Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012175 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D012430 4.4e-39 164.1 79 100.0
CSS0021673 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D012430 4.4e-39 164.1 79 100.0
Dinv25326 Davidia involucrata HOM05D000751 ORTHO05D000889 9.6e-18 93.2 85 60.0
Dinv11375 Davidia involucrata HOM05D000751 ORTHO05D000889 2.8e-17 91.7 86 61.6
Actinidia20786 Actinidia chinensis HOM05D000751 ORTHO05D000889 1.4e-16 89.4 85 60.0
Hund03727 Selenicereus undatus HOM05D000751 ORTHO05D000889 4.5e-15 84.3 80 60.0
Actinidia11516 Actinidia chinensis HOM05D000751 ORTHO05D000889 7.6e-15 83.6 80 62.5
CSS0039519 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D012430 2.9e-14 81.6 77 58.4
Ah.08g209610 Amaranthus hybridus HOM05D000751 ORTHO05D000889 1.1e-13 79.7 82 54.9
EL10Ac7g17072 Beta vulgaris HOM05D000751 ORTHO05D000889 1.1e-13 79.7 81 54.3
Nitab4.5_0003003g0020 Nicotiana tabacum HOM05D000751 ORTHO05D000889 1.1e-13 79.7 98 46.9
AUR62029704 Chenopodium quinoa HOM05D000751 ORTHO05D000889 1.4e-13 79.3 83 53.0
AUR62006371 Chenopodium quinoa HOM05D000751 ORTHO05D000889 2.1e-12 75.5 83 51.8
Peaxi162Scf00732g00435 Petunia axillaris HOM05D000751 ORTHO05D000889 4.6e-12 74.3 63 57.1
CANSAT35G1451 Cannabis sativa HOM05D000751 ORTHO05D000889 6.0e-12 73.9 52 69.2
ClCG04G006390 Citrullus lanatus HOM05D000751 ORTHO05D000889 1.8e-11 72.4 61 57.4
TAR369G0772 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.8e-11 72.4 73 53.4
MELO3C025212.2 Cucumis melo HOM05D000751 ORTHO05D000889 2.3e-11 72.0 61 57.4
Ciclev10011044m.g Citrus clementina HOM05D000751 ORTHO05D000889 3.0e-11 71.6 88 51.1
Sp5g10650 Schrenkiella parvula HOM05D000751 ORTHO05D000889 3.0e-11 71.6 64 57.8
TAR633G1193 Trochodendron aralioides HOM05D000751 ORTHO05D000889 3.0e-11 71.6 95 48.4
CsaV3_4G027110 Cucumis sativus L. HOM05D000751 ORTHO05D000889 3.9e-11 71.2 61 57.4
FAN05G0807 Fragaria x ananassa HOM05D000751 ORTHO05D000889 3.9e-11 71.2 92 48.9
CiPaw.10G164500 Carya illinoinensis HOM05D000751 ORTHO05D000889 5.1e-11 70.9 61 55.7
Cc06_g00480 Coffea canephora HOM05D000751 ORTHO05D000889 6.7e-11 70.5 75 52.0
BcaNung00374 Brassica carinata HOM05D000751 ORTHO05D000889 8.7e-11 70.1 72 48.6
Gohir.A02G004000 Gossypium hirsutum HOM05D000751 ORTHO05D000889 8.7e-11 70.1 87 50.6
Gohir.D02G004400 Gossypium hirsutum HOM05D000751 ORTHO05D000889 8.7e-11 70.1 87 50.6
Gorai.005G005000 Gossypium raimondii HOM05D000751 ORTHO05D000889 8.7e-11 70.1 87 50.6
RcHm_v2.0_Chr3g0460811 Rosa chinensis HOM05D000751 ORTHO05D000889 8.7e-11 70.1 87 49.4
Thhalv10010169m.g Eutrema salsugineum HOM05D000751 ORTHO05D000889 1.1e-10 69.7 64 54.7
FAN05G3756 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.1e-10 69.7 69 56.5
Aa31sc296G60 Aethionema arabicum HOM05D000751 ORTHO05D000889 1.5e-10 69.3 72 54.2
FvH4_6g10110 Fragaria vesca HOM05D000751 ORTHO05D000889 1.5e-10 69.3 57 61.4
FAN02G3208 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.5e-10 69.3 57 61.4
FAN14G5618 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.5e-10 69.3 57 61.4
