Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 0.0e+00 1492.6 741 100.0
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 0.0e+00 1206.8 792 78.2
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1169.1 739 76.7
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 0.0e+00 1149.4 740 76.1
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 0.0e+00 1144.0 740 75.7
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 0.0e+00 1128.2 731 77.0
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 0.0e+00 1122.8 751 74.7
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 0.0e+00 1119.0 730 76.0
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 0.0e+00 1119.0 737 73.9
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 0.0e+00 1114.4 730 76.3
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1112.4 730 75.8
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 0.0e+00 1109.7 733 73.7
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 0.0e+00 1109.4 735 75.1
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 0.0e+00 1106.7 736 75.3
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 0.0e+00 1104.4 736 72.8
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 0.0e+00 1102.4 737 73.8
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1102.0 732 74.6
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 0.0e+00 1096.6 737 73.5
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 0.0e+00 1096.6 737 73.5
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1092.0 730 75.1
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 0.0e+00 1089.3 739 72.7
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 0.0e+00 1088.6 709 74.5
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 0.0e+00 1088.2 730 74.8
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1088.2 729 74.2
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1086.6 734 73.7
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 0.0e+00 1085.9 727 72.8
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 0.0e+00 1081.2 737 72.3
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1080.5 732 72.1
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 0.0e+00 1080.1 737 72.2
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1079.3 737 72.2
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 0.0e+00 1078.5 739 71.6
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1077.0 735 72.4
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1077.0 737 72.0
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.6e-311 1070.8 732 72.0
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 3.2e-309 1064.7 735 72.2
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 9.4e-309 1063.1 729 71.5
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 2.7e-308 1061.6 723 72.2
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 4.7e-308 1060.8 730 73.7
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.0e-307 1059.7 730 73.7
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 3.0e-307 1058.1 731 71.5
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 8.8e-307 1056.6 741 70.6
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 2.8e-305 1051.6 726 72.0
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 3.7e-305 1051.2 687 75.8
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 5.4e-304 1047.3 723 71.5
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 2.0e-303 1045.4 745 71.3
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 2.3e-302 1042.0 729 71.2
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 2.9e-302 1041.6 734 70.7
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 2.9e-302 1041.6 723 71.2
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 2.9e-302 1041.6 739 70.0
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 2.5e-301 1038.5 614 84.4
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 8.0e-300 1033.5 741 73.4
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 8.0e-300 1033.5 742 69.3
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 3.0e-299 1031.6 735 70.6
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 2.6e-298 1028.5 754 70.2
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 7.5e-298 1026.9 735 69.3
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 1.1e-296 1023.1 734 70.3
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 5.4e-296 1020.8 740 68.5
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 7.0e-296 1020.4 730 69.5
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 2.5e-293 1011.9 740 68.1
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 9.5e-293 1010.0 734 67.7
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 4.7e-292 1007.7 781 65.8
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 1.0e-291 1006.5 734 67.6
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 3.1e-291 1005.0 731 68.1
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 3.1e-291 1005.0 731 67.4
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 4.9e-289 997.7 742 69.7
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 1.9e-288 995.7 735 69.9
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 5.6e-285 984.2 740 67.0
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 9.2e-280 966.8 635 73.5
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 4.6e-279 964.5 709 68.5
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 1.3e-278 963.0 735 65.9
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 3.9e-278 961.4 831 60.5
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 4.7e-268 927.9 743 64.2
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 2.2e-265 919.1 730 64.0
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 1.4e-264 916.4 732 65.8
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 7.6e-258 894.0 560 78.2
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 9.3e-256 887.1 730 61.1
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 7.9e-255 884.0 733 61.8
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 3.9e-254 881.7 727 60.9
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 4.8e-252 874.8 735 60.7
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 3.1e-251 872.1 730 60.5
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 3.1e-251 872.1 730 60.5
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 2.6e-250 869.0 681 64.8
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 4.9e-249 864.8 730 60.3
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 7.9e-247 857.4 731 60.1
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 1.1e-245 853.6 731 59.6
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 2.4e-243 845.9 732 59.6
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 4.5e-242 841.6 639 66.5
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 2.1e-239 832.8 741 57.8
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 2.7e-239 832.4 739 59.8
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 9.7e-229 797.3 642 62.0
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 9.1e-219 764.2 484 78.1
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 6.7e-214 748.0 488 77.5
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 1.0e-206 724.2 485 72.4
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.5e-205 720.3 629 59.3
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 8.5e-201 704.5 739 51.8
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 4.4e-181 639.0 489 63.6
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 1.8e-179 633.6 476 66.2
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 2.0e-173 613.6 475 65.1
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 7.5e-173 611.7 454 69.4
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 1.6e-170 604.0 757 45.2
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 1.7e-169 600.5 761 45.6
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 7.1e-163 578.6 492 60.2
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 1.9e-152 543.9 432 61.8
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.5e-149 534.3 416 65.4
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 1.9e-147 527.3 708 43.6
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 3.1e-142 510.0 381 66.1
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 7.9e-138 495.4 433 61.2
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 3.4e-133 479.9 701 41.5
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 2.2e-124 450.7 777 37.1
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 3.5e-122 443.4 750 37.2
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 3.3e-120 436.8 315 72.1
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 2.4e-118 430.6 327 65.7
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.5e-117 427.9 389 60.2
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 1.7e-116 424.5 308 69.5
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 7.7e-93 345.9 245 72.2
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 6.1e-90 336.3 192 84.4
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 4.7e-74 283.5 202 64.9
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-54 219.2 326 42.3
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 2.1e-50 204.9 162 67.9
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.7e-47 195.3 143 72.7
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 2.1e-45 188.3 150 63.3
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.4e-41 175.6 103 81.6
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 2.9e-39 167.9 159 53.5
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 7.8e-37 159.8 102 72.5
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 1.2e-32 146.0 138 55.8
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.7e-31 142.1 280 36.4
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.8e-29 133.3 126 59.5
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 3.9e-28 131.0 553 25.7
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 2.8e-26 124.8 162 45.7
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 4.0e-25 120.9 610 23.9
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.3e-23 115.9 95 63.2
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.0e-21 107.1 88 61.4
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.8e-20 105.5 115 60.0
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 3.0e-20 104.8 74 67.6
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 6.2e-18 97.1 76 61.8
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.2e-16 92.8 61 72.1
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 4.9e-15 87.4 56 75.0
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 1.1e-14 86.3 51 84.3
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 6.0e-13 80.5 52 71.2
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 3.0e-12 78.2 50 72.0
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 2.0e-08 65.5 99 40.4
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 5.8e-08 63.9 46 60.9
COL.COLO4_37048 Corchorus olitorius HOM05D005191 ORTHO05D006725 1.0e-07 63.2 40 70.0
arahy.Tifrunner.gnm1.ann1.GZYG19 Arachis hypogaea HOM05D000607 ORTHO05D000518 2.5e-06 58.5 37 67.6
COL.COLO4_06980 Corchorus olitorius HOM05D005191 ORTHO05D006725 3.2e-06 58.2 37 67.6


User provided reference genes

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