTHO05D003011 3.6e-18 95.5 145 40.0
Glyma.09G051500 Glycine max HOM05D002770 ORTHO05D003011 2.4e-17 92.8 149 40.9
CDE02G1128 Ceratophyllum demersum HOM05D001914 ORTHO05D003011 5.8e-16 88.2 132 37.9
ATR0796G162 Amborella trichopoda HOM05D002770 ORTHO05D003011 2.2e-15 86.3 142 38.0
unitig_0.g29 Utricularia gibba HOM05D002770 ORTHO05D003750 1.6e-13 80.1 134 38.1
CDE09G0451 Ceratophyllum demersum HOM05D002770 ORTHO05D003011 1.6e-10 70.1 122 34.4
Migut.N01715 Erythranthe guttata HOM05D002770 ORTHO05D003011 6.9e-09 64.7 58 48.3
FAN17G1618 Fragaria x ananassa HOM05D002770 ORTHO05D003011 2.6e-08 62.8 112 34.8
PGR004G2859 Punica granatum HOM05D002770 ORTHO05D003011 5.8e-08 61.6 71 40.8
Haze_02902 Corylus avellana HOM05D002770 ORTHO05D003011 7.6e-08 61.2 58 50.0
Duzib138G1245 Durio zibethinus HOM05D002770 ORTHO05D003011 7.6e-08 61.2 58 48.3
Cfa011023 Carpinus fangiana HOM05D002770 ORTHO05D003011 1.3e-07 60.5 58 50.0
ECA236G0339 Erigeron canadensis HOM05D002770 ORTHO05D003011 1.3e-07 60.5 79 35.4
Gohir.A12G099200 Gossypium hirsutum HOM05D002770 ORTHO05D003011 1.3e-07 60.5 58 48.3
Gohir.D12G102200 Gossypium hirsutum HOM05D002770 ORTHO05D003011 1.3e-07 60.5 58 48.3
Gorai.008G111400 Gossypium raimondii HOM05D002770 ORTHO05D003011 1.3e-07 60.5 58 48.3
QL04p026158 Quercus lobata HOM05D002770 ORTHO05D003011 1.3e-07 60.5 58 50.0
SalBow4G3318 Salvia bowleyana HOM05D002770 ORTHO05D003011 1.3e-07 60.5 58 44.8
CSS0009152 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 1.7e-07 60.1 59 49.2
CSS0011590 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 1.7e-07 60.1 59 49.2
TAR374G1576 Trochodendron aralioides HOM05D002770 ORTHO05D003011 1.7e-07 60.1 58 44.8
MD07G1090600 Malus domestica HOM05D002770 ORTHO05D003011 2.9e-07 59.3 58 48.3
Oeu002904.1 Olea europaea HOM05D002770 ORTHO05D003011 2.9e-07 59.3 58 48.3
Cc02_g25620 Coffea canephora HOM05D002770 ORTHO05D003011 3.8e-07 58.9 58 48.3
HanXRQChr06g0168271 Helianthus annuus HOM05D002770 ORTHO05D003011 3.8e-07 58.9 58 46.6
Manes.05G058500 Manihot esculenta HOM05D002770 ORTHO05D003011 3.8e-07 58.9 58 48.3
CSS0043922 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 4.9e-07 58.5 58 44.8
COL.COLO4_12352 Corchorus olitorius HOM05D002770 ORTHO05D003011 4.9e-07 58.5 58 48.3
MD02G1224900 Malus domestica HOM05D002770 ORTHO05D003011 4.9e-07 58.5 58 48.3
CAN.G756.17 Capsicum annuum HOM05D002770 ORTHO05D003011 6.4e-07 58.2 58 50.0
Eucgr.D01183 Eucalyptus grandis HOM05D002770 ORTHO05D003011 6.4e-07 58.2 58 48.3
Nitab4.5_0005064g0050 Nicotiana tabacum HOM05D002770 ORTHO05D003011 6.4e-07 58.2 58 51.7
Prupe.2G115700 Prunus persica HOM05D002770 ORTHO05D003011 6.4e-07 58.2 58 48.3
Sed0027284 Sechium edule HOM05D002770 ORTHO05D003011 6.4e-07 58.2 58 44.8
CDE04G2107 Ceratophyllum demersum HOM05D002770 ORTHO05D003011 8.4e-07 57.8 58 48.3
Nn1g00665 Nelumbo nucifera HOM05D002770 ORTHO05D003011 8.4e-07 57.8 58 48.3
PSO782G1010 Papaver somniferum HOM05D002770 ORTHO05D003011 8.4e-07 57.8 146 30.8
PGSC0003DMG401001686 Solanum tuberosum HOM05D002770 ORTHO05D003011 8.4e-07 57.8 58 53.4
PGSC0003DMG402001686 Solanum tuberosum HOM05D002770 ORTHO05D003011 8.4e-07 57.8 58 53.4
Thecc.01G402500 Theobroma cacao HOM05D002770 ORTHO05D003011 8.4e-07 57.8 57 47.4
MSTRG.4960 Avicennia marina HOM05D002770 ORTHO05D003011 1.1e-06 57.4 58 44.8
