Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 9.2e-162 573.5 299 100.0
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.6e-124 449.1 271 85.2
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 7.1e-122 441.0 256 85.9
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.3e-120 436.8 272 81.2
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.7e-120 436.4 237 90.3
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.1e-119 433.7 272 81.2
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.3e-118 430.3 250 84.8
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.3e-118 430.3 270 81.1
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 8.1e-118 427.6 266 80.8
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 3.1e-117 425.6 262 81.7
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 6.9e-117 424.5 269 78.8
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 2.6e-116 422.5 274 79.6
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.5e-116 421.8 256 80.5
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 7.6e-116 421.0 254 80.7
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 7.6e-116 421.0 258 80.6
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 9.9e-116 420.6 285 75.4
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 8.4e-115 417.5 230 86.1
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 8.4e-115 417.5 249 82.7
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 1.4e-114 416.8 272 76.8
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-114 416.8 256 79.7
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 3.2e-114 415.6 263 80.2
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.2e-114 415.2 268 78.7
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.2e-114 415.2 276 75.7
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 4.2e-114 415.2 230 87.4
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 7.1e-114 414.5 233 85.8
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 7.1e-114 414.5 256 78.9
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.6e-113 413.3 256 79.3
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 2.1e-113 412.9 274 76.6
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.7e-113 412.5 268 78.7
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.6e-113 411.8 236 83.5
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.8e-112 409.8 256 78.1
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 2.3e-112 409.5 272 75.7
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 3.0e-112 409.1 249 80.3
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 3.0e-112 409.1 270 77.8
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 3.0e-112 409.1 257 77.0
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.9e-112 408.7 238 84.5
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.9e-112 408.7 254 79.1
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 5.1e-112 408.3 268 75.0
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-111 407.1 268 76.1
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.1e-111 407.1 236 82.6
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 1.9e-111 406.4 272 73.2
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 2.5e-111 406.0 256 80.5
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 2.5e-111 406.0 262 77.1
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 2.1e-110 402.9 242 81.0
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 4.8e-110 401.7 236 82.2
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 8.1e-110 401.0 256 76.6
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 8.1e-110 401.0 275 74.2
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.1e-109 400.6 257 76.7
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 1.8e-109 399.8 246 80.5
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.4e-109 399.4 237 81.9
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 2.4e-109 399.4 237 81.0
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 5.3e-109 398.3 284 73.6
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.9e-109 397.9 233 83.7
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.5e-108 396.7 270 75.6
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 3.4e-108 395.6 234 81.2
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 3.4e-108 395.6 233 82.0
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 4.5e-108 395.2 274 72.3
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 5.8e-108 394.8 256 76.2
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 5.8e-108 394.8 263 74.5
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 7.6e-108 394.4 276 73.2
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 9.9e-108 394.0 235 80.0
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 9.9e-108 394.0 237 79.7
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.3e-107 393.7 242 77.3
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.3e-107 393.7 256 75.4
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.7e-107 393.3 229 83.8
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 3.8e-107 392.1 231 81.8
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 4.9e-107 391.7 234 82.9
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 8.4e-107 391.0 262 75.2
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.1e-106 390.6 235 82.6
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 2.4e-106 389.4 234 79.9
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.4e-106 389.4 235 81.7
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.4e-106 389.4 236 80.1
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 5.5e-106 388.3 245 77.1
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.2e-105 387.1 253 75.1
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.6e-105 386.7 229 78.6
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 2.1e-105 386.3 269 74.3
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 3.5e-105 385.6 232 79.7
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.5e-105 385.6 267 72.7
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 4.6e-105 385.2 253 74.3
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 4.6e-105 385.2 245 76.7
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 6.0e-105 384.8 233 79.0
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 6.0e-105 384.8 330 64.2
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.3e-104 383.6 233 79.0
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.0e-104 382.5 270 73.3
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 6.7e-104 381.3 263 71.9
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.1e-103 380.6 270 73.0