BcaC09g50101 Brassica carinata HOM05D000751 ORTHO05D000889 1.9e-10 68.9 71 49.3
C01p28950 Brassica napus HOM05D000751 ORTHO05D000889 1.9e-10 68.9 71 49.3
BolC1t02826H Brassica oleracea HOM05D000751 ORTHO05D000889 1.9e-10 68.9 71 49.3
BraA01t02240Z Brassica rapa HOM05D000751 ORTHO05D000889 1.9e-10 68.9 71 49.3
CARHR161210 Cardamine hirsuta HOM05D000751 ORTHO05D000889 1.9e-10 68.9 58 60.3
Prupe.6G291600 Prunus persica HOM05D000751 ORTHO05D000889 1.9e-10 68.9 52 61.5
Thecc.04G153800 Theobroma cacao HOM05D000751 ORTHO05D000889 1.9e-10 68.9 52 63.5
Hma1.2p1_1052F.1_g252300 Hydrangea macrophylla HOM05D000751 ORTHO05D000889 2.5e-10 68.6 81 50.6
A01p23310 Brassica napus HOM05D000751 ORTHO05D000889 3.3e-10 68.2 71 47.9
A03p48390 Brassica napus HOM05D000751 ORTHO05D000889 3.3e-10 68.2 56 57.1
BraA03t13946Z Brassica rapa HOM05D000751 ORTHO05D000889 3.3e-10 68.2 56 57.1
AL5G32060 Arabidopsis lyrata HOM05D000751 ORTHO05D000889 4.3e-10 67.8 80 48.8
CiPaw.09G219700 Carya illinoinensis HOM05D000751 ORTHO05D000889 4.3e-10 67.8 50 62.0
Oeu024001.1 Olea europaea HOM05D000751 ORTHO05D000889 4.3e-10 67.8 63 52.4
Gohir.D02G004500 Gossypium hirsutum HOM05D000751 ORTHO05D000889 5.6e-10 67.4 87 50.6
Gorai.005G005100 Gossypium raimondii HOM05D000751 ORTHO05D000889 5.6e-10 67.4 87 50.6
GSVIVG01024577001 Vitis vinifera HOM05D000751 ORTHO05D000889 5.6e-10 67.4 62 54.8
BcaC06g33337 Brassica carinata HOM05D000751 ORTHO05D000889 7.4e-10 67.0 56 55.4
Cfa017054 Carpinus fangiana HOM05D000751 ORTHO05D000889 7.4e-10 67.0 73 56.2
FAN09G1566 Fragaria x ananassa HOM05D000751 ORTHO05D000889 7.4e-10 67.0 57 59.6
MD12G1186100 Malus domestica HOM05D000751 ORTHO05D000889 7.4e-10 67.0 59 54.2
Manes.08G174000 Manihot esculenta HOM05D000751 ORTHO05D000889 7.4e-10 67.0 89 49.4
Thecc.09G362800 Theobroma cacao HOM05D000751 ORTHO05D000889 7.4e-10 67.0 86 43.0
AT3G51620 Arabidopsis thaliana HOM05D000751 ORTHO05D000889 9.6e-10 66.6 79 49.4
COL.COLO4_16549 Corchorus olitorius HOM05D000751 ORTHO05D012430 9.6e-10 66.6 90 46.7
Gohir.A02G004100 Gossypium hirsutum HOM05D000751 ORTHO05D000889 9.6e-10 66.6 62 53.2
Solyc09g018160.3 Solanum lycopersicum HOM05D000751 ORTHO05D000889 9.6e-10 66.6 65 49.2
Oeu057993.1 Olea europaea HOM05D000751 ORTHO05D000889 1.3e-09 66.2 63 50.8
TAR623G0489 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.3e-09 66.2 62 54.8
Aqoxy2G00716 Aquilegia oxysepala HOM05D000751 ORTHO05D000889 1.6e-09 65.9 83 48.2
MD11G1054900 Malus domestica HOM05D000751 ORTHO05D000889 1.6e-09 65.9 77 48.1
ATR0681G301 Amborella trichopoda HOM05D000751 ORTHO05D000889 2.1e-09 65.5 79 44.3
C07p46430 Brassica napus HOM05D000751 ORTHO05D000889 2.1e-09 65.5 56 53.6
BolC7t45160H Brassica oleracea HOM05D000751 ORTHO05D000889 2.1e-09 65.5 56 53.6
MD04G1172800 Malus domestica HOM05D000751 ORTHO05D000889 2.1e-09 65.5 52 59.6
Sopen09g010800 Solanum pennellii HOM05D000751 ORTHO05D000889 2.1e-09 65.5 65 47.7
GSVIVG01030201001 Vitis vinifera HOM05D000751 ORTHO05D000889 2.8e-09 65.1 88 42.0
