Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021916 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 1.7e-26 121.7 54 100.0
CSS0008158 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 1.1e-17 92.4 66 69.7
CSS0009145 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 1.1e-17 92.4 66 69.7
CSS0012661 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 1.5e-17 92.0 65 69.2
CSS0029893 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 2.5e-17 91.3 65 69.2
CSS0002479 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 2.8e-16 87.8 65 67.7
CSS0032362 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D111740 1.0e-15 85.9 55 74.5
CSS0026552 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D111796 7.5e-14 79.7 81 53.1
Migut.A00166 Erythranthe guttata HOM05D000251 ORTHO05D005532 1.5e-09 65.5 48 70.8
Oeu053660.3 Olea europaea HOM05D000251 ORTHO05D005532 1.5e-09 65.5 48 70.8
EL10Ac2g03351 Beta vulgaris HOM05D000251 ORTHO05D005532 2.5e-09 64.7 35 82.9
ClCG07G002540 Citrullus lanatus HOM05D000251 ORTHO05D005532 2.5e-09 64.7 48 68.8
Atru.chr6.2885 Acer truncatum HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Atru.chr6.2947 Acer truncatum HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Actinidia30461 Actinidia chinensis HOM05D000251 ORTHO05D005532 3.3e-09 64.3 48 68.8
MSTRG.25929 Avicennia marina HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Cpa.g.sc83.76 Carica papaya HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Ciclev10014095m.g Citrus clementina HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
COL.COLO4_05022 Corchorus olitorius HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Dinv04805 Davidia involucrata HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Duzib132G0720 Durio zibethinus HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Gohir.A12G139000 Gossypium hirsutum HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Gohir.D12G143400 Gossypium hirsutum HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Gorai.008G154700 Gossypium raimondii HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Lj8C560G4 Lonicera japonica HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Peaxi162Scf00495g00121 Petunia axillaris HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Thecc.02G183800 Theobroma cacao HOM05D000251 ORTHO05D005532 3.3e-09 64.3 35 85.7
Ah.16g106630 Amaranthus hybridus HOM05D000251 ORTHO05D005532 4.3e-09 63.9 35 85.7
Ca_09441_v3 Cicer arietinum L. HOM05D000251 ORTHO05D005532 4.3e-09 63.9 35 82.9
MD09G1243400 Malus domestica HOM05D000251 ORTHO05D005532 4.3e-09 63.9 48 68.8
MD17G1235400 Malus domestica HOM05D000251 ORTHO05D005532 4.3e-09 63.9 48 68.8
Medtr2g090610 Medicago truncatula HOM05D000251 ORTHO05D005532 4.3e-09 63.9 35 82.9
Psat6g048960 Pisum sativum HOM05D000251 ORTHO05D005532 4.3e-09 63.9 35 82.9
Actinidia11011 Actinidia chinensis HOM05D000251 ORTHO05D005532 5.6e-09 63.5 35 85.7
Potri.017G013500 Populus trichocarpa HOM05D000251 ORTHO05D005532 5.6e-09 63.5 49 69.4
Aqoxy4G02325 Aquilegia oxysepala HOM05D000251 ORTHO05D005532 7.3e-09 63.2 35 82.9
Dinv06874 Davidia involucrata HOM05D000251 ORTHO05D005532 7.3e-09 63.2 35 82.9
QL08p039799 Quercus lobata HOM05D000251 ORTHO05D005532 7.3e-09 63.2 48 68.8
