Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 2.4e-103 379.0 218 100.0
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 3.0e-101 372.1 218 95.9
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 2.1e-70 269.6 192 71.4
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 3.3e-68 262.3 187 70.6
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 7.6e-65 251.1 185 68.1
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 3.2e-63 245.7 192 64.6
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 6.0e-62 241.5 183 67.2
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 7.9e-62 241.1 188 62.8
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 3.9e-61 238.8 188 62.2
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 5.1e-61 238.4 181 65.7
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 5.1e-61 238.4 198 63.1
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.1e-60 237.3 188 61.7
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.5e-60 236.9 188 61.7
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 3.3e-60 235.7 183 65.6
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 7.4e-60 234.6 187 64.2
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 7.4e-60 234.6 189 63.0
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 2.8e-59 232.6 190 58.9
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.6e-59 232.3 191 60.7
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 8.1e-59 231.1 191 63.9
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 8.1e-59 231.1 191 59.2
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 1.4e-58 230.3 193 61.7
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 1.4e-58 230.3 177 65.5
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 5.3e-58 228.4 183 63.4
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 2.0e-57 226.5 183 61.7
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 2.6e-57 226.1 182 61.0
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 7.6e-57 224.6 179 62.6
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.3e-56 223.8 191 57.1
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 2.2e-56 223.0 186 62.4
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 2.9e-56 222.6 187 60.4
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 4.9e-56 221.9 186 59.7
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 6.4e-56 221.5 187 58.3
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 6.4e-56 221.5 183 63.4
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 1.4e-55 220.3 187 61.5
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 1.9e-55 219.9 195 57.4
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.9e-55 219.9 189 56.1
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 2.4e-55 219.5 191 56.5
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 9.3e-55 217.6 191 57.1
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 4.6e-54 215.3 192 56.2
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 6.0e-54 214.9 186 61.3
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 6.0e-54 214.9 179 58.7
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 7.9e-54 214.5 184 59.2
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 7.9e-54 214.5 177 60.5
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 3.0e-53 212.6 183 59.6
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.1e-52 210.7 182 56.0
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 9.6e-52 207.6 191 56.5
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 1.3e-51 207.2 177 58.2
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 2.8e-51 206.1 190 56.3
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 6.2e-51 204.9 175 57.1
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.8e-50 203.4 175 56.6
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 2.4e-50 203.0 167 59.9
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 5.3e-50 201.8 190 55.3
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 6.9e-50 201.4 178 52.8
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 6.9e-50 201.4 194 54.6
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 7.6e-49 198.0 193 54.9
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 7.6e-49 198.0 195 56.9
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 1.3e-48 197.2 194 57.2
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 2.2e-48 196.4 180 51.1
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 3.8e-48 195.7 195 55.9
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 3.8e-48 195.7 183 53.6
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 4.9e-48 195.3 182 56.0
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 4.9e-48 195.3 183 54.6
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 6.5e-48 194.9 181 58.0
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 1.1e-47 194.1 183 55.2
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 1.9e-47 193.4 182 55.5
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 4.2e-47 192.2 193 54.4
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 4.2e-47 192.2 180 55.6
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 4.2e-47 192.2 191 52.9
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 9.3e-47 191.0 185 55.7
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 2.7e-46 189.5 178 55.6
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 3.5e-46 189.1 191 51.3
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 3.5e-46 189.1 194 54.1
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 2.3e-45 186.4 187 54.5
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 3.0e-45 186.0 194 52.6
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 3.9e-45 185.7 191 56.0
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 6.7e-45 184.9 194 53.1
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 6.7e-45 184.9 194 53.1
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 1.9e-44 183.3 194 51.0
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 3.3e-44 182.6 168 57.7
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 2.8e-43 179.5 186 52.7
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 2.8e-43 179.5 198 51.0
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 3.7e-43 179.1 186 52.2
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 1.4e-42 177.2 186 52.2
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 1.8e-42 176.8 186 52.7
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 4.1e-42 175.6 186 52.2
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.1e-42 175.6 176 56.8
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 5.3e-42 175.3 186 51.6
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 5.3e-42 175.3 186 51.6
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 5.3e-42 175.3 186 51.6
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 5.3e-42 175.3 186 51.6
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 6.9e-42 174.9 186 51.6
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 6.9e-42 174.9 176 56.8
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.2e-41 174.1 267 40.4
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.2e-41 174.1 179 48.0
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 1.5e-41 173.7 179 53.1
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 4.5e-41 172.2 186 51.1
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 4.5e-41 172.2 186 51.6
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.0e-40 171.0 157 63.1
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.1e-38 163.3 203 46.8
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 3.7e-35 152.5 132 58.3
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 1.4e-34 150.6 182 45.6
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 3.1e-34 149.4 179 43.0
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 3.4e-33 146.0 122 54.1
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 5.5e-31 138.7 118 60.2
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 4.4e-28 129.0 102 59.8
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 8.2e-27 124.8 101 63.4
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 1.4e-26 124.0 181 40.3
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 6.9e-26 121.7 180 38.3
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 3.4e-25 119.4 184 39.7
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 8.5e-24 114.8 185 39.5
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 4.2e-23 112.5 84 66.7
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 9.4e-23 111.3 184 38.0
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 3.6e-22 109.4 84 61.9
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 8.8e-21 104.8 127 47.2
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 5.3e-18 95.5 127 44.1
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 3.7e-11 72.8 51 66.7
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 3.7e-11 72.8 95 44.2
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 6.3e-11 72.0 59 62.7
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 1.4e-10 70.9 59 62.7
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 7.0e-10 68.6 49 63.3


User provided reference genes

Program Settings