Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 5.9e-303 1043.5 562 100.0
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 7.8e-239 830.5 572 75.5
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 8.7e-222 773.9 566 70.5
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 4.0e-211 738.4 703 58.7
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 4.5e-202 708.4 528 71.8
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 7.1e-200 701.0 569 65.6
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 2.1e-199 699.5 563 65.9
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 7.9e-199 697.6 561 64.9
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 3.3e-197 692.2 565 65.0
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 9.0e-195 684.1 565 62.5
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 1.0e-193 680.6 563 62.7
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 1.4e-192 676.8 562 62.6
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 3.2e-192 675.6 547 64.4
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 1.6e-191 673.3 548 64.8
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 2.7e-191 672.5 569 62.2
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 3.9e-190 668.7 578 61.8
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 3.7e-188 662.1 560 63.0
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 3.7e-188 662.1 563 62.3
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 8.2e-188 661.0 565 61.6
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 1.4e-187 660.2 561 63.5
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 3.1e-187 659.1 553 62.9
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 4.1e-187 658.7 558 61.8
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 5.3e-187 658.3 557 63.4
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 2.2e-185 652.9 560 62.7
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 8.5e-185 651.0 555 62.2
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 8.5e-185 651.0 558 61.3
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 1.1e-184 650.6 556 63.3
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 1.9e-184 649.8 551 62.1
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 5.5e-184 648.3 558 61.5
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 9.4e-184 647.5 575 61.7
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 9.4e-184 647.5 554 62.5
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 2.1e-183 646.4 566 60.6
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 6.1e-183 644.8 519 64.0
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 1.0e-182 644.0 518 63.1
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 2.3e-182 642.9 567 60.3
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 3.0e-182 642.5 519 63.6
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 6.7e-182 641.3 569 59.4
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 9.7e-181 637.5 556 59.7
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 4.8e-180 635.2 559 59.4
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 8.2e-180 634.4 556 59.5
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.4e-179 633.6 521 62.4
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.8e-179 633.3 521 62.4
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 3.1e-179 632.5 519 63.2
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.2e-178 630.6 520 62.3
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.7e-177 626.7 521 62.2
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 1.1e-176 624.0 560 58.4
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 2.5e-176 622.9 564 58.0
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 3.2e-176 622.5 555 58.4
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 5.5e-176 621.7 555 58.2
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 5.5e-176 621.7 574 61.8
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 9.4e-176 620.9 552 58.7
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 1.6e-175 620.2 551 59.5
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 2.1e-175 619.8 552 58.7
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 4.7e-175 618.6 568 58.1
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 6.1e-175 618.2 557 58.2
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 1.4e-174 617.1 557 60.7
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 6.7e-174 614.8 513 62.2
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 8.8e-174 614.4 557 60.3
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 2.0e-173 613.2 521 63.9
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 5.7e-173 611.7 555 57.8
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 7.4e-173 611.3 569 57.8
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 7.4e-173 611.3 551 58.3
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.3e-172 610.5 713 53.2
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 4.8e-172 608.6 596 55.9
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 4.8e-172 608.6 568 57.7
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 8.2e-172 607.8 557 57.1
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 1.4e-171 607.1 558 57.5
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 4.1e-171 605.5 557 58.2
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 3.5e-170 602.4 557 57.8
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 4.5e-170 602.1 576 56.6
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 1.0e-169 600.9 585 56.2
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 1.7e-169 600.1 560 56.1
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 8.5e-169 597.8 555 56.9
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 2.5e-168 596.3 561 56.1
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 7.2e-168 594.7 559 58.5
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 7.2e-168 594.7 565 56.6
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 3.0e-166 589.3 562 56.9
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 2.6e-165 586.3 560 55.7
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 5.7e-165 585.1 562 55.7
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 1.8e-163 580.1 567 55.9
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 5.9e-162 575.1 408 70.6
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 1.3e-161 573.9 560 54.6
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 2.9e-161 572.8 431 66.4
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.5e-160 570.5 561 55.3
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 3.2e-160 569.3 564 56.6
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 7.2e-160 568.2 562 53.7
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 4.7e-159 565.5 528 55.7
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 1.4e-158 563.9 597 51.9
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 6.8e-158 561.6 559 53.8
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 2.2e-156 556.6 586 52.6
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 8.3e-156 554.7 559 53.3
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.4e-155 553.9 559 53.1
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 7.7e-154 548.1 562 53.6
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 1.0e-153 547.7 557 53.7
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 3.8e-153 545.8 537 54.2
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 5.0e-153 545.4 564 53.5
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 8.6e-153 544.7 564 52.7
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 5.6e-152 542.0 564 53.0
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 4.4e-149 532.3 566 53.2
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 4.1e-147 525.8 608 50.0
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 8.9e-142 508.1 564 49.6
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 1.5e-141 507.3 558 53.6
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 2.0e-141 506.9 528 53.6
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.0e-137 494.6 491 57.2
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 3.1e-134 483.0 574 50.5
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 1.7e-116 424.1 361 60.4
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 4.9e-116 422.5 319 67.1
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 7.1e-115 418.7 340 64.7
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.3e-111 407.9 308 67.5
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 2.8e-111 406.8 335 63.0
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 1.0e-97 361.7 380 51.3
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 1.3e-97 361.3 532 38.0
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 2.3e-97 360.5 407 50.9
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 1.3e-95 354.8 326 58.9
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 9.6e-88 328.6 555 37.7
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 3.1e-86 323.6 534 35.0
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 5.3e-86 322.8 543 37.6
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 9.0e-86 322.0 354 49.7
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 1.4e-78 298.1 519 35.5
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 1.4e-78 298.1 421 44.9
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 5.0e-76 289.7 348 47.7
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.1e-75 288.5 341 49.6
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 7.7e-69 265.8 247 59.1
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 4.1e-62 243.4 232 57.8
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 2.6e-61 240.7 147 76.9
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 8.0e-58 229.2 149 74.5
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 1.3e-55 221.9 167 65.9
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 1.4e-54 218.4 235 51.9
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.8e-54 218.0 132 79.5
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 2.9e-52 210.7 134 75.4
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 3.2e-51 207.2 138 68.8
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.8e-41 174.9 97 79.4
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 3.4e-40 170.6 579 27.3
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.8e-36 157.1 99 77.8
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.5e-35 155.2 85 85.9
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 9.2e-30 136.0 124 60.5
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.0e-28 130.2 84 78.6
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.9e-22 111.7 116 57.8
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.4e-22 111.3 141 48.9
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 2.4e-22 111.3 158 38.0
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 6.0e-21 106.7 53 88.7
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 1.6e-18 98.6 141 43.3
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.3e-15 89.0 89 53.9
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 2.9e-15 87.8 123 46.3
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 4.9e-15 87.0 155 42.6
Rhsim01G0150500 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.4e-14 85.5 88 59.1
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 6.6e-12 76.6 122 41.8
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 4.7e-10 70.5 54 55.6
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 8.9e-09 66.2 121 36.4
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 5.8e-08 63.5 83 41.0
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.9e-07 61.2 89 39.3
Rhsim01G0140000 Rhododendron simsii HOM05D020172 ORTHO05D018188 1.9e-06 58.5 49 65.3


User provided reference genes

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