Sabra17G0010900 Salix brachista HOM05D000251 ORTHO05D005532 7.3e-09 63.2 49 69.4
CAN.G61.27 Capsicum annuum HOM05D000251 ORTHO05D005532 9.5e-09 62.8 35 82.9
DCAR_000770 Daucus carota HOM05D000251 ORTHO05D005532 9.5e-09 62.8 35 82.9
Nitab4.5_0000159g0190 Nicotiana tabacum HOM05D000251 ORTHO05D005532 9.5e-09 62.8 35 82.9
Nitab4.5_0006666g0010 Nicotiana tabacum HOM05D000251 ORTHO05D005532 9.5e-09 62.8 35 82.9
PSO541G3054 Papaver somniferum HOM05D000251 ORTHO05D005532 9.5e-09 62.8 35 82.9
PSO675G3162 Papaver somniferum HOM05D000251 ORTHO05D005532 9.5e-09 62.8 35 82.9
Solyc11g017170.1 Solanum lycopersicum HOM05D000251 ORTHO05D005532 9.5e-09 62.8 35 82.9
Sopen11g009100 Solanum pennellii HOM05D000251 ORTHO05D005532 9.5e-09 62.8 35 82.9
PGSC0003DMG400009218 Solanum tuberosum HOM05D000251 ORTHO05D005532 9.5e-09 62.8 35 82.9
AUR62032107 Chenopodium quinoa HOM05D000251 ORTHO05D005532 1.2e-08 62.4 35 82.9
Lalb_Chr14g0367081 Lupinus albus HOM05D000251 ORTHO05D005532 1.2e-08 62.4 35 82.9
Manes.13G143600 Manihot esculenta HOM05D000251 ORTHO05D005532 1.2e-08 62.4 35 82.9
SalBow7G3451 Salvia bowleyana HOM05D000251 ORTHO05D005532 1.2e-08 62.4 35 82.9
TAR627G0503 Trochodendron aralioides HOM05D000251 ORTHO05D005532 1.2e-08 62.4 48 62.5
GSVIVG01020583001 Vitis vinifera HOM05D000251 ORTHO05D005532 1.2e-08 62.4 35 80.0
CSS0015858 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 82.9
CANSAT64G2637 Cannabis sativa HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 82.9
CiPaw.04G127700 Carya illinoinensis HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 82.9
ECA240G1856 Erigeron canadensis HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 82.9
FvH4_5g29681 Fragaria vesca HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 80.0
FAN04G0170 Fragaria x ananassa HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 80.0
FAN08G1506 Fragaria x ananassa HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 80.0
Lsat_1_v5_gn_5_44941 Lactuca sativa HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 82.9
Lj3g0007891 Lotus japonicus HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 80.0
Nn7g36698 Nelumbo nucifera HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 80.0
Phvul.005G101400 Phaseolus vulgaris HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 82.9
Rhsim04G0070600 Rhododendron simsii HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 80.0
RcHm_v2.0_Chr7g0223111 Rosa chinensis HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 80.0
TPR.G6498 Trifolium pratense HOM05D000251 ORTHO05D005532 1.6e-08 62.0 35 80.0
AUR62042419 Chenopodium quinoa HOM05D000251 ORTHO05D005532 2.1e-08 61.6 35 82.9
Glyma.12G205800 Glycine max HOM05D000251 ORTHO05D005532 2.1e-08 61.6 35 80.0
Glyma.13G295100 Glycine max HOM05D000251 ORTHO05D005532 2.1e-08 61.6 35 80.0
HanXRQChr03g0078711 Helianthus annuus HOM05D000251 ORTHO05D005532 2.1e-08 61.6 35 82.9
MBI15_g37780_MAGBIO Magnolia biondii HOM05D000251 ORTHO05D005532 2.1e-08 61.6 35 82.9
Prupe.3G133300 Prunus persica HOM05D000251 ORTHO05D005532 2.1e-08 61.6 48 66.7
Sed0009923 Sechium edule HOM05D000251 ORTHO05D005532 2.1e-08 61.6 48 66.7
VMungo1080G0767 Vigna mungo HOM05D000251 ORTHO05D005532 2.1e-08 61.6 35 80.0
