Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021848 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 1.2e-258 896.0 432 100.0
Dinv05883 Davidia involucrata HOM05D003668 ORTHO05D004242 5.1e-206 721.1 425 80.7
CSS0008273 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 4.2e-200 701.4 425 80.7
Actinidia14944 Actinidia chinensis HOM05D003668 ORTHO05D004242 7.2e-200 700.7 425 79.3
Dinv16191 Davidia involucrata HOM05D003668 ORTHO05D004242 2.0e-194 682.6 406 79.3
TAR622G1157 Trochodendron aralioides HOM05D003668 ORTHO05D004242 4.5e-194 681.4 425 75.8
Haze_11039 Corylus avellana HOM05D003668 ORTHO05D004242 5.3e-187 657.9 410 75.9
GSVIVG01011788001 Vitis vinifera HOM05D003668 ORTHO05D004242 5.3e-187 657.9 413 75.3
COL.COLO4_20446 Corchorus olitorius HOM05D003668 ORTHO05D004242 2.9e-185 652.1 423 71.9
Prupe.1G321800 Prunus persica HOM05D003668 ORTHO05D004242 1.1e-184 650.2 422 72.7
Hma1.2p1_0601F.1_g187240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 1.5e-184 649.8 414 73.9
QL01p002314 Quercus lobata HOM05D003668 ORTHO05D004242 3.6e-183 645.2 422 74.4
Thecc.02G278000 Theobroma cacao HOM05D003668 ORTHO05D004242 3.6e-183 645.2 413 73.4
Duzib268G0050 Durio zibethinus HOM05D003668 ORTHO05D004242 4.7e-183 644.8 423 72.3
Potri.008G127300 Populus trichocarpa HOM05D003668 ORTHO05D004242 4.7e-183 644.8 425 72.5
Lj3A875T61 Lonicera japonica HOM05D003668 ORTHO05D004242 6.1e-183 644.4 425 72.7
Atru.chr11.362 Acer truncatum HOM05D003668 ORTHO05D004242 8.0e-183 644.0 425 72.0
Cpa.g.sc65.109 Carica papaya HOM05D003668 ORTHO05D004242 8.0e-183 644.0 425 72.0
Oeu004307.1 Olea europaea HOM05D003668 ORTHO05D004242 2.3e-182 642.5 422 73.2
Aqoxy3G00162 Aquilegia oxysepala HOM05D003668 ORTHO05D004242 8.8e-182 640.6 421 71.3
CiPaw.05G247100 Carya illinoinensis HOM05D003668 ORTHO05D004242 4.4e-181 638.3 410 73.9
PGR102G1044 Punica granatum HOM05D003668 ORTHO05D004242 5.7e-181 637.9 425 71.5
Eucgr.B02887 Eucalyptus grandis HOM05D003668 ORTHO05D004242 9.7e-181 637.1 425 72.0
CANSAT01G1684 Cannabis sativa HOM05D003668 ORTHO05D004242 2.2e-180 636.0 422 71.8
Medtr1g108590 Medicago truncatula HOM05D003668 ORTHO05D004242 8.3e-180 634.0 422 69.9
Glyma.20G124700 Glycine max HOM05D003668 ORTHO05D004242 1.1e-179 633.6 422 69.9
Gohir.D02G146200 Gossypium hirsutum HOM05D003668 ORTHO05D004242 1.8e-179 632.9 425 71.1
Nn4g24060 Nelumbo nucifera HOM05D003668 ORTHO05D004242 3.1e-179 632.1 424 69.8
Gorai.005G163600 Gossypium raimondii HOM05D003668 ORTHO05D004242 5.3e-179 631.3 425 71.1
MD13G1028500 Malus domestica HOM05D003668 ORTHO05D004242 5.3e-179 631.3 421 71.5
Manes.06G062100 Manihot esculenta HOM05D003668 ORTHO05D004242 5.3e-179 631.3 413 72.4
TWI79G0359 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 1.6e-178 629.8 413 71.4
Sc11g0004080 Simmondsia chinensis HOM05D003668 ORTHO05D004242 2.0e-178 629.4 421 71.3
CiPaw.06G013800 Carya illinoinensis HOM05D003668 ORTHO05D004242 3.5e-178 628.6 410 73.2
Sabra08G0096100 Salix brachista HOM05D003668 ORTHO05D004242 5.9e-178 627.9 425 70.4
DCAR_030206 Daucus carota HOM05D003668 ORTHO05D004242 7.7e-178 627.5 423 70.2
Duzib251G0842 Durio zibethinus HOM05D003668 ORTHO05D004242 1.0e-177 627.1 419 70.9
