Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 8.7e-69 263.5 128 100.0
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.0e-48 196.8 100 97.0
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.5e-23 111.3 54 98.1
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 4.0e-21 105.1 54 88.9
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.4e-20 101.7 66 72.7
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.7e-19 99.8 54 85.2
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 2.2e-19 99.4 54 81.5
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 3.7e-19 98.6 54 81.5
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 3.1e-18 95.5 54 79.6
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.1e-18 95.5 54 83.3
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 7.7e-17 90.9 55 69.1
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.7e-16 89.7 54 72.2
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 3.8e-16 88.6 54 70.4
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 3.8e-16 88.6 54 72.2
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 3.8e-16 88.6 55 74.5
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 3.8e-16 88.6 56 67.9
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 3.8e-16 88.6 52 76.9
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 5.0e-16 88.2 61 67.2
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 5.0e-16 88.2 54 68.5
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 5.0e-16 88.2 54 72.2
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 5.0e-16 88.2 56 67.9
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 8.5e-16 87.4 54 75.9
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 8.5e-16 87.4 54 70.4
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 1.1e-15 87.0 62 62.9
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.9e-15 86.3 54 68.5
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.5e-15 85.9 54 72.2
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.2e-15 85.5 55 72.7
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 5.5e-15 84.7 61 63.9
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 5.5e-15 84.7 54 68.5
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 5.5e-15 84.7 54 68.5
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 7.2e-15 84.3 54 70.4
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 7.2e-15 84.3 54 68.5
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 1.2e-14 83.6 54 68.5
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.2e-14 83.6 55 70.9
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 1.6e-14 83.2 54 68.5
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 2.1e-14 82.8 61 62.3
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 2.1e-14 82.8 54 66.7
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 2.7e-14 82.4 53 69.8
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 2.7e-14 82.4 53 67.9
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.6e-14 82.0 57 61.4
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 3.6e-14 82.0 58 62.1
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 3.6e-14 82.0 54 66.7
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 6.1e-14 81.3 54 66.7
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 6.1e-14 81.3 54 61.1
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 8.0e-14 80.9 57 59.6
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 8.0e-14 80.9 51 68.6
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 1.0e-13 80.5 54 64.8
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.4e-13 80.1 54 66.7
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 1.4e-13 80.1 61 62.3
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 1.4e-13 80.1 54 57.4
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.8e-13 79.7 54 64.8
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 1.8e-13 79.7 54 61.1
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 2.3e-13 79.3 57 59.6
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 3.0e-13 79.0 54 63.0
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 3.0e-13 79.0 58 62.1
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 5.2e-13 78.2 54 64.8
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 6.8e-13 77.8 54 55.6
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 6.8e-13 77.8 58 62.1
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 8.8e-13 77.4 57 59.6
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 8.8e-13 77.4 53 60.4
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 8.8e-13 77.4 54 55.6
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 1.2e-12 77.0 61 50.8
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 2.0e-12 76.3 54 63.0
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 2.0e-12 76.3 54 63.0
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 2.0e-12 76.3 54 61.1
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 2.6e-12 75.9 54 59.3
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 2.6e-12 75.9 54 55.6
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 3.4e-12 75.5 54 59.3
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 4.4e-12 75.1 54 57.4
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 4.4e-12 75.1 57 57.9
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 5.7e-12 74.7 54 61.1
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 5.7e-12 74.7 54 59.3
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 7.5e-12 74.3 48 68.8
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 9.8e-12 73.9 54 61.1
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 9.8e-12 73.9 54 55.6
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 9.8e-12 73.9 54 55.6
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 9.8e-12 73.9 54 55.6
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 9.8e-12 73.9 58 56.9
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 1.7e-11 73.2 54 57.4
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.7e-11 73.2 54 59.3
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 2.2e-11 72.8 54 59.3
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 2.2e-11 72.8 54 55.6
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 2.2e-11 72.8 52 59.6
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 2.8e-11 72.4 66 53.0
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 3.7e-11 72.0 54 57.4
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.7e-11 72.0 54 57.4
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 3.7e-11 72.0 54 57.4
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 6.3e-11 71.2 57 56.1
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 6.3e-11 71.2 50 58.0
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.1e-10 70.5 54 59.3
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.4e-10 70.1 51 60.8
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.4e-10 70.1 55 58.2
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.8e-10 69.7 55 56.4
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.8e-10 69.7 55 56.4
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.1e-10 68.9 54 57.4
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 4.1e-10 68.6 54 51.9
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 2.0e-09 66.2 51 54.9
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 4.5e-09 65.1 45 62.2
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.5e-09 65.1 54 53.7
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 7.7e-09 64.3 58 46.6
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.2e-08 62.8 42 59.5
GSVIVG01037115001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.2e-08 62.8 49 57.1
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 9.4e-07 57.4 37 64.9
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.6e-06 56.6 37 67.6
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 2.1e-06 56.2 44 56.8
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 2.1e-06 56.2 44 56.8
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 2.1e-06 56.2 44 56.8


User provided reference genes

Program Settings