Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 5.4e-87 324.3 167 100.0
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.6e-86 322.8 167 99.4
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 3.0e-61 238.8 149 83.2
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 9.0e-58 227.3 153 79.7
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 2.6e-57 225.7 150 80.7
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.4e-57 225.3 152 81.6
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 8.4e-56 220.7 150 78.7
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 1.4e-55 219.9 144 79.2
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 1.4e-55 219.9 152 77.6
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 7.1e-55 217.6 156 75.0
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 1.6e-54 216.5 145 80.0
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.1e-54 216.1 145 80.0
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 2.1e-54 216.1 157 72.6
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 4.6e-54 214.9 147 79.6
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 6.0e-54 214.5 145 79.3
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 7.9e-54 214.2 151 77.5
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 1.3e-53 213.4 145 78.6
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 1.8e-53 213.0 152 73.7
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 3.9e-53 211.8 151 76.2
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 3.9e-53 211.8 151 75.5
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.1e-52 210.3 151 76.2
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 1.5e-52 209.9 151 73.5
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.9e-52 209.5 150 72.7
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.5e-52 209.1 147 74.1
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 3.3e-52 208.8 153 70.6
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.6e-51 206.5 143 76.9
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 2.1e-51 206.1 151 72.8
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 2.8e-51 205.7 150 74.0
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 2.8e-51 205.7 144 75.7
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 3.7e-51 205.3 159 69.2
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 3.7e-51 205.3 153 72.5
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 6.2e-51 204.5 145 74.5
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.1e-50 203.8 151 72.8
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 1.1e-50 203.8 152 71.1
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.4e-50 203.4 146 73.3
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.8e-50 203.0 151 71.5
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 1.8e-50 203.0 146 73.3
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 2.4e-50 202.6 153 71.9
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 4.0e-50 201.8 146 71.9
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 6.9e-50 201.1 148 72.3
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 6.9e-50 201.1 147 74.1
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 6.9e-50 201.1 151 71.5
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.2e-49 200.3 163 69.3
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.2e-49 200.3 149 74.5
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.5e-49 199.9 157 66.9
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 2.0e-49 199.5 148 72.3
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.6e-49 199.1 163 68.7
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 2.6e-49 199.1 143 73.4
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 3.4e-49 198.7 157 66.2
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 3.4e-49 198.7 148 70.3
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.4e-49 198.7 151 70.9
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 4.5e-49 198.4 148 70.9
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 4.5e-49 198.4 149 69.1
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 4.5e-49 198.4 148 70.9
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 4.5e-49 198.4 157 66.2
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 5.8e-49 198.0 151 69.5
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 5.8e-49 198.0 153 69.9
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 5.8e-49 198.0 155 67.7
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 5.8e-49 198.0 148 70.3
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 5.8e-49 198.0 155 67.7
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 1.0e-48 197.2 146 71.9
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 1.0e-48 197.2 155 68.4
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-48 196.8 148 70.3
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.7e-48 196.4 148 70.3
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 1.7e-48 196.4 150 68.0
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 1.7e-48 196.4 145 71.0
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 2.2e-48 196.1 151 68.9
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 2.2e-48 196.1 151 68.9
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.2e-48 196.1 147 69.4
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 4.9e-48 194.9 146 70.5
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 8.4e-48 194.1 145 69.7
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 8.4e-48 194.1 145 69.7
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.1e-47 193.7 143 73.4
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 1.1e-47 193.7 179 62.0
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.4e-47 193.4 149 67.1
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.9e-47 193.0 143 69.9
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.9e-47 193.0 143 69.9
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.9e-47 193.0 143 69.9
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 4.2e-47 191.8 132 73.5
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 5.5e-47 191.4 143 67.8
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 7.1e-47 191.0 145 66.9
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 7.1e-47 191.0 145 66.9
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 7.1e-47 191.0 145 66.9
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 7.1e-47 191.0 145 66.9
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 7.1e-47 191.0 145 66.9
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 7.1e-47 191.0 123 78.0
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 9.3e-47 190.7 124 77.4
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 1.2e-46 190.3 153 66.7
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 1.6e-46 189.9 146 68.5
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 4.6e-46 188.3 120 77.5
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 7.9e-46 187.6 150 70.0
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 1.8e-45 186.4 155 64.5
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 3.0e-45 185.7 136 72.8
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 3.9e-45 185.3 151 63.6
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 2.2e-43 179.5 125 71.2
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 2.8e-43 179.1 154 63.6
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 2.8e-43 179.1 155 65.8
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 4.8e-43 178.3 139 72.7
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 8.2e-43 177.6 114 78.1
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.4e-42 176.8 168 60.1
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.4e-42 176.0 128 68.0
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.1e-42 175.3 145 67.6
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 6.9e-42 174.5 119 73.1
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 1.2e-41 173.7 135 65.2
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 1.3e-40 170.2 153 62.1
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 3.8e-40 168.7 136 61.8
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 8.5e-40 167.5 115 68.7
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 8.5e-40 167.5 116 72.4
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.1e-39 167.2 144 63.2
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 6.1e-38 161.4 144 63.9
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 9.7e-36 154.1 144 58.3
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.1e-34 148.7 149 58.4
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 4.2e-31 138.7 108 63.9
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.4e-28 128.6 83 77.1
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 9.7e-28 127.5 83 75.9
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.1e-26 124.0 94 73.4
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.1e-26 124.0 83 74.7
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 5.3e-26 121.7 96 66.7
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 1.1e-23 114.0 98 64.3
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 1.4e-21 107.1 69 79.7
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 2.6e-20 102.8 81 70.4
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 1.7e-19 100.1 143 39.9
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 2.2e-19 99.8 121 41.3
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 4.8e-19 98.6 153 37.9
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.6e-17 93.6 65 67.7
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 7.7e-17 91.3 57 77.2
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 3.8e-16 89.0 116 38.8
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.5e-15 86.3 71 69.0
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.2e-15 85.5 75 65.3
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.6e-12 76.3 108 45.4
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 8.2e-11 71.2 59 66.1
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 7.0e-10 68.2 57 66.7
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 1.6e-09 67.0 95 37.9
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 2.2e-08 63.2 82 45.1


User provided reference genes

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