RcHm_v2.0_Chr4g0440821 Rosa chinensis HOM05D003668 ORTHO05D004242 1.0e-177 627.1 408 72.3
Glyma.10G265900 Glycine max HOM05D003668 ORTHO05D004242 1.3e-177 626.7 422 69.0
Potri.010G115700 Populus trichocarpa HOM05D003668 ORTHO05D004242 3.8e-177 625.2 413 71.4
TPR.G4938 Trifolium pratense HOM05D003668 ORTHO05D004242 8.5e-177 624.0 422 69.2
FAN22G1857 Fragaria x ananassa HOM05D003668 ORTHO05D004242 1.5e-176 623.2 420 69.8
arahy.Tifrunner.gnm1.ann1.P86RCB Arachis hypogaea HOM05D003668 ORTHO05D004242 3.2e-176 622.1 422 69.0
arahy.Tifrunner.gnm1.ann1.V9FAYY Arachis hypogaea HOM05D003668 ORTHO05D004242 3.2e-176 622.1 422 69.0
TWI31G1185 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 4.2e-176 621.7 426 70.4
Manes.14G135800 Manihot esculenta HOM05D003668 ORTHO05D004242 7.2e-176 620.9 424 70.3
VMungo0720G2186 Vigna mungo HOM05D003668 ORTHO05D004242 1.2e-175 620.2 422 68.2
Ca_11103_v3 Cicer arietinum L. HOM05D003668 ORTHO05D004242 2.1e-175 619.4 422 69.0
Lj5g0008039 Lotus japonicus HOM05D003668 ORTHO05D004242 2.1e-175 619.4 422 68.7
Lalb_Chr02g0145561 Lupinus albus HOM05D003668 ORTHO05D004242 2.7e-175 619.0 423 70.4
Nitab4.5_0004092g0020 Nicotiana tabacum HOM05D003668 ORTHO05D004242 3.6e-175 618.6 409 71.6
Gohir.A03G123600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 4.7e-175 618.2 414 71.7
Nitab4.5_0004692g0030 Nicotiana tabacum HOM05D003668 ORTHO05D004242 6.1e-175 617.8 412 71.1
Lj6C749G7 Lonicera japonica HOM05D003668 ORTHO05D004242 1.0e-174 617.1 427 70.3
Gorai.009G331400 Gossypium raimondii HOM05D003668 ORTHO05D004242 2.3e-174 615.9 425 69.4
Nn3g18032 Nelumbo nucifera HOM05D003668 ORTHO05D004242 4.0e-174 615.1 412 69.2
Sabra10G0085600 Salix brachista HOM05D003668 ORTHO05D004242 4.0e-174 615.1 435 67.6
FAN07G1823 Fragaria x ananassa HOM05D003668 ORTHO05D004242 1.2e-173 613.6 408 70.3
Lalb_Chr06g0165651 Lupinus albus HOM05D003668 ORTHO05D004242 1.2e-173 613.6 410 70.0
Oeu044332.1 Olea europaea HOM05D003668 ORTHO05D004242 1.2e-173 613.6 442 67.6
FvH4_4g32120 Fragaria vesca HOM05D003668 ORTHO05D004242 1.5e-173 613.2 408 70.3
Peaxi162Scf00119g01535 Petunia axillaris HOM05D003668 ORTHO05D004242 1.5e-173 613.2 436 68.3
PGSC0003DMG400005962 Solanum tuberosum HOM05D003668 ORTHO05D004242 1.5e-173 613.2 423 70.2
Cc11_g09050 Coffea canephora HOM05D003668 ORTHO05D004242 2.0e-173 612.8 410 71.7
FAN12G3685 Fragaria x ananassa HOM05D003668 ORTHO05D004242 3.4e-173 612.1 408 70.1
Gohir.A05G309600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 9.8e-173 610.5 413 69.5
Phvul.007G035900 Phaseolus vulgaris HOM05D003668 ORTHO05D004242 9.8e-173 610.5 410 69.0
MELO3C012298.2 Cucumis melo HOM05D003668 ORTHO05D004242 2.2e-172 609.4 418 69.6
Peaxi162Scf00205g00617 Petunia axillaris HOM05D003668 ORTHO05D004242 4.8e-172 608.2 431 68.7
CAN.G359.7 Capsicum annuum HOM05D003668 ORTHO05D004242 1.1e-171 607.1 412 68.7
CsaV3_5G034880 Cucumis sativus L. HOM05D003668 ORTHO05D004242 1.8e-171 606.3 409 70.4
Gohir.D05G310500 Gossypium hirsutum HOM05D003668 ORTHO05D004242 5.4e-171 604.7 413 69.2
Nitab4.5_0000414g0090 Nicotiana tabacum HOM05D003668 ORTHO05D004242 5.4e-171 604.7 407 70.3
