Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 3.3e-133 478.4 247 100.0
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 9.1e-91 337.4 247 74.5
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 1.5e-88 330.1 254 70.9
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 6.1e-87 324.7 252 71.0
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 1.2e-82 310.5 250 69.6
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 1.8e-75 286.6 197 74.6
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 5.4e-75 285.0 218 68.3
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 5.4e-75 285.0 197 74.6
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 2.0e-74 283.1 211 70.6
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 2.7e-74 282.7 245 64.5
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 2.7e-74 282.7 240 64.6
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 2.7e-74 282.7 254 62.2
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 5.9e-74 281.6 244 62.7
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 1.0e-73 280.8 205 71.7
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.7e-73 280.0 197 71.6
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 3.9e-73 278.9 165 84.8
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 5.0e-73 278.5 252 59.9
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 5.0e-73 278.5 228 66.7
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.9e-72 276.6 216 68.1
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 2.5e-72 276.2 202 70.8
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 2.5e-72 276.2 190 74.2
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 5.6e-72 275.0 238 64.7
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 7.3e-72 274.6 224 62.5
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 9.5e-72 274.2 221 65.6
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 2.1e-71 273.1 204 70.1
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 2.1e-71 273.1 240 62.5
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 8.0e-71 271.2 200 69.5
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 8.0e-71 271.2 165 80.6
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 8.0e-71 271.2 196 74.0
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 8.0e-71 271.2 235 61.7
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.0e-70 270.8 204 71.1
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 1.0e-70 270.8 240 61.7
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 1.8e-70 270.0 236 60.2
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 3.1e-70 269.2 192 69.3
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 3.1e-70 269.2 211 68.7
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 4.0e-70 268.9 239 61.5
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 5.2e-70 268.5 204 71.1
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 6.8e-70 268.1 234 59.8
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 1.2e-69 267.3 229 63.8
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 1.5e-69 266.9 192 72.4
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 2.6e-69 266.2 209 66.5
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 4.4e-69 265.4 219 64.8
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 5.8e-69 265.0 165 78.2
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.3e-68 263.8 242 58.7
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 4.9e-68 261.9 229 62.4
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 1.4e-67 260.4 165 75.8
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 1.9e-67 260.0 244 59.4
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 2.4e-67 259.6 197 68.0
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 2.4e-67 259.6 191 70.2
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 3.2e-67 259.2 161 79.5
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 3.2e-67 259.2 191 70.2
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 5.4e-67 258.5 190 69.5
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 5.4e-67 258.5 243 58.0
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 7.0e-67 258.1 237 58.6
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 7.0e-67 258.1 195 67.7
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 1.2e-66 257.3 193 69.4
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 1.6e-66 256.9 190 69.5
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 1.6e-66 256.9 193 67.9
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 2.0e-66 256.5 236 58.1
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.7e-66 256.1 230 62.2
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 6.0e-66 255.0 232 61.2
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 7.8e-66 254.6 224 62.1
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 1.3e-65 253.8 232 59.1
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 1.7e-65 253.4 229 62.0
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 2.3e-65 253.1 229 59.0
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 2.3e-65 253.1 195 65.6
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 3.0e-65 252.7 224 61.2
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 3.0e-65 252.7 234 59.8
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 6.6e-65 251.5 168 73.8
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.1e-64 250.8 226 58.4
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.1e-64 250.8 226 58.4
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 1.1e-64 250.8 236 56.8
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 1.5e-64 250.4 195 65.6
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 2.5e-64 249.6 234 59.4
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 3.3e-64 249.2 219 60.3
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 5.6e-64 248.4 232 57.8
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 5.6e-64 248.4 231 58.4
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 7.3e-64 248.1 247 58.3
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 9.5e-64 247.7 232 56.9
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.6e-63 246.9 242 56.2
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 2.1e-63 246.5 191 68.1
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 2.1e-63 246.5 194 66.5
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 4.7e-63 245.4 237 57.0
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.3e-62 243.0 247 57.5
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 3.1e-62 242.7 204 64.2
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 1.5e-61 240.4 196 64.3
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 2.0e-61 240.0 228 58.3
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 2.0e-61 240.0 166 70.5
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 2.2e-60 236.5 197 66.0
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 3.7e-60 235.7 208 60.6
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 1.4e-59 233.8 213 58.7
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 9.2e-59 231.1 160 69.4
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.5e-58 229.2 250 50.8
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 4.6e-58 228.8 190 63.2
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 2.3e-57 226.5 182 61.5
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 1.1e-56 224.2 168 66.1
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 1.9e-56 223.4 140 77.1
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 1.2e-55 220.7 156 70.5
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.5e-53 213.8 225 55.6
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 2.9e-52 209.5 185 60.0
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 9.2e-51 204.5 158 66.5
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 2.8e-47 193.0 231 51.1
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.1e-46 189.5 156 59.6
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.1e-46 189.5 156 59.6
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 1.1e-43 181.0 165 60.0
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 2.5e-40 169.9 181 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 2.8e-39 166.4 161 50.9
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 7.6e-37 158.3 229 44.5
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 4.2e-35 152.5 195 47.2
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 2.7e-34 149.8 93 77.4
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 5.1e-33 145.6 158 47.5
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 9.6e-32 141.4 170 44.7
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 1.3e-31 141.0 82 82.9
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 2.1e-31 140.2 156 46.8
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.8e-29 132.1 82 78.0
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 1.9e-27 127.1 151 47.7
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 2.4e-27 126.7 85 71.8
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 7.1e-27 125.2 109 64.2
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 1.6e-26 124.0 159 40.3
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 7.9e-26 121.7 107 60.7
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 1.0e-25 121.3 107 58.9
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 6.7e-25 118.6 147 49.0
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 5.3e-22 109.0 98 56.1
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 1.0e-20 104.8 69 68.1
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 4.2e-19 99.4 148 44.6
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 2.5e-16 90.1 140 37.9
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-13 81.3 118 41.5
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 5.9e-13 79.0 98 51.0
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.5e-10 69.7 96 45.8
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 1.8e-09 67.4 100 41.0
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.9e-09 66.2 131 38.9
Eucgr.H05133 Eucalyptus grandis HOM05D006319 ORTHO05D193808 3.1e-06 56.6 55 56.4
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 9.0e-06 55.1 188 25.0


User provided reference genes

Program Settings