Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 2.0e-170 602.4 325 100.0
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 2.9e-137 492.3 332 79.8
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 3.5e-130 468.8 299 84.3
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 9.8e-117 424.1 300 76.0
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 1.3e-116 423.7 301 75.4
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 2.2e-116 422.9 294 76.9
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 1.1e-115 420.6 286 78.3
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 1.1e-115 420.6 306 73.9
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 5.4e-115 418.3 301 73.8
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 9.1e-115 417.5 288 76.4
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 1.6e-114 416.8 242 88.4
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 7.7e-114 414.5 324 72.8
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 7.7e-114 414.5 296 75.0
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 1.3e-113 413.7 293 75.8
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 2.2e-113 412.9 324 71.6
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 2.9e-113 412.5 286 76.2
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 3.8e-113 412.1 253 85.0
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 6.5e-113 411.4 259 79.9
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 6.5e-113 411.4 253 85.0
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 6.5e-113 411.4 302 71.2
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 6.5e-113 411.4 325 71.1
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 6.5e-113 411.4 325 71.1
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 8.5e-113 411.0 282 78.4
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 8.5e-113 411.0 296 74.3
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 1.5e-112 410.2 258 82.6
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 3.2e-112 409.1 299 73.2
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 4.2e-112 408.7 300 74.0
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 5.5e-112 408.3 298 74.8
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 9.4e-112 407.5 299 73.2
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 1.6e-111 406.8 257 82.1
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 2.7e-111 406.0 238 86.6
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 4.7e-111 405.2 256 79.7
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 4.7e-111 405.2 288 75.7
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 6.1e-111 404.8 245 82.9
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 3.0e-110 402.5 257 80.2
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 5.2e-110 401.7 278 75.9
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 1.5e-109 400.2 269 76.2
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 2.0e-109 399.8 286 75.5
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 2.0e-109 399.8 257 81.7
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 4.4e-109 398.7 260 78.8
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 5.7e-109 398.3 295 73.2
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 5.7e-109 398.3 279 74.2
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 7.5e-109 397.9 231 87.4
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 2.8e-108 396.0 302 70.2
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 3.7e-108 395.6 285 74.4
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 4.9e-108 395.2 232 84.9
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 6.3e-108 394.8 288 73.3
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 3.1e-107 392.5 260 77.3
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 7.0e-107 391.3 255 78.4
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 7.0e-107 391.3 250 77.6
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 1.2e-106 390.6 267 77.2
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 3.5e-106 389.0 278 75.5
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 3.5e-106 389.0 254 79.5
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 4.5e-106 388.7 252 79.0
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 7.7e-106 387.9 237 82.3
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 3.8e-105 385.6 280 72.1
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 5.0e-105 385.2 212 91.0
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 8.6e-105 384.4 260 78.1
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 1.9e-104 383.3 262 75.2
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 1.9e-104 383.3 283 70.7
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 3.3e-104 382.5 261 76.6
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 4.3e-104 382.1 223 86.5
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 7.3e-104 381.3 244 78.7
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 9.5e-104 380.9 244 78.3
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 9.5e-104 380.9 281 71.9
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 1.2e-103 380.6 244 78.3
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 3.6e-103 379.0 244 79.5
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 4.7e-103 378.6 244 77.9
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 6.1e-103 378.3 244 77.5
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 8.0e-103 377.9 269 75.1
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 2.3e-102 376.3 304 66.8
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 2.3e-102 376.3 300 71.7
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 8.9e-102 374.4 244 78.7
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 8.9e-102 374.4 244 78.7
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 2.6e-101 372.9 244 78.3
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 9.8e-101 370.9 211 88.6
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 2.2e-100 369.8 264 72.7
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 6.4e-100 368.2 304 66.8
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.8e-99 366.7 256 76.2
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 5.4e-99 365.2 244 75.4
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 7.0e-99 364.8 241 75.9
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 9.2e-99 364.4 259 75.3
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 1.6e-98 363.6 364 58.0
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 1.6e-98 363.6 297 69.4
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 1.7e-97 360.1 242 73.6
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 2.3e-97 359.8 394 55.1
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 3.3e-96 355.9 248 74.2
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 5.6e-96 355.1 216 82.9
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 7.3e-96 354.8 272 70.2
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 8.0e-95 351.3 270 71.9
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 6.8e-94 348.2 244 71.7
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 3.4e-93 345.9 273 70.0
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 1.3e-92 344.0 259 71.8
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 3.2e-91 339.3 228 73.7
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 8.6e-89 331.3 223 73.1
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 1.1e-88 330.9 284 65.8
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.9e-88 330.1 236 69.9
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 4.3e-88 328.9 296 65.5
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 2.1e-87 326.6 193 84.5
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 3.6e-87 325.9 208 83.2
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 6.2e-87 325.1 226 70.8
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 6.4e-84 315.1 205 79.5
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 3.2e-83 312.8 248 67.3
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 1.2e-82 310.8 238 69.7
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 6.6e-81 305.1 204 78.9
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 5.4e-75 285.4 270 60.7
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 2.5e-72 276.6 212 72.6
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 7.3e-72 275.0 226 63.7
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 2.4e-70 270.0 172 76.7
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 6.4e-68 261.9 263 55.1
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 1.9e-67 260.4 167 79.6
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 5.3e-54 215.7 176 67.6
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 7.6e-53 211.8 177 57.6
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 1.4e-46 191.0 162 64.2
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 7.1e-43 178.7 168 59.5
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.8e-41 174.1 153 67.3
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 1.5e-40 171.0 169 55.0
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 2.8e-39 166.8 104 77.9
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 1.1e-30 138.3 260 41.9
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 1.2e-29 134.8 280 39.6
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 7.2e-27 125.6 153 49.0
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 8.8e-25 118.6 194 44.3
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 4.1e-22 109.8 144 48.6
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 2.5e-19 100.5 73 65.8
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 4.7e-18 96.3 255 28.2
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 4.7e-18 96.3 99 54.5
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 3.9e-17 93.2 62 69.4
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 4.4e-16 89.7 56 76.8
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 1.3e-15 88.2 220 30.0
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 9.1e-14 82.0 48 83.3
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 1.2e-13 81.6 88 60.2
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 1.8e-09 67.8 63 65.1


User provided reference genes

Program Settings