Psat6g222240 Pisum sativum HOM05D003668 ORTHO05D004242 2.9e-169 599.0 410 68.0
Rhsim09G0101100 Rhododendron simsii HOM05D003668 ORTHO05D004242 2.9e-169 599.0 535 60.9
Solyc04g007610.3 Solanum lycopersicum HOM05D003668 ORTHO05D004242 6.6e-169 597.8 412 70.1
Sopen04g002690 Solanum pennellii HOM05D003668 ORTHO05D004242 1.1e-168 597.0 412 70.1
vmacro10624 Vaccinium macrocarpon HOM05D003668 ORTHO05D004242 1.1e-168 597.0 506 61.9
SGA_v2.0_scaffold50G18529 Striga asiatica HOM05D003668 ORTHO05D004242 2.5e-168 595.9 411 68.4
CAN.G1693.10 Capsicum annuum HOM05D003668 ORTHO05D004242 9.5e-168 594.0 420 67.6
Migut.L00756 Erythranthe guttata HOM05D003668 ORTHO05D004242 2.1e-167 592.8 427 68.4
MSTRG.884 Avicennia marina HOM05D003668 ORTHO05D004242 9.8e-165 583.9 428 65.2
Migut.E00406 Erythranthe guttata HOM05D003668 ORTHO05D004242 2.2e-164 582.8 428 64.7
SalBow8G3356 Salvia bowleyana HOM05D003668 ORTHO05D004242 2.2e-164 582.8 423 64.8
Sed0014721 Sechium edule HOM05D003668 ORTHO05D004242 1.8e-163 579.7 420 66.2
ECA246G0677 Erigeron canadensis HOM05D003668 ORTHO05D004242 4.1e-163 578.6 417 66.4
Migut.L00659 Erythranthe guttata HOM05D003668 ORTHO05D004242 2.0e-162 576.2 415 68.2
PSO017G0236 Papaver somniferum HOM05D003668 ORTHO05D004242 2.3e-161 572.8 413 66.3
HanXRQChr15g0477351 Helianthus annuus HOM05D003668 ORTHO05D004242 5.0e-161 571.6 420 65.2
PSO478G1788 Papaver somniferum HOM05D003668 ORTHO05D004242 5.0e-161 571.6 449 62.6
Sp1g13410 Schrenkiella parvula HOM05D003668 ORTHO05D004242 1.1e-160 570.5 411 65.2
Thhalv10000862m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 3.3e-160 568.9 409 64.1
ClCG05G022250 Citrullus lanatus HOM05D003668 ORTHO05D004242 5.6e-160 568.2 429 65.0
MBI05_g00408_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 7.3e-160 567.8 432 65.3
Sabra10G0087300 Salix brachista HOM05D003668 ORTHO05D004242 2.1e-159 566.2 482 58.7
ATR0326G075 Amborella trichopoda HOM05D003668 ORTHO05D004242 8.9e-158 560.8 407 65.6
AL1G27090 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 2.0e-157 559.7 420 63.6
AL5G10220 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 3.4e-157 558.9 409 64.1
CSS0003505 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 3.4e-157 558.9 347 79.8
Lsat_1_v5_gn_3_54180 Lactuca sativa HOM05D003668 ORTHO05D004242 4.4e-157 558.5 409 64.8
AUR62014140 Chenopodium quinoa HOM05D003668 ORTHO05D004242 9.8e-157 557.4 451 59.9
TAR629G1414 Trochodendron aralioides HOM05D003668 ORTHO05D004242 1.7e-156 556.6 413 65.6
BolC2t11016H Brassica oleracea HOM05D003668 ORTHO05D004242 2.2e-156 556.2 409 63.3
BcaC05g25439 Brassica carinata HOM05D003668 ORTHO05D004242 2.9e-156 555.8 417 63.5
BcaC03g17018 Brassica carinata HOM05D003668 ORTHO05D004242 3.7e-156 555.4 409 63.3
C02p49290 Brassica napus HOM05D003668 ORTHO05D004242 3.7e-156 555.4 409 63.3
AT2G01270 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 4.9e-156 555.1 409 63.6
C05p13170 Brassica napus HOM05D003668 ORTHO05D004242 4.9e-156 555.1 417 63.3
BcaB02g06567 Brassica carinata HOM05D003668 ORTHO05D004242 6.4e-156 554.7 418 63.6
Carub.0005s0025 Capsella rubella HOM05D003668 ORTHO05D004242 1.1e-155 553.9 409 63.3