Atru.chr8.2384 Acer truncatum HOM05D000751 ORTHO05D000889 3.7e-09 64.7 79 51.9
Ah.15g090130 Amaranthus hybridus HOM05D000751 ORTHO05D012430 3.7e-09 64.7 72 52.8
Lj2C1100G3 Lonicera japonica HOM05D000751 ORTHO05D000889 4.8e-09 64.3 63 49.2
MBI15_g40104_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 4.8e-09 64.3 53 56.6
Duzib212G0506 Durio zibethinus HOM05D000751 ORTHO05D000889 6.2e-09 63.9 71 53.5
Lalb_Chr17g0345611 Lupinus albus HOM05D000751 ORTHO05D000889 6.2e-09 63.9 62 48.4
Sed0006675 Sechium edule HOM05D000751 ORTHO05D000889 6.2e-09 63.9 91 45.1
TWI77G0574 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 6.2e-09 63.9 82 42.7
Sc02g0000860 Simmondsia chinensis HOM05D000751 ORTHO05D000889 8.1e-09 63.5 52 57.7
Carub.0005s1798 Capsella rubella HOM05D000751 ORTHO05D000889 1.1e-08 63.2 64 50.0
Duzib151G0240 Durio zibethinus HOM05D000751 ORTHO05D000889 1.4e-08 62.8 87 44.8
Lalb_Chr10g0103781 Lupinus albus HOM05D000751 ORTHO05D000889 1.4e-08 62.8 86 43.0
Manes.09G116700 Manihot esculenta HOM05D000751 ORTHO05D000889 1.4e-08 62.8 65 52.3
THA.LOC104806642 Tarenaya hassleriana HOM05D000751 ORTHO05D000889 1.4e-08 62.8 76 50.0
Atru.chr12.166 Acer truncatum HOM05D000751 ORTHO05D000889 1.8e-08 62.4 63 49.2
Lj1g0012110 Lotus japonicus HOM05D000751 ORTHO05D000889 1.8e-08 62.4 75 48.0
Dinv28724 Davidia involucrata HOM05D000751 ORTHO05D000889 2.4e-08 62.0 63 46.0
QL01p025054 Quercus lobata HOM05D000751 ORTHO05D000889 2.4e-08 62.0 62 46.8
QL07p032538 Quercus lobata HOM05D000751 ORTHO05D000889 2.4e-08 62.0 52 61.5
Ca_05703_v3 Cicer arietinum L. HOM05D000751 ORTHO05D000889 3.1e-08 61.6 79 44.3
Atru.chr1.2513 Acer truncatum HOM05D000751 ORTHO05D000889 4.0e-08 61.2 62 46.8
Lalb_Chr04g0251761 Lupinus albus HOM05D000751 ORTHO05D000889 4.0e-08 61.2 80 42.5
SEGI_25351 Sequoiadendron giganteum HOM05D000751 ORTHO05D012430 4.0e-08 61.2 63 49.2
Actinidia23844 Actinidia chinensis HOM05D000751 ORTHO05D000889 5.3e-08 60.8 82 41.5
Duzib268G1287 Durio zibethinus HOM05D000751 ORTHO05D000889 5.3e-08 60.8 83 50.6
Nn5g26870 Nelumbo nucifera HOM05D000751 ORTHO05D000889 5.3e-08 60.8 75 46.7
PSO384G3107 Papaver somniferum HOM05D000751 ORTHO05D000889 5.3e-08 60.8 57 49.1
MSTRG.18949 Avicennia marina HOM05D000751 ORTHO05D000889 6.9e-08 60.5 60 48.3
Nitab4.5_0000002g0240 Nicotiana tabacum HOM05D000751 ORTHO05D000889 6.9e-08 60.5 71 42.3
Nitab4.5_0001868g0010 Nicotiana tabacum HOM05D000751 ORTHO05D000889 6.9e-08 60.5 71 42.3
PSO339G3673 Papaver somniferum HOM05D000751 ORTHO05D000889 6.9e-08 60.5 57 47.4
Sed0007496 Sechium edule HOM05D000751 ORTHO05D000889 6.9e-08 60.5 58 50.0
PGSC0003DMG400030464 Solanum tuberosum HOM05D000751 ORTHO05D000889 6.9e-08 60.5 60 46.7
Sopen06g033860 Solanum pennellii HOM05D000751 ORTHO05D000889 9.0e-08 60.1 60 46.7
CANSAT56G3596 Cannabis sativa HOM05D000751 ORTHO05D000889 1.2e-07 59.7 63 46.0
Ciclev10031278m.g Citrus clementina HOM05D000751 ORTHO05D000889 1.2e-07 59.7 86 43.0
Glyma.19G092300 Glycine max HOM05D000751 ORTHO05D000889 1.2e-07 59.7 64 50.0
Ca_30741_v3 Cicer arietinum L. HOM05D000751 ORTHO05D012430 1.5e-07 59.3 73 45.2