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 3.3e-103 379.0 233 76.8
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 3.3e-103 379.0 270 71.9
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 4.3e-103 378.6 253 72.7
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.6e-102 376.7 294 65.6
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 2.1e-102 376.3 237 76.4
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 8.2e-102 374.4 278 69.8
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.2e-100 370.5 254 74.0
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 5.8e-100 368.2 240 73.3
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.3e-99 367.1 230 74.3
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 4.9e-99 365.2 257 73.2
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.1e-98 361.3 277 64.6
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 1.5e-95 353.6 231 75.3
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 4.3e-95 352.1 259 69.1
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 5.7e-95 351.7 269 65.1
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.6e-94 350.1 244 69.7
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.8e-94 348.6 254 70.5
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 6.3e-94 348.2 256 68.8
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 6.3e-94 348.2 252 71.8
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.1e-93 347.4 254 70.5
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.4e-93 347.1 274 63.1
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.1e-93 345.5 270 69.6
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 6.9e-93 344.7 276 62.7
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.6e-92 342.8 273 67.4
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.6e-92 342.8 260 68.8
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 3.4e-92 342.4 272 63.2
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 1.3e-91 340.5 254 67.3
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.3e-91 340.5 236 69.1
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.3e-91 340.5 256 68.4
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 2.2e-91 339.7 255 67.1
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 3.8e-91 339.0 263 65.0
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 8.5e-91 337.8 272 61.8
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 2.5e-90 336.3 259 65.3
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 4.2e-90 335.5 268 64.2
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.2e-89 334.0 252 66.7
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 1.2e-89 334.0 245 67.3
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 7.9e-89 331.3 263 64.6
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.0e-88 330.9 240 73.8
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 3.0e-88 329.3 269 61.0
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 5.1e-88 328.6 270 62.2
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 5.1e-88 328.6 187 88.2
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.1e-88 328.6 267 62.2
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 8.8e-88 327.8 237 64.1
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.3e-86 323.9 259 65.6
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 9.1e-85 317.8 226 75.2
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 6.5e-83 311.6 279 57.0
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 3.2e-82 309.3 230 64.3
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 7.2e-82 308.1 187 81.3
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.1e-81 306.6 231 61.0
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 2.6e-79 299.7 274 55.1
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 2.8e-78 296.2 200 75.0
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 3.7e-78 295.8 203 74.4
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 6.3e-78 295.0 228 68.9
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.6e-76 289.7 271 54.2
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.9e-76 288.5 262 60.3
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 5.9e-68 261.9 260 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 2.2e-67 260.0 262 50.0
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.8e-67 259.2 267 49.1
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 6.5e-67 258.5 226 61.9
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 1.5e-66 257.3 145 84.8
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 4.7e-65 252.3 263 47.1
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.5e-63 247.3 213 61.5
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.4e-61 240.0 130 87.7
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 7.0e-61 238.4 130 86.9
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 2.0e-60 236.9 170 65.9
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.7e-59 233.8 170 74.1
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 1.9e-58 230.3 264 48.5
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 3.0e-56 223.0 208 62.5
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 2.6e-55 219.9 266 42.1
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 5.7e-55 218.8 206 57.8
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 9.8e-55 218.0 204 57.8
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.3e-54 217.6 160 72.5
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 2.4e-53 213.4 172 69.2
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.2e-50 202.6 140 72.9
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 3.4e-47 193.0 264 45.8
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 2.8e-46 189.9 102 87.3
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 7.8e-44 181.8 167 57.5
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-42 177.6 115 79.1
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 2.5e-42 176.8 150 61.3
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.1e-41 172.2 112 77.7
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 8.0e-41 171.8 143 63.6
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 5.8e-39 165.6 173 54.9
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.8e-23 112.5 63 76.2
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 2.2e-22 110.5 149 35.6
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-18 97.1 54 85.2
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 2.1e-12 77.4 140 37.1
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.1e-08 65.1 45 71.1
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 1.4e-08 64.7 103 38.8


User provided reference genes

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