Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.7e-45 185.7 92 100.0
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 3.0e-31 138.3 86 79.1
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 4.8e-29 131.0 86 76.7
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 3.8e-26 121.3 84 72.6
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.1e-25 119.8 86 72.1
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.7e-21 105.9 88 65.9
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 3.7e-21 104.8 65 72.3
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 6.3e-21 104.0 85 58.8
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.6e-19 99.4 86 57.0
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 4.5e-19 97.8 65 66.2
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 4.5e-19 97.8 65 66.2
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 5.9e-19 97.4 87 57.5
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 7.7e-19 97.1 84 58.3
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 2.2e-18 95.5 76 60.5
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.9e-18 95.1 54 77.8
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.9e-18 95.1 54 77.8
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 5.0e-18 94.4 66 66.7
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 5.0e-18 94.4 56 75.0
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 6.5e-18 94.0 58 72.4
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 6.5e-18 94.0 85 54.1
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 8.5e-18 93.6 65 66.2
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.1e-17 93.2 57 80.7
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.5e-17 92.8 86 61.6
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 1.5e-17 92.8 54 75.9
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 1.5e-17 92.8 83 54.2
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.9e-17 92.4 65 66.2
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.9e-17 92.4 85 51.8
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 1.9e-17 92.4 65 63.1
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 2.5e-17 92.0 76 57.9
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 2.5e-17 92.0 67 67.2
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.5e-17 92.0 85 55.3
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.5e-17 92.0 85 55.3
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.5e-17 92.0 85 55.3
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 2.5e-17 92.0 62 66.1
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 2.5e-17 92.0 56 71.4
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 4.2e-17 91.3 64 64.1
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 4.2e-17 91.3 65 61.5
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 5.5e-17 90.9 56 69.6
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 5.5e-17 90.9 82 56.1
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 1.2e-16 89.7 84 53.6
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.2e-16 89.7 57 71.9
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 1.6e-16 89.4 76 56.6
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.6e-16 89.4 76 56.6
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.6e-16 89.4 76 56.6
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.6e-16 89.4 76 56.6
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 2.1e-16 89.0 77 59.7
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 2.8e-16 88.6 79 53.2
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 2.8e-16 88.6 79 53.2
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 2.8e-16 88.6 54 70.4
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.7e-16 87.8 54 74.1
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.7e-16 87.8 54 74.1
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 4.7e-16 87.8 54 74.1
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 4.7e-16 87.8 57 77.2
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 4.7e-16 87.8 55 72.7
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 6.1e-16 87.4 80 51.2
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 1.0e-15 86.7 54 75.9
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.4e-15 86.3 54 72.2
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.4e-15 86.3 66 56.1
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 1.8e-15 85.9 65 60.0
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 2.3e-15 85.5 53 73.6
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 2.3e-15 85.5 53 73.6
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.3e-15 85.5 66 54.5
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 2.3e-15 85.5 84 50.0
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 2.3e-15 85.5 64 59.4
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 3.0e-15 85.1 65 56.9
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 4.0e-15 84.7 64 59.4
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 4.0e-15 84.7 54 72.2
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 4.0e-15 84.7 65 58.5
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 4.0e-15 84.7 76 55.3
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 4.0e-15 84.7 57 70.2
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 4.0e-15 84.7 57 70.2
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 5.2e-15 84.3 53 71.7
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 5.2e-15 84.3 62 59.7
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 6.8e-15 84.0 53 69.8
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 6.8e-15 84.0 78 53.8
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 6.8e-15 84.0 80 55.0
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 8.8e-15 83.6 82 48.8
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.2e-14 83.2 64 57.8
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.2e-14 83.2 65 60.0
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.2e-14 83.2 54 64.8
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 1.2e-14 83.2 62 58.1
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 1.2e-14 83.2 62 58.1
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 2.0e-14 82.4 53 69.8
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 2.0e-14 82.4 67 55.2
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 3.4e-14 81.6 53 69.8
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 5.7e-14 80.9 52 69.2
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.7e-13 79.3 65 60.0
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 2.2e-13 79.0 56 69.6
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 2.8e-13 78.6 83 49.4
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 2.8e-13 78.6 56 64.3
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 2.8e-13 78.6 65 56.9
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 3.7e-13 78.2 86 47.7
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 3.7e-13 78.2 86 47.7
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.3e-13 77.4 53 67.9
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.3e-13 77.4 53 67.9
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.3e-13 77.4 53 67.9
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.3e-13 77.4 53 67.9
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 8.3e-13 77.0 45 73.3
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.1e-12 76.6 50 66.0
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-12 76.6 53 67.9
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-12 76.6 53 67.9
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-12 76.6 53 67.9
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-12 76.6 53 67.9
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-12 76.6 53 67.9
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 3.1e-12 75.1 65 55.4
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 5.4e-12 74.3 65 50.8
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 7.0e-12 73.9 56 64.3
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.2e-11 73.2 43 67.4
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.2e-11 73.2 43 67.4
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.2e-11 73.2 65 52.3
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 2.7e-11 72.0 45 71.1
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.7e-11 72.0 44 70.5
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 3.5e-11 71.6 75 52.0
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 4.5e-11 71.2 71 57.7
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 7.8e-11 70.5 68 58.8
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.8e-11 70.5 45 68.9
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 7.8e-11 70.5 47 68.1
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.8e-11 70.5 44 68.2
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.3e-10 69.7 71 53.5
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 1.1e-09 66.6 53 60.4
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 5.6e-09 64.3 61 44.3
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.6e-08 62.8 44 61.4
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 8.0e-08 60.5 54 53.7
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.8e-07 59.3 51 56.9
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 1.8e-07 59.3 51 56.9
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 2.3e-07 58.9 45 55.6
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 4.0e-07 58.2 55 50.9


User provided reference genes

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