Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 7.1e-256 886.7 437 100.0
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.1e-245 852.8 437 96.1
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.5e-233 810.4 437 92.7
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.8e-206 722.6 448 79.0
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 6.3e-204 714.1 437 79.2
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 3.3e-200 701.8 441 77.3
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 3.2e-195 685.3 444 75.7
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 9.2e-195 683.7 444 75.7
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 2.7e-194 682.2 444 75.5
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 5.6e-192 674.5 442 75.1
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 7.3e-192 674.1 444 73.9
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 3.6e-191 671.8 442 75.3
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 3.6e-191 671.8 446 73.1
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 2.3e-190 669.1 444 72.7
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 6.8e-190 667.5 448 73.4
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 2.0e-189 666.0 445 74.2
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 2.2e-188 662.5 440 71.8
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 4.9e-188 661.4 444 71.2
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 6.4e-188 661.0 443 72.2
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 6.4e-188 661.0 444 73.2
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.6e-186 656.4 443 71.8
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.9e-184 649.4 447 71.4
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.6e-183 646.4 442 71.7
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.1e-183 646.0 444 70.9
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 2.8e-183 645.6 440 70.2
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 3.6e-183 645.2 442 70.8
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 4.7e-183 644.8 442 70.8
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 8.1e-183 644.0 441 70.3
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 1.1e-182 643.7 449 71.7
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 2.3e-182 642.5 441 70.1
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 5.2e-182 641.3 441 70.1
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 1.2e-181 640.2 444 70.9
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 2.6e-181 639.0 439 72.9
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 3.4e-181 638.6 441 69.8
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 4.4e-181 638.3 449 70.2
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 4.4e-181 638.3 444 71.2
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 5.8e-181 637.9 441 69.6
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 7.5e-181 637.5 441 70.3
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 3.7e-180 635.2 443 70.7
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.4e-179 633.3 448 69.2
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.0e-177 627.1 445 70.1
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.0e-177 627.1 445 70.1
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 3.9e-177 625.2 436 70.2
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 6.6e-177 624.4 436 70.4
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 9.5e-176 620.5 444 69.4
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.2e-175 620.2 445 69.2
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 2.8e-175 619.0 434 69.1
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 8.1e-175 617.5 435 68.3
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 2.4e-174 615.9 442 66.3
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 3.1e-174 615.5 448 66.1
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.0e-174 615.1 452 68.4
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 5.2e-174 614.8 424 69.6
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.2e-173 613.6 446 67.9
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 2.0e-173 612.8 412 74.3
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 2.0e-173 612.8 443 67.5
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 2.6e-173 612.5 436 67.7
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.4e-173 612.1 452 67.9
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 4.4e-173 611.7 435 68.0
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 5.4e-171 604.7 413 70.5
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 1.2e-170 603.6 434 67.3
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 1.6e-170 603.2 431 68.2
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 1.6e-170 603.2 435 66.2
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 1.0e-169 600.5 440 67.3
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 1.0e-169 600.5 440 67.3
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 1.0e-169 600.5 439 66.1
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.1e-168 597.0 429 67.6
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.5e-168 596.7 429 70.9
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.5e-168 596.7 429 70.9
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 3.3e-168 595.5 403 73.2
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 5.6e-168 594.7 442 65.6
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 7.3e-168 594.3 451 65.9
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 4.7e-167 591.7 429 66.7
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 8.1e-167 590.9 445 64.9
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 5.3e-166 588.2 437 67.0
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 7.6e-165 584.3 411 69.1
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 1.7e-164 583.2 411 67.6
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 1.9e-163 579.7 429 68.8
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 5.4e-163 578.2 432 65.5
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 1.2e-162 577.0 436 64.9
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 1.6e-162 576.6 422 65.6
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 3.5e-162 575.5 456 62.5
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 5.1e-161 571.6 435 67.1
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 6.2e-159 564.7 433 65.1
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 4.0e-158 562.0 428 64.5
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 9.0e-158 560.8 455 62.6
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 1.2e-157 560.5 432 64.4
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.5e-157 560.1 365 71.8
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 3.4e-157 558.9 442 64.5
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.4e-155 553.5 444 63.1
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 1.9e-155 553.1 440 63.4
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 1.9e-155 553.1 436 64.7
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.2e-155 552.0 441 65.1
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 5.4e-155 551.6 436 64.2
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 5.4e-155 551.6 392 68.6
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 7.1e-155 551.2 439 61.7
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 7.1e-155 551.2 449 61.7
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.8e-153 546.6 440 63.4
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.0e-153 545.8 441 64.4
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 3.0e-153 545.8 422 62.3
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 6.7e-153 544.7 443 63.4
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 4.3e-152 542.0 433 63.5
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 5.6e-152 541.6 435 63.9
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 5.6e-152 541.6 342 75.7
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 8.1e-151 537.7 439 62.9
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 5.3e-150 535.0 445 61.8
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.1e-147 527.3 444 61.5
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.4e-147 526.9 437 62.5
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 3.2e-147 525.8 437 62.7
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 9.3e-147 524.2 441 63.0
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 9.3e-147 524.2 441 63.0
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.7e-146 522.7 379 67.0
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 6.0e-146 521.5 440 61.6
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 6.0e-146 521.5 442 61.3
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.0e-146 521.5 350 72.0
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.9e-144 516.5 336 71.7
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 1.9e-144 516.5 449 57.7
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.5e-144 516.2 350 69.7
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 5.7e-144 515.0 440 58.4
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 5.7e-144 515.0 411 61.3
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 6.9e-142 508.1 449 57.2
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 3.4e-141 505.8 357 69.7
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.0e-140 504.2 434 61.3
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.6e-135 486.9 356 68.0
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 2.4e-134 483.0 319 72.4
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.8e-126 456.8 437 55.6
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.3e-121 439.9 321 65.7
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 8.5e-116 421.4 354 61.0
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 2.3e-113 413.3 318 64.8
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 2.3e-113 413.3 318 64.8
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.8e-110 403.7 375 57.9
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 8.8e-97 358.2 422 46.7
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 4.4e-96 355.9 378 50.3
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 4.3e-83 312.8 232 64.2
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 6.4e-71 272.3 190 69.5
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.1e-70 269.6 244 58.2
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.0e-68 265.0 373 43.7
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 7.3e-67 258.8 146 82.2
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.5e-59 234.6 158 69.0
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 9.9e-56 221.9 257 48.2
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 5.3e-41 172.9 142 59.2
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.7e-37 160.6 107 68.2
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 5.8e-32 142.9 138 57.2
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 4.9e-31 139.8 109 67.9
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 4.2e-30 136.7 110 65.5
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 5.7e-27 126.3 99 58.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.0e-15 89.0 51 74.5
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 9.1e-09 65.9 67 49.3


User provided reference genes

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