FAN03G1567 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.5e-07 59.3 73 42.5
Phvul.009G141400 Phaseolus vulgaris HOM05D000751 ORTHO05D000889 1.5e-07 59.3 68 45.6
RcHm_v2.0_Chr1g0372011 Rosa chinensis HOM05D000751 ORTHO05D000889 1.5e-07 59.3 59 50.8
ClCG03G000110 Citrullus lanatus HOM05D000751 ORTHO05D000889 2.0e-07 58.9 68 45.6
Phvul.008G248100 Phaseolus vulgaris HOM05D000751 ORTHO05D000889 2.0e-07 58.9 62 46.8
Sabra19G0126500 Salix brachista HOM05D000751 ORTHO05D000889 2.6e-07 58.5 62 48.4
Sc07g0005870 Simmondsia chinensis HOM05D000751 ORTHO05D000889 2.6e-07 58.5 53 49.1
Glyma.14G203800 Glycine max HOM05D000751 ORTHO05D000889 3.4e-07 58.2 62 45.2
LjContig00141g0016337 Lotus japonicus HOM05D000751 ORTHO05D000889 3.4e-07 58.2 62 45.2
MD03G1053200 Malus domestica HOM05D000751 ORTHO05D000889 3.4e-07 58.2 74 44.6
Psat2g051200 Pisum sativum HOM05D000751 ORTHO05D000889 3.4e-07 58.2 79 40.5
Potri.013G154900 Populus trichocarpa HOM05D000751 ORTHO05D000889 3.4e-07 58.2 62 46.8
Potri.019G128800 Populus trichocarpa HOM05D000751 ORTHO05D000889 3.4e-07 58.2 62 46.8
Solyc06g082480.3 Solanum lycopersicum HOM05D000751 ORTHO05D000889 3.4e-07 58.2 60 45.0
VMungo1309G0124 Vigna mungo HOM05D000751 ORTHO05D000889 3.4e-07 58.2 64 45.3
CAN.G404.1 Capsicum annuum HOM05D000751 ORTHO05D000889 4.5e-07 57.8 60 45.0
FAN25G2826 Fragaria x ananassa HOM05D000751 ORTHO05D000889 4.5e-07 57.8 63 42.9
VMungo1309G2653 Vigna mungo HOM05D000751 ORTHO05D000889 4.5e-07 57.8 68 44.1
CSS0006115 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D000889 5.8e-07 57.4 62 45.2
RcHm_v2.0_Chr5g0072681 Rosa chinensis HOM05D000751 ORTHO05D000889 5.8e-07 57.4 60 43.3
Cfa011820 Carpinus fangiana HOM05D000751 ORTHO05D000889 7.6e-07 57.0 60 43.3
FAN10G1507 Fragaria x ananassa HOM05D000751 ORTHO05D000889 7.6e-07 57.0 53 50.9
Glyma.16G055700 Glycine max HOM05D000751 ORTHO05D000889 7.6e-07 57.0 66 45.5
Medtr5g075260 Medicago truncatula HOM05D000751 ORTHO05D000889 7.6e-07 57.0 69 44.9
Nn1g01852 Nelumbo nucifera HOM05D000751 ORTHO05D000889 7.6e-07 57.0 54 48.1
RcHm_v2.0_Chr5g0042801 Rosa chinensis HOM05D000751 ORTHO05D012430 7.6e-07 57.0 87 43.7
RcHm_v2.0_Chr5g0071001 Rosa chinensis HOM05D000751 ORTHO05D012430 7.6e-07 57.0 87 43.7
vmacro02885 Vaccinium macrocarpon HOM05D000751 ORTHO05D000889 7.6e-07 57.0 62 38.7
Glyma.02G235800 Glycine max HOM05D000751 ORTHO05D000889 9.9e-07 56.6 63 44.4
Glyma.06G176600 Glycine max HOM05D000751 ORTHO05D000889 9.9e-07 56.6 68 42.6
VMungo0647G2031 Vigna mungo HOM05D000751 ORTHO05D012430 9.9e-07 56.6 56 48.2
FAN16G2683 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.3e-06 56.2 63 39.7
Peaxi162Scf00095g01211 Petunia axillaris HOM05D000751 ORTHO05D012430 1.3e-06 56.2 61 42.6
SalBow5G0723 Salvia bowleyana HOM05D000751 ORTHO05D000889 1.3e-06 56.2 66 45.5
SalBow5G1146 Salvia bowleyana HOM05D000751 ORTHO05D000889 1.3e-06 56.2 66 45.5
SMO367G1101 Selaginella moellendorffii HOM05D000751 ORTHO05D000889 1.3e-06 56.2 52 51.9
TWI53G1535 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 1.3e-06 56.2 52 46.2