AUR62041242 Chenopodium quinoa HOM05D003668 ORTHO05D004242 1.9e-155 553.1 465 58.1
A02p31850 Brassica napus HOM05D003668 ORTHO05D004242 4.1e-155 552.0 409 62.8
EL10Ac6g14242 Beta vulgaris HOM05D003668 ORTHO05D004242 7.0e-155 551.2 413 65.1
BraA02t08194Z Brassica rapa HOM05D003668 ORTHO05D004242 7.0e-155 551.2 409 62.6
CARHR015560 Cardamine hirsuta HOM05D003668 ORTHO05D004242 1.2e-154 550.4 414 62.6
BcaB07g30412 Brassica carinata HOM05D003668 ORTHO05D004242 1.6e-154 550.1 409 62.6
Aa31LG1G80 Aethionema arabicum HOM05D003668 ORTHO05D004242 2.0e-154 549.7 430 62.3
BraA06t24284Z Brassica rapa HOM05D003668 ORTHO05D004242 2.7e-154 549.3 418 62.4
BolC5t30053H Brassica oleracea HOM05D003668 ORTHO05D004242 4.6e-154 548.5 417 63.1
A06p11040 Brassica napus HOM05D003668 ORTHO05D004242 1.0e-153 547.4 418 62.2
AT1G15020 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 1.7e-153 546.6 411 62.5
Sed0001529 Sechium edule HOM05D003668 ORTHO05D004242 1.1e-152 543.9 409 64.1
A09p61640 Brassica napus HOM05D003668 ORTHO05D004242 1.5e-152 543.5 413 62.7
Aa31LG2G8640 Aethionema arabicum HOM05D003668 ORTHO05D004242 1.9e-152 543.1 409 62.1
BolC8t52070H Brassica oleracea HOM05D003668 ORTHO05D004242 1.2e-151 540.4 413 62.5
Thhalv10007339m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 2.8e-151 539.3 418 61.7
Sp2g12730 Schrenkiella parvula HOM05D003668 ORTHO05D004242 6.2e-151 538.1 409 62.8
C08p45220 Brassica napus HOM05D003668 ORTHO05D004242 5.2e-150 535.0 413 62.0
BcaB02g06571 Brassica carinata HOM05D003668 ORTHO05D004242 8.9e-150 534.3 418 60.8
CDE07G1523 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 1.2e-149 533.9 414 60.1
Ciclev10015050m.g Citrus clementina HOM05D003668 ORTHO05D004242 3.4e-149 532.3 424 61.8
HanXRQChr15g0488541 Helianthus annuus HOM05D003668 ORTHO05D004242 2.4e-147 526.2 420 61.2
DCAR_007279 Daucus carota HOM05D003668 ORTHO05D004242 9.2e-147 524.2 413 60.8
HanXRQChr08g0212821 Helianthus annuus HOM05D003668 ORTHO05D004242 1.6e-146 523.5 418 61.7
CARHR143800 Cardamine hirsuta HOM05D003668 ORTHO05D004242 7.8e-146 521.2 395 63.3
BraA09t41536Z Brassica rapa HOM05D003668 ORTHO05D004242 2.5e-144 516.2 400 61.8
Carub.0001s1479 Capsella rubella HOM05D003668 ORTHO05D004242 3.1e-142 509.2 419 59.7
Lsat_1_v5_gn_8_42960 Lactuca sativa HOM05D003668 ORTHO05D004242 7.5e-141 504.6 427 58.5
CDE06G0369 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 4.9e-140 501.9 413 58.4
Nitab4.5_0001648g0080 Nicotiana tabacum HOM05D003668 ORTHO05D004242 2.7e-130 469.5 318 71.1
Zm00001eb295030 Zea mays HOM05D003668 ORTHO05D004242 3.4e-125 452.6 323 64.1
MBI10_g37695_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 7.6e-117 424.9 416 54.6
ECA233G5938 Erigeron canadensis HOM05D003668 ORTHO05D004242 1.1e-107 394.4 384 53.6
HPP92_020133 Vanilla planifolia HOM05D003668 ORTHO05D004242 1.5e-101 374.0 320 56.2
SMO092G0001 Selaginella moellendorffii HOM05D003668 ORTHO05D004242 4.3e-96 355.9 410 45.1
C07p31700 Brassica napus HOM05D003668 ORTHO05D004242 3.6e-90 336.3 283 56.2
BolC7t43709H Brassica oleracea HOM05D003668 ORTHO05D004242 1.0e-89 334.7 282 56.0
