Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 2.8e-291 1004.6 517 100.0
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 7.4e-252 873.6 502 85.7
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.6e-251 872.5 496 84.9
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 3.7e-251 871.3 496 85.3
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 4.1e-250 867.8 496 85.7
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 5.3e-250 867.5 496 84.1
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 9.1e-250 866.7 496 84.1
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.6e-249 865.1 496 83.9
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 1.7e-248 862.4 496 83.3
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 6.5e-248 860.5 496 86.1
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 8.5e-248 860.1 496 83.3
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 9.4e-247 856.7 496 83.1
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 3.6e-246 854.7 498 82.7
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 6.1e-246 854.0 496 82.7
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 1.4e-245 852.8 504 81.9
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.1e-244 849.7 496 83.1
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.6e-244 848.6 496 83.1
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 1.3e-243 846.3 496 83.3
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.2e-243 845.5 496 82.1
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.2e-243 845.5 496 82.1
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.1e-242 843.2 496 81.9
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 3.1e-242 841.6 496 82.5
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.2e-241 839.7 495 82.0
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 2.0e-241 839.0 496 82.1
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 3.4e-241 838.2 496 82.7
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.9e-241 837.4 496 82.1
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 1.0e-240 836.6 514 80.4
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 3.8e-240 834.7 496 81.5
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 3.8e-240 834.7 496 81.5
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 3.8e-240 834.7 496 81.5
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 6.5e-240 833.9 495 82.8
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 1.1e-239 833.2 499 80.6
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 1.4e-239 832.8 496 80.2
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 3.2e-239 831.6 496 80.2
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 4.2e-239 831.2 496 80.6
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.2e-238 829.7 503 80.9
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 1.6e-238 829.3 496 81.5
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 2.7e-238 828.6 496 80.4
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.7e-238 828.6 496 80.2
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 3.6e-238 828.2 499 80.8
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 3.6e-238 828.2 497 80.7
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 3.9e-237 824.7 496 80.4
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 3.9e-237 824.7 599 70.8
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 5.2e-237 824.3 503 79.7
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 8.8e-237 823.5 498 78.5
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 2.6e-236 822.0 496 80.2
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.6e-236 822.0 478 82.2
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 3.3e-236 821.6 496 79.8
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 3.3e-236 821.6 496 78.8
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 3.3e-236 821.6 499 79.4
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 3.3e-236 821.6 498 81.1
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 9.7e-236 820.1 503 79.5
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 1.3e-235 819.7 499 79.6
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 2.8e-235 818.5 497 80.3
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 4.8e-235 817.8 499 80.0
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 6.3e-235 817.4 516 77.5
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 6.3e-235 817.4 497 80.5
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 6.3e-235 817.4 497 80.7
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.1e-234 816.6 516 77.5
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.4e-234 816.2 516 77.5
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 1.8e-234 815.8 475 81.5
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 2.4e-234 815.5 496 79.4
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 3.1e-234 815.1 470 82.8
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 3.1e-234 815.1 496 78.8
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 5.3e-234 814.3 496 80.4
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.6e-233 812.8 496 79.2
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 2.0e-233 812.4 496 79.0
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 4.5e-233 811.2 496 78.6
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.5e-233 811.2 516 77.1
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 4.5e-233 811.2 504 80.6
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 7.7e-233 810.4 499 80.6
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.0e-232 810.1 496 80.8
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 3.8e-232 808.1 496 80.4
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 5.0e-232 807.7 517 77.0
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.9e-231 805.8 515 77.1
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.9e-231 805.8 505 78.8
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.9e-231 805.8 496 79.6
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.6e-230 802.7 480 81.2
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.7e-230 802.0 515 76.7
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 6.1e-230 800.8 496 81.9
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 1.4e-229 799.7 481 81.7
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.2e-228 796.6 496 77.8
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 2.6e-228 795.4 499 78.2
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 7.5e-228 793.9 496 78.2
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 7.5e-228 793.9 500 76.4
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 7.5e-228 793.9 497 77.7
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 1.7e-227 792.7 496 76.8
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 2.2e-227 792.3 505 76.4
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 1.4e-226 789.6 502 76.5
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 7.0e-226 787.3 499 77.0
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 7.0e-226 787.3 501 76.8
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 1.2e-225 786.6 499 77.0
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 1.2e-225 786.6 507 75.1
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 1.6e-225 786.2 500 76.8
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 1.6e-225 786.2 496 77.0
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 2.7e-225 785.4 500 77.2
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 3.5e-225 785.0 499 79.0
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 7.7e-225 783.9 499 76.8
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 9.4e-223 776.9 496 75.4
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 2.7e-222 775.4 498 75.7
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 3.6e-222 775.0 511 75.1
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 4.7e-222 774.6 530 74.3
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 8.0e-222 773.9 442 83.7
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.0e-221 773.5 496 75.8
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.4e-221 773.1 496 75.4
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.4e-221 773.1 496 75.2
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 3.0e-221 771.9 496 74.8
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 3.0e-221 771.9 498 75.5
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.0e-221 771.5 496 75.2
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 5.2e-221 771.2 498 75.5
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 2.0e-220 769.2 495 75.2
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 2.6e-220 768.8 495 74.5
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 4.4e-220 768.1 496 76.2
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 7.5e-220 767.3 498 75.1
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 9.8e-220 766.9 496 74.6
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 9.8e-220 766.9 498 74.7
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 2.2e-219 765.8 495 74.1
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 2.2e-219 765.8 496 74.4
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 8.3e-219 763.8 495 73.9
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 1.2e-217 760.0 741 57.1
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 1.5e-215 753.1 499 75.6
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 1.8e-210 736.1 484 71.7
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 3.5e-209 731.9 486 71.8
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.7e-206 721.5 502 72.1
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 1.1e-202 710.3 393 86.8
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.9e-195 685.6 790 49.2
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 1.1e-194 683.7 416 78.1
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 4.7e-190 668.3 490 66.7
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 2.2e-179 632.9 496 66.1
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 6.4e-179 631.3 345 89.0
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 7.3e-175 617.8 496 64.9
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.1e-173 614.0 493 62.5
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.6e-167 591.7 437 69.3
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 6.0e-161 571.6 425 69.9
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.8e-160 570.1 347 76.1
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 2.6e-148 529.6 312 84.3
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 2.9e-139 499.6 493 50.7
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.2e-131 473.4 448 60.0
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 1.5e-119 434.1 331 60.1
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 8.8e-104 381.7 393 48.1
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.2e-95 354.8 383 46.5
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.6e-92 344.4 525 37.7
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 7.3e-90 335.5 188 86.2
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.0e-77 292.4 209 68.4
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 1.9e-74 284.3 381 41.7
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.1e-65 254.2 367 35.7
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.3e-51 208.4 224 52.2
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 4.8e-49 199.9 137 67.9
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 1.7e-46 191.4 125 71.2
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 4.6e-44 183.3 114 81.6
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.0e-43 182.2 137 79.6
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.0e-43 182.2 137 79.6
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.6e-33 148.3 82 82.9
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 2.6e-31 141.0 82 79.3
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 1.0e-30 139.0 123 61.8
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.1e-29 135.6 72 86.1
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.7e-20 104.4 109 56.9
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 2.6e-15 87.8 57 71.9
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 6.5e-14 83.2 51 74.5
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 8.5e-14 82.8 47 78.7


User provided reference genes

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