Cfa004459 Carpinus fangiana HOM05D000251 ORTHO05D005532 3.6e-08 60.8 49 65.3
Haze_13211 Corylus avellana HOM05D000251 ORTHO05D005532 3.6e-08 60.8 49 65.3
Haze_13212 Corylus avellana HOM05D000251 ORTHO05D005532 3.6e-08 60.8 49 65.3
Aa31LG5G3020 Aethionema arabicum HOM05D000251 ORTHO05D005532 4.7e-08 60.5 49 65.3
AT5G44240 Arabidopsis thaliana HOM05D000251 ORTHO05D005532 4.7e-08 60.5 49 65.3
MELO3C018710.2 Cucumis melo HOM05D000251 ORTHO05D005532 4.7e-08 60.5 35 80.0
CsaV3_7G005820 Cucumis sativus L. HOM05D000251 ORTHO05D005532 4.7e-08 60.5 35 80.0
DCAR_004456 Daucus carota HOM05D000251 ORTHO05D005532 4.7e-08 60.5 35 80.0
Lalb_Chr24g0399971 Lupinus albus HOM05D000251 ORTHO05D005532 4.7e-08 60.5 35 80.0
Sed0000387 Sechium edule HOM05D000251 ORTHO05D005532 4.7e-08 60.5 35 80.0
Sc12g0003170 Simmondsia chinensis HOM05D000251 ORTHO05D005532 4.7e-08 60.5 35 80.0
vmacro09254 Vaccinium macrocarpon HOM05D000251 ORTHO05D005532 6.1e-08 60.1 35 77.1
arahy.Tifrunner.gnm1.ann1.28NLID Arachis hypogaea HOM05D000251 ORTHO05D005532 8.0e-08 59.7 35 77.1
BcaC06g34580 Brassica carinata HOM05D000251 ORTHO05D005532 8.0e-08 59.7 35 80.0
A06p47370 Brassica napus HOM05D000251 ORTHO05D005532 8.0e-08 59.7 35 80.0
BolC7t43218H Brassica oleracea HOM05D000251 ORTHO05D005532 8.0e-08 59.7 35 80.0
BraA06t27607Z Brassica rapa HOM05D000251 ORTHO05D005532 8.0e-08 59.7 35 80.0
CARHR178990 Cardamine hirsuta HOM05D000251 ORTHO05D005532 8.0e-08 59.7 35 80.0
Sp2g09050 Schrenkiella parvula HOM05D000251 ORTHO05D005532 8.0e-08 59.7 35 80.0
AL8G15780 Arabidopsis lyrata HOM05D000251 ORTHO05D005532 1.0e-07 59.3 49 65.3
Carub.0008s0428 Capsella rubella HOM05D000251 ORTHO05D005532 1.0e-07 59.3 49 65.3
CDE11G0168 Ceratophyllum demersum HOM05D000251 ORTHO05D005532 1.0e-07 59.3 35 71.4
Eucgr.K01048 Eucalyptus grandis HOM05D000251 ORTHO05D005532 1.0e-07 59.3 35 80.0
Thhalv10003135m.g Eutrema salsugineum HOM05D000251 ORTHO05D005532 1.0e-07 59.3 49 63.3
PGR142G3105 Punica granatum HOM05D000251 ORTHO05D005532 1.0e-07 59.3 35 80.0
BcaB07g30538 Brassica carinata HOM05D000251 ORTHO05D005532 1.4e-07 58.9 35 77.1
CiPaw.03G180300 Carya illinoinensis HOM05D000251 ORTHO05D005532 1.4e-07 58.9 35 77.1
BcaC03g16645 Brassica carinata HOM05D000251 ORTHO05D005532 1.8e-07 58.5 35 77.1
C02p44780 Brassica napus HOM05D000251 ORTHO05D005532 1.8e-07 58.5 35 77.1
C07p26900 Brassica napus HOM05D000251 ORTHO05D005532 1.8e-07 58.5 35 77.1
BolC2t10522H Brassica oleracea HOM05D000251 ORTHO05D005532 1.8e-07 58.5 35 77.1
ATR0697G110 Amborella trichopoda HOM05D000251 ORTHO05D005532 3.1e-07 57.8 35 71.4
THA.LOC104826038 Tarenaya hassleriana HOM05D000251 ORTHO05D005532 4.0e-07 57.4 35 77.1
unitig_32.g11477 Utricularia gibba HOM05D000251 ORTHO05D005532 5.2e-07 57.0 35 71.4
Mapoly0005s0144 Marchantia polymorpha HOM05D000251 ORTHO05D005532 4.4e-06 53.9 45 60.0
Zm00001eb326010 Zea mays HOM05D000251 ORTHO05D005532 5.8e-06 53.5 49 55.1
HPP92_008210 Vanilla planifolia HOM05D000251 ORTHO05D005532 7.5e-06 53.1 49 57.1
Os11g0446500 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D005532 9.8e-06 52.8 48 58.3
Zm00001eb420520 Zea mays HOM05D000251 ORTHO05D005532 9.8e-06 52.8 35 62.9


User provided reference genes

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