Dinv09244 Davidia involucrata HOM05D003668 ORTHO05D004242 3.3e-88 329.7 205 76.6
SMO351G0322 Selaginella moellendorffii HOM05D003668 ORTHO05D004242 1.4e-86 324.3 409 43.3
Hma1.2p1_0114F.1_g055240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 1.5e-85 320.9 202 74.8
Pp3c20_23660 Physcomitrium patens HOM05D003668 ORTHO05D004242 1.0e-84 318.2 397 42.6
Mapoly0013s0166 Marchantia polymorpha HOM05D003668 ORTHO05D004242 7.9e-82 308.5 417 39.1
Lalb_Chr21g0308541 Lupinus albus HOM05D003668 ORTHO05D004242 2.3e-81 307.0 248 60.9
Pp3c21_14060 Physcomitrium patens HOM05D003668 ORTHO05D004242 4.2e-67 259.6 419 38.4
unitig_27.g25262 Utricularia gibba HOM05D003668 ORTHO05D004242 3.7e-63 246.5 340 39.7
Pp3c19_11370 Physcomitrium patens HOM05D003668 ORTHO05D004242 1.8e-57 227.6 412 34.0
CBR_g58693 Chara braunii HOM05D003668 ORTHO05D004242 1.2e-56 224.9 341 38.1
Pp3c1_7010 Physcomitrium patens HOM05D003668 ORTHO05D004242 1.7e-55 221.1 353 35.1
Eucgr.B02885 Eucalyptus grandis HOM05D003668 ORTHO05D004242 5.6e-43 179.5 123 66.7
Hma1.2p1_0114F.1_g055230 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 8.0e-42 175.6 136 64.7
Glyma.20G135000 Glycine max HOM05D003668 ORTHO05D004242 2.3e-41 174.1 124 66.1
MCO15G061 Micromonas commoda HOM05D003668 ORTHO05D004242 2.3e-41 174.1 351 31.3
vmacro01048 Vaccinium macrocarpon HOM05D001299 ORTHO05D004242 1.7e-39 167.9 188 51.6
SHI16328 Sapria himalayana HOM05D003668 ORTHO05D004242 5.4e-38 162.9 165 50.3
HPP92_020123 Vanilla planifolia HOM05D003668 ORTHO05D004242 1.0e-36 158.7 343 33.2
Lalb_Chr21g0308531 Lupinus albus HOM05D003668 ORTHO05D004242 8.6e-36 155.6 195 46.7
Cre04.g230928 Chlamydomonas reinhardtii HOM05D003668 ORTHO05D004242 3.3e-35 153.7 403 28.8
PRCOL_00000170 Prasinoderma coloniale HOM05D003668 ORTHO05D004242 1.2e-34 151.8 292 34.9
QL01p002329 Quercus lobata HOM05D000125 ORTHO05D000120 1.2e-32 145.2 144 54.9
Hma1.2p1_0114F.1_g055270 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 9.8e-32 142.1 79 77.2
COL.COLO4_20445 Corchorus olitorius HOM05D003668 ORTHO05D004242 6.4e-31 139.4 144 54.9
SEGI_30172 Sequoiadendron giganteum HOM05D003668 ORTHO05D004242 6.4e-31 139.4 124 49.2
RcHm_v2.0_Chr3g0491751 Rosa chinensis HOM05D003668 ORTHO05D004242 2.1e-29 134.4 88 65.9
Hma1.2p1_2887F.1_g329930 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 2.5e-27 127.5 70 77.1
Psat0s3028g0080 Pisum sativum HOM05D003668 ORTHO05D004242 3.7e-23 113.6 74 64.9
SHI16330 Sapria himalayana HOM05D003668 ORTHO05D004242 5.4e-22 109.8 79 68.4
Medtr1g108520 Medicago truncatula HOM05D003668 ORTHO05D004242 1.6e-21 108.2 144 44.4
CSS0012755 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 6.0e-21 106.3 63 73.0
SEGI_01615 Sequoiadendron giganteum HOM05D003668 ORTHO05D004242 7.8e-21 105.9 74 63.5
HanXRQChr02g0056061 Helianthus annuus HOM05D003668 ORTHO05D221127 1.6e-18 98.2 124 45.2
SHI16331 Sapria himalayana HOM05D000002 ORTHO05D000001 5.8e-16 89.7 113 40.7
Os05g0552500 Oryza sativa ssp. japonica HOM05D003668 ORTHO05D004242 3.8e-15 87.0 53 66.0
Nn6g35717 Nelumbo nucifera HOM05D003668 ORTHO05D004242 8.1e-10 69.3 41 73.2


User provided reference genes

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