arahy.Tifrunner.gnm1.ann1.G52PLI Arachis hypogaea HOM05D000751 ORTHO05D000889 1.7e-06 55.8 62 43.5
arahy.Tifrunner.gnm1.ann1.LCX1I7 Arachis hypogaea HOM05D000751 ORTHO05D000889 1.7e-06 55.8 62 43.5
Ciclev10023855m.g Citrus clementina HOM05D000751 ORTHO05D000889 1.7e-06 55.8 54 46.3
FvH4_3g40330 Fragaria vesca HOM05D000751 ORTHO05D000889 1.7e-06 55.8 63 39.7
FAN11G0969 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.7e-06 55.8 63 39.7
Glyma.19G092500 Glycine max HOM05D000751 ORTHO05D000889 1.7e-06 55.8 66 43.9
TAR374G0065 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.7e-06 55.8 54 46.3
TAR374G0274 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.7e-06 55.8 54 46.3
CAN.G5.22 Capsicum annuum HOM05D000751 ORTHO05D000889 2.2e-06 55.5 52 48.1
Cpa.g.sc19.74 Carica papaya HOM05D000751 ORTHO05D000889 2.2e-06 55.5 68 45.6
CDE12G0085 Ceratophyllum demersum HOM05D000751 ORTHO05D000889 2.2e-06 55.5 77 44.2
PGR031G2288 Punica granatum HOM05D000751 ORTHO05D000889 2.2e-06 55.5 76 40.8
Rhsim13G0060500 Rhododendron simsii HOM05D000751 ORTHO05D000889 2.2e-06 55.5 56 46.4
SEGI_41234 Sequoiadendron giganteum HOM05D000751 ORTHO05D000889 2.2e-06 55.5 54 50.0
TWI74G1085 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 2.2e-06 55.5 82 39.0
Cfa003812 Carpinus fangiana HOM05D000751 ORTHO05D000889 2.9e-06 55.1 52 50.0
Glyma.04G189100 Glycine max HOM05D000751 ORTHO05D000889 2.9e-06 55.1 65 46.2
Cpa.g.sc86.43 Carica papaya HOM05D000751 ORTHO05D012430 3.8e-06 54.7 60 50.0
Haze_24457 Corylus avellana HOM05D000751 ORTHO05D000889 3.8e-06 54.7 60 41.7
Os11g0114700 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D000889 3.8e-06 54.7 66 43.9
TAR629G1929 Trochodendron aralioides HOM05D000751 ORTHO05D000889 3.8e-06 54.7 54 44.4
Ah.07g205960 Amaranthus hybridus HOM05D000751 ORTHO05D000889 4.9e-06 54.3 61 44.3
CDE04G2975 Ceratophyllum demersum HOM05D000751 ORTHO05D000889 4.9e-06 54.3 81 40.7
FAN21G1322 Fragaria x ananassa HOM05D000751 ORTHO05D000889 4.9e-06 54.3 63 39.7
Medtr3g094210 Medicago truncatula HOM05D000751 ORTHO05D000889 4.9e-06 54.3 52 48.1
Os12g0283100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D000889 4.9e-06 54.3 54 44.4
Sabra13G0124800 Salix brachista HOM05D000751 ORTHO05D000889 4.9e-06 54.3 56 48.2
TAR375G0110 Trochodendron aralioides HOM05D000751 ORTHO05D000889 4.9e-06 54.3 54 44.4
Nn3g19032 Nelumbo nucifera HOM05D000751 ORTHO05D000889 6.4e-06 53.9 54 46.3
Rhsim03G0200200 Rhododendron simsii HOM05D000751 ORTHO05D000889 6.4e-06 53.9 53 47.2
Gohir.D11G101200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 8.4e-06 53.5 54 46.3
Manes.05G024100 Manihot esculenta HOM05D000751 ORTHO05D000889 8.4e-06 53.5 76 40.8
Phvul.009G141900 Phaseolus vulgaris HOM05D000751 ORTHO05D000889 8.4e-06 53.5 50 46.0
QL08p064669 Quercus lobata HOM05D000751 ORTHO05D000889 8.4e-06 53.5 60 50.0
vmacro06560 Vaccinium macrocarpon HOM05D000751 ORTHO05D000889 8.4e-06 53.5 53 47.2


User provided reference genes

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