Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.0e-88 330.1 169 100.0
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 4.0e-37 158.7 173 57.8
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.2e-36 157.1 160 64.4
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 4.4e-36 155.2 174 55.7
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 9.8e-36 154.1 162 58.0
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 2.0e-33 146.4 163 56.4
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.0e-32 144.1 124 67.7
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 1.7e-32 143.3 162 55.6
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 1.7e-32 143.3 162 55.6
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 2.3e-32 142.9 162 58.6
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 1.1e-31 140.6 160 55.0
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 1.9e-31 139.8 162 52.5
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 3.3e-31 139.0 163 52.8
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 7.3e-31 137.9 162 53.7
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 1.2e-30 137.1 172 53.5
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.2e-30 137.1 163 58.3
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 1.6e-30 136.7 178 52.2
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 2.8e-30 136.0 164 56.1
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 6.1e-30 134.8 168 54.2
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 8.0e-30 134.4 158 53.2
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 1.8e-29 133.3 158 54.4
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 1.8e-29 133.3 158 54.4
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.8e-29 133.3 158 52.5
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 3.1e-29 132.5 170 52.4
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 6.8e-29 131.3 159 55.3
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 1.2e-28 130.6 172 50.6
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.0e-28 129.8 158 50.6
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 3.4e-28 129.0 161 49.7
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 4.4e-28 128.6 158 55.7
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 4.4e-28 128.6 166 50.6
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.4e-28 128.6 161 50.3
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.8e-28 128.3 158 51.9
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 7.5e-28 127.9 159 52.2
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 7.5e-28 127.9 159 52.2
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 7.5e-28 127.9 159 52.2
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 1.3e-27 127.1 150 54.7
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 3.7e-27 125.6 158 50.6
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 1.9e-26 123.2 153 52.3
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 3.2e-26 122.5 141 56.7
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 3.2e-26 122.5 148 52.7
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.6e-25 120.2 133 56.4
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 1.6e-25 120.2 113 63.7
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 2.0e-25 119.8 113 68.1
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 2.7e-25 119.4 115 60.9
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 2.7e-25 119.4 170 47.1
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 3.5e-25 119.0 158 50.0
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 4.6e-25 118.6 170 48.2
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 6.0e-25 118.2 172 47.7
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 1.0e-24 117.5 155 51.6
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.3e-24 117.1 173 48.6
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 2.3e-24 116.3 174 46.0
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 3.0e-24 115.9 173 46.8
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 3.0e-24 115.9 171 49.1
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 3.9e-24 115.5 178 47.2
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 6.6e-24 114.8 156 48.7
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 6.6e-24 114.8 175 44.0
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 8.6e-24 114.4 133 49.6
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 1.1e-23 114.0 112 60.7
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 5.6e-23 111.7 172 43.6
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 5.6e-23 111.7 171 43.9
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 5.6e-23 111.7 171 43.9
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 9.5e-23 110.9 166 47.6
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 1.2e-22 110.5 169 45.6
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 1.2e-22 110.5 175 45.7
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 1.2e-22 110.5 128 53.9
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.6e-22 110.2 172 43.0
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.1e-22 109.8 158 48.1
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 2.8e-22 109.4 169 47.3
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 3.6e-22 109.0 87 66.7
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 6.2e-22 108.2 177 44.1
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 8.0e-22 107.8 170 48.8
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 8.0e-22 107.8 169 47.3
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.1e-21 107.5 109 59.6
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.4e-21 107.1 158 47.5
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.4e-21 107.1 158 47.5
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 1.4e-21 107.1 171 46.8
