Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.1e-43 179.5 84 100.0
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 1.1e-35 152.9 81 84.0
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 2.0e-34 148.7 87 80.5
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 4.6e-34 147.5 86 79.1
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 4.6e-34 147.5 83 80.7
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.3e-33 146.0 84 82.1
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.3e-33 146.0 84 82.1
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 3.0e-33 144.8 85 75.3
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 3.0e-33 144.8 84 81.0
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 3.9e-33 144.4 86 76.7
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 3.9e-33 144.4 84 77.4
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 5.0e-33 144.1 86 76.7
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 5.0e-33 144.1 84 76.2
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 1.1e-32 142.9 82 78.0
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 1.1e-32 142.9 86 77.9
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 1.1e-32 142.9 86 77.9
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.5e-32 142.5 84 79.8
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 2.5e-32 141.7 87 75.9
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 3.3e-32 141.4 84 77.4
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 3.3e-32 141.4 86 75.6
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 3.3e-32 141.4 86 76.7
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 3.3e-32 141.4 84 78.6
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 4.3e-32 141.0 84 77.4
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 4.3e-32 141.0 87 75.9
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 5.6e-32 140.6 84 77.4
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 7.3e-32 140.2 83 77.1
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 7.3e-32 140.2 84 77.4
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 7.3e-32 140.2 83 75.9
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 7.3e-32 140.2 87 74.7
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 7.3e-32 140.2 84 76.2
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 9.5e-32 139.8 84 76.2
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 9.5e-32 139.8 84 76.2
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 1.6e-31 139.0 84 77.4
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 1.6e-31 139.0 84 73.8
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 2.1e-31 138.7 80 76.2
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 2.1e-31 138.7 84 76.2
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 2.1e-31 138.7 84 76.2
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 2.1e-31 138.7 84 72.6
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 2.8e-31 138.3 85 74.1
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 3.6e-31 137.9 84 73.8
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 3.6e-31 137.9 84 77.4
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 4.7e-31 137.5 86 74.4
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 6.2e-31 137.1 86 74.4
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 6.2e-31 137.1 84 77.4
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 8.0e-31 136.7 84 73.8
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 8.0e-31 136.7 84 75.0
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 8.0e-31 136.7 86 74.4
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.1e-30 136.3 84 72.6
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.1e-30 136.3 84 72.6
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 1.4e-30 136.0 84 75.0
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 1.4e-30 136.0 84 75.0
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 1.4e-30 136.0 84 73.8
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 1.8e-30 135.6 87 71.3
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 1.8e-30 135.6 84 73.8
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 2.3e-30 135.2 84 76.2
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 2.3e-30 135.2 83 74.7
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 2.3e-30 135.2 86 75.6
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 2.3e-30 135.2 84 77.4
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 3.1e-30 134.8 84 75.0
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 3.1e-30 134.8 82 74.4
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 3.1e-30 134.8 84 72.6
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 3.1e-30 134.8 84 75.0
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 3.1e-30 134.8 84 75.0
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 3.1e-30 134.8 84 73.8
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.0e-30 134.4 84 71.4
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 4.0e-30 134.4 84 72.6
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 4.0e-30 134.4 84 75.0
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 5.2e-30 134.0 84 72.6
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 5.2e-30 134.0 85 71.8
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 5.2e-30 134.0 84 70.2
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 5.2e-30 134.0 84 70.2
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 5.2e-30 134.0 87 71.3
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 5.2e-30 134.0 84 72.6
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 6.8e-30 133.7 84 75.0
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 6.8e-30 133.7 77 80.5
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 8.9e-30 133.3 84 70.2
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 8.9e-30 133.3 84 71.4
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 8.9e-30 133.3 84 73.8
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 8.9e-30 133.3 84 71.4
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 8.9e-30 133.3 84 75.0
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.2e-29 132.9 87 73.6
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.2e-29 132.9 87 73.6
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.2e-29 132.9 84 73.8
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 1.2e-29 132.9 87 69.0
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 2.0e-29 132.1 80 75.0
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 2.0e-29 132.1 84 72.6
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 2.0e-29 132.1 84 73.8
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 2.0e-29 132.1 83 71.1
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 2.0e-29 132.1 84 73.8
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 2.0e-29 132.1 84 73.8
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 2.6e-29 131.7 81 74.1
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 2.6e-29 131.7 81 74.1
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 2.6e-29 131.7 87 70.1
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 2.6e-29 131.7 83 72.3
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 3.4e-29 131.3 87 73.6
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 3.4e-29 131.3 84 72.6
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 3.4e-29 131.3 81 74.1
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 3.4e-29 131.3 84 73.8
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 4.4e-29 131.0 84 72.6
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 4.4e-29 131.0 81 72.8
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 5.8e-29 130.6 84 71.4
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 5.8e-29 130.6 83 71.1
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 5.8e-29 130.6 84 71.4
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 7.5e-29 130.2 81 72.8
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 7.5e-29 130.2 84 72.6
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 7.5e-29 130.2 84 72.6
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 9.8e-29 129.8 83 72.3
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.3e-28 129.4 84 70.2
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 1.7e-28 129.0 82 70.7
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.7e-28 129.0 83 69.9
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 2.2e-28 128.6 84 71.4
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 2.2e-28 128.6 81 71.6
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 2.2e-28 128.6 85 68.2
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 2.2e-28 128.6 78 75.6
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 3.7e-28 127.9 74 78.4
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 6.4e-28 127.1 77 75.3
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 1.1e-27 126.3 84 70.2
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 1.1e-27 126.3 86 70.9
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 3.2e-27 124.8 83 69.9
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 7.0e-27 123.6 70 75.7
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 7.0e-27 123.6 70 75.7
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 9.2e-27 123.2 84 67.9
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 1.2e-26 122.9 87 66.7
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 1.0e-25 119.8 84 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 1.1e-24 116.3 84 67.9
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 1.5e-24 115.9 86 60.5
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.5e-24 115.2 74 68.9
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 4.3e-24 114.4 83 62.7
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 3.6e-23 111.3 83 63.9
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 4.7e-23 110.9 70 70.0
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 1.4e-22 109.4 74 68.9
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 1.8e-22 109.0 77 64.9
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 8.9e-22 106.7 51 90.2
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 4.4e-21 104.4 58 77.6
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 2.2e-20 102.1 54 83.3
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 1.6e-18 95.9 54 75.9
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 6.6e-17 90.5 62 69.4
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 8.6e-17 90.1 57 64.9
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 1.1e-16 89.7 60 56.7
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 2.4e-14 82.0 45 73.3
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 8.4e-12 73.6 59 50.8


User provided reference genes

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