Dinv44022 Davidia involucrata HOM05D002770 ORTHO05D003011 1.1e-06 57.4 58 50.0
FvH4_7g08780 Fragaria vesca HOM05D002770 ORTHO05D003011 1.1e-06 57.4 58 48.3
FAN06G1321 Fragaria x ananassa HOM05D002770 ORTHO05D003011 1.1e-06 57.4 58 48.3
Nitab4.5_0004088g0050 Nicotiana tabacum HOM05D002770 ORTHO05D003011 1.1e-06 57.4 58 50.0
Solyc01g088600.4 Solanum lycopersicum HOM05D002770 ORTHO05D003011 1.1e-06 57.4 58 53.4
Sopen01g035450 Solanum pennellii HOM05D002770 ORTHO05D003011 1.1e-06 57.4 58 53.4
SGA_v2.0_scaffold77G25255 Striga asiatica HOM05D002770 ORTHO05D003011 1.1e-06 57.4 58 46.6
Actinidia05788 Actinidia chinensis HOM05D002770 ORTHO05D003011 1.4e-06 57.0 58 44.8
CiPaw.14G016800 Carya illinoinensis HOM05D002770 ORTHO05D003011 1.4e-06 57.0 57 49.1
Ciclev10019957m.g Citrus clementina HOM05D002770 ORTHO05D003011 1.4e-06 57.0 58 46.6
RcHm_v2.0_Chr1g0344071 Rosa chinensis HOM05D002770 ORTHO05D003011 1.4e-06 57.0 58 48.3
FAN01G2864 Fragaria x ananassa HOM05D002770 ORTHO05D003011 1.9e-06 56.6 58 48.3
Psat0s4427g0040 Pisum sativum HOM05D002770 ORTHO05D003011 1.9e-06 56.6 58 48.3
GSVIVG01018374001 Vitis vinifera HOM05D002770 ORTHO05D003011 1.9e-06 56.6 58 46.6
Sc02g0003270 Simmondsia chinensis HOM05D002770 ORTHO05D003011 2.4e-06 56.2 58 46.6
Atru.chr5.43 Acer truncatum HOM05D002770 ORTHO05D003011 3.2e-06 55.8 58 44.8
Atru.chr5.74 Acer truncatum HOM05D002770 ORTHO05D003011 3.2e-06 55.8 58 44.8
MELO3C006267.2 Cucumis melo HOM05D002770 ORTHO05D003011 3.2e-06 55.8 58 43.1
FAN03G2444 Fragaria x ananassa HOM05D002770 ORTHO05D003011 3.2e-06 55.8 58 46.6
TPR.G17359 Trifolium pratense HOM05D002770 ORTHO05D003011 3.2e-06 55.8 58 43.1
TWI14G0561 Tripterygium wilfordii HOM05D002770 ORTHO05D003011 3.2e-06 55.8 58 44.8
ClCG05G002890 Citrullus lanatus HOM05D002770 ORTHO05D003011 4.2e-06 55.5 58 43.1
DCAR_025025 Daucus carota HOM05D002770 ORTHO05D003011 4.2e-06 55.5 62 45.2
BraA05t19454Z Brassica rapa HOM05D002770 ORTHO05D003011 5.5e-06 55.1 76 38.2
Peaxi162Scf00745g00016 Petunia axillaris HOM05D002770 ORTHO05D003011 5.5e-06 55.1 58 48.3
BcaC02g12288 Brassica carinata HOM05D002770 ORTHO05D003011 7.1e-06 54.7 76 38.2
A03p24840 Brassica napus HOM05D002770 ORTHO05D003011 7.1e-06 54.7 76 38.2
A05p04780 Brassica napus HOM05D002770 ORTHO05D003011 7.1e-06 54.7 76 38.2
C04p05590 Brassica napus HOM05D002770 ORTHO05D003011 7.1e-06 54.7 76 38.2
BolC3t15311H Brassica oleracea HOM05D002770 ORTHO05D003011 7.1e-06 54.7 76 38.2
BolC4t22189H Brassica oleracea HOM05D002770 ORTHO05D003011 7.1e-06 54.7 76 38.2
BraA03t11691Z Brassica rapa HOM05D002770 ORTHO05D003011 7.1e-06 54.7 76 38.2
MD07G1088800 Malus domestica HOM05D002770 ORTHO05D003011 7.1e-06 54.7 55 47.3
Potri.014G044200 Populus trichocarpa HOM05D002770 ORTHO05D003011 7.1e-06 54.7 57 45.6
Sabra14G0032100 Salix brachista HOM05D002770 ORTHO05D003011 7.1e-06 54.7 57 45.6
BcaB02g08839 Brassica carinata HOM05D002770 ORTHO05D003011 9.3e-06 54.3 76 36.8
Cpa.g.sc52.70 Carica papaya HOM05D002770 ORTHO05D003011 9.3e-06 54.3 58 43.1
Ca_23142_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 9.3e-06 54.3 58 43.1
MBI04_g03343_MAGBIO Magnolia biondii HOM05D002770 ORTHO05D003011 9.3e-06 54.3 81 38.3
SEGI_01888 Sequoiadendron giganteum HOM05D002770 ORTHO05D003011 9.3e-06 54.3 59 37.3


User provided reference genes

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