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.8e-21 106.7 110 58.2
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 3.1e-21 105.9 127 50.4
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 6.8e-21 104.8 166 45.8
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 8.9e-21 104.4 164 45.7
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 1.5e-20 103.6 167 44.3
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 2.0e-20 103.2 159 45.9
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 2.6e-20 102.8 176 43.2
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 2.6e-20 102.8 169 43.8
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 4.4e-20 102.1 164 46.3
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 9.8e-20 100.9 104 58.7
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.3e-19 100.5 127 47.2
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 1.7e-19 100.1 118 54.2
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 1.7e-19 100.1 174 43.7
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 2.2e-19 99.8 173 44.5
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 2.9e-19 99.4 174 43.7
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 2.9e-19 99.4 176 44.3
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 3.7e-19 99.0 148 47.3
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 4.9e-19 98.6 174 43.7
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 8.3e-19 97.8 179 44.1
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 1.1e-18 97.4 149 46.3
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.9e-18 96.7 172 44.8
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 3.2e-18 95.9 179 43.6
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 3.2e-18 95.9 152 44.7
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 4.1e-18 95.5 173 39.9
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 5.4e-18 95.1 174 42.5
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 5.4e-18 95.1 175 44.6
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 5.4e-18 95.1 132 50.0
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 5.4e-18 95.1 161 44.1
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 7.0e-18 94.7 168 45.2
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 7.0e-18 94.7 169 43.8
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 9.2e-18 94.4 162 43.2
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 9.2e-18 94.4 175 38.9
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 1.2e-17 94.0 178 42.1
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 1.6e-17 93.6 169 43.2
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.6e-17 93.6 169 43.2
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 1.6e-17 93.6 148 45.3
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 1.6e-17 93.6 198 39.9
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 4.6e-17 92.0 154 44.2
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 6.0e-17 91.7 178 41.0
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 1.3e-16 90.5 151 45.7
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 1.3e-16 90.5 151 44.4
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.7e-16 90.1 153 43.8
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 2.3e-16 89.7 153 44.4
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 8.6e-16 87.8 169 40.8
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 8.6e-16 87.8 149 45.0
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 8.6e-16 87.8 153 45.1
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 3.3e-15 85.9 198 37.4
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 4.3e-15 85.5 182 41.8
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 7.3e-15 84.7 156 41.0
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 6.2e-14 81.6 173 40.5
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 4.0e-13 79.0 106 51.9
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 5.2e-13 78.6 88 52.3
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 6.8e-13 78.2 150 38.7
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.2e-12 77.4 148 41.9
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 4.4e-12 75.5 125 43.2
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 5.8e-12 75.1 158 41.1
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 7.1e-10 68.2 119 42.9
ECA246G0037 Erigeron canadensis HOM05D005335 ORTHO05D006472 1.6e-09 67.0 159 37.7
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 1.6e-09 67.0 162 37.7
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.6e-09 67.0 150 38.7
EL10Ac8g19493 Beta vulgaris HOM05D000179 ORTHO05D000107 8.6e-08 61.2 81 43.2
CiPaw.05G159500 Carya illinoinensis HOM05D000179 ORTHO05D000107 4.3e-07 58.9 171 31.6
unitig_8.g4035 Utricularia gibba HOM05D005335 ORTHO05D006472 4.3e-07 58.9 123 39.0
HPP92_019339 Vanilla planifolia HOM05D000179 ORTHO05D000107 7.3e-07 58.2 141 32.6
MSTRG.9361 Avicennia marina HOM05D000179 ORTHO05D000107 1.2e-06 57.4 82 36.6
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 1.2e-06 57.4 85 38.8
Nitab4.5_0002870g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.1e-06 56.6 156 30.8
Nitab4.5_0002202g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.8e-06 56.2 148 28.4
Duzib068G0009 Durio zibethinus HOM05D000179 ORTHO05D000107 3.6e-06 55.8 82 36.6
Oeu047494.1 Olea europaea HOM05D005335 ORTHO05D006472 3.6e-06 55.8 73 39.7
DCAR_030310 Daucus carota HOM05D000179 ORTHO05D000107 4.7e-06 55.5 77 39.0
Nitab4.5_0000521g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 4.7e-06 55.5 149 30.9
Peaxi162Scf00033g02311 Petunia axillaris HOM05D000179 ORTHO05D000107 4.7e-06 55.5 76 38.2
Peaxi162Scf00171g00727 Petunia axillaris HOM05D000179 ORTHO05D000107 6.2e-06 55.1 152 30.9


User provided reference genes

Program Settings