Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 1.5e-308 1062.0 526 100.0
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.4e-258 895.2 519 86.3
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 3.7e-251 871.3 519 82.1
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 4.2e-234 814.7 524 75.8
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 4.6e-225 784.6 505 76.0
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 7.8e-225 783.9 519 73.2
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.0e-224 783.5 523 73.8
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 4.3e-223 778.1 504 76.2
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 8.1e-222 773.9 523 72.8
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 1.5e-220 769.6 502 76.1
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.5e-220 769.6 521 73.7
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 5.8e-220 767.7 528 73.5
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 6.4e-219 764.2 532 71.8
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 8.4e-219 763.8 522 72.0
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 5.4e-218 761.1 522 72.0
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.6e-217 759.6 490 75.5
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 4.6e-217 758.1 510 73.7
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.0e-216 756.9 529 71.1
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 1.3e-216 756.5 459 80.8
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 4.3e-215 751.5 483 74.5
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 9.6e-215 750.4 523 69.8
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 1.6e-214 749.6 522 71.6
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 6.9e-213 744.2 520 71.9
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.5e-212 743.0 519 69.9
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 2.9e-211 738.8 512 69.1
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 2.9e-211 738.8 503 70.4
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 3.8e-211 738.4 495 70.3
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 3.8e-211 738.4 494 74.3
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 3.8e-211 738.4 519 68.0
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 4.9e-211 738.0 519 70.7
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 8.4e-211 737.3 537 69.5
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 2.5e-210 735.7 483 74.3
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 9.3e-210 733.8 520 68.8
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 1.6e-209 733.0 519 70.9
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 3.5e-209 731.9 519 67.6
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 4.6e-209 731.5 523 67.5
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 4.6e-209 731.5 523 70.2
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 6.0e-209 731.1 519 67.8
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.8e-208 729.6 520 69.6
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 5.7e-207 724.5 519 69.0
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 5.7e-207 724.5 519 67.6
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 9.6e-207 723.8 544 69.1
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 2.1e-206 722.6 520 68.7
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 6.2e-206 721.1 523 66.7
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 8.2e-206 720.7 516 65.9
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 8.2e-206 720.7 521 69.1
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 2.4e-205 719.2 524 66.8
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 2.4e-205 719.2 511 69.7
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 3.1e-205 718.8 533 65.7
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 9.0e-205 717.2 506 68.6
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 2.6e-204 715.7 520 66.9
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 3.4e-204 715.3 504 67.9
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 5.8e-204 714.5 524 69.8
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 7.6e-204 714.1 528 67.4
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 1.3e-203 713.4 521 69.5
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 2.2e-203 712.6 494 70.9
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 5.0e-203 711.4 505 67.9
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 6.5e-203 711.1 487 71.0
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.9e-202 709.5 534 66.3
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 3.2e-202 708.8 510 69.6
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 9.3e-202 707.2 510 69.2
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.2e-201 706.8 510 69.2
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 2.7e-201 705.7 510 67.6
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 7.9e-201 704.1 503 67.2
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.0e-200 702.2 510 68.6
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 3.9e-200 701.8 519 68.6
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 6.7e-200 701.0 470 72.8
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 4.3e-199 698.4 520 66.5
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 5.3e-197 691.4 493 68.6
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.3e-195 686.8 471 72.0
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 2.1e-193 679.5 509 67.0
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 3.0e-192 675.6 509 67.2
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 3.9e-192 675.2 402 83.6
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 1.5e-191 673.3 524 65.1
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 2.0e-191 672.9 476 69.1
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 8.2e-190 667.5 495 66.3
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 5.3e-189 664.8 523 65.0
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 1.2e-188 663.7 498 67.7
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 2.6e-188 662.5 496 65.7
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 7.7e-188 661.0 494 67.0
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 7.7e-188 661.0 494 67.0
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 6.5e-187 657.9 481 68.8
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 4.2e-186 655.2 493 66.3
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 1.6e-185 653.3 529 62.6
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 1.0e-184 650.6 441 70.7
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 3.1e-181 639.0 492 63.6
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 2.6e-180 636.0 502 62.5
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 3.7e-174 615.5 437 67.5
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 1.1e-173 614.0 479 63.3
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 3.5e-172 609.0 488 62.5
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 5.0e-171 605.1 398 75.1
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 3.0e-168 595.9 588 53.6
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 8.5e-163 577.8 343 81.3
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 2.7e-161 572.8 526 57.6
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 7.5e-159 564.7 402 71.9
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 5.4e-157 558.5 531 53.5
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 5.4e-157 558.5 531 53.5
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.9e-155 552.7 508 52.6
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 5.6e-154 548.5 358 72.9
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 3.6e-153 545.8 468 56.4
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 8.0e-153 544.7 373 71.8
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 3.0e-152 542.7 358 73.7
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 8.9e-144 514.6 399 63.7
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 1.4e-141 507.3 403 62.8
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 3.1e-136 489.6 506 56.7
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 7.1e-133 478.4 364 68.1
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.2e-127 461.1 457 56.0
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 6.2e-121 438.7 470 51.3
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 4.0e-120 436.0 519 48.4
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 4.0e-112 409.5 392 56.4
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 2.1e-105 387.1 264 71.2
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 7.6e-87 325.5 461 39.0
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 2.5e-82 310.5 238 66.8
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.3e-66 256.9 219 59.4
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.1e-56 225.3 135 80.0
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 4.1e-56 223.4 181 65.7
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 2.8e-49 200.7 160 63.8
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 5.0e-46 189.9 182 54.4
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 2.5e-45 187.6 153 59.5
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 2.6e-42 177.6 478 29.9
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 7.5e-42 176.0 146 63.0
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 1.0e-38 165.6 121 65.3
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 1.7e-33 148.3 104 62.5
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 4.1e-32 143.7 133 60.2
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 7.3e-29 132.9 107 61.7
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 7.3e-29 132.9 107 61.7
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 7.3e-29 132.9 107 61.7
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 3.1e-27 127.5 75 77.3
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 1.2e-26 125.6 90 65.6
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 2.5e-21 107.8 74 67.6
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.8e-19 101.7 55 83.6
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.8e-11 75.1 292 26.7
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 5.8e-10 70.1 79 50.6
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 3.5e-07 60.8 231 25.1
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 6.0e-07 60.1 108 34.3
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 1.3e-06 58.9 215 26.0
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 2.3e-06 58.2 233 30.5
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 3.9e-06 57.4 236 28.0
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 3.9e-06 57.4 250 25.2
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 3.9e-06 57.4 239 28.9
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 6.6e-06 56.6 324 24.1
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 8.6e-06 56.2 251 26.7


User provided reference genes

Program Settings