Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.1e-66 256.5 130 100.0
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.7e-56 222.6 122 92.6
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 7.1e-26 120.9 143 50.3
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 7.3e-23 110.9 138 52.2
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.1e-22 109.4 136 50.7
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 4.0e-21 105.1 130 53.8
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 5.8e-20 101.3 132 50.8
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 4.9e-19 98.2 130 46.2
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 9.2e-18 94.0 130 49.2
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 3.5e-17 92.0 130 46.9
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 6.0e-17 91.3 143 46.9
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.0e-16 90.5 137 46.7
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 3.0e-16 89.0 144 45.1
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 3.0e-16 89.0 136 47.8
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 5.1e-16 88.2 132 48.5
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 1.1e-15 87.0 130 44.6
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.5e-15 86.7 144 45.8
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 7.3e-15 84.3 128 43.8
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 2.8e-14 82.4 140 45.0
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 4.8e-14 81.6 131 45.0
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 4.8e-14 81.6 153 39.9
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.4e-13 80.1 154 42.9
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 1.4e-13 80.1 134 41.0
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 1.4e-13 80.1 137 44.5
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 1.8e-13 79.7 147 41.5
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 3.1e-13 79.0 153 40.5
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 4.0e-13 78.6 140 42.1
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 4.0e-13 78.6 139 43.9
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 4.0e-13 78.6 130 42.3
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 6.9e-13 77.8 146 39.0
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 6.9e-13 77.8 132 42.4
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 6.9e-13 77.8 137 43.8
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 6.9e-13 77.8 149 41.6
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.2e-12 77.0 142 41.5
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.2e-12 77.0 135 40.7
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 2.0e-12 76.3 130 38.5
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.6e-12 75.9 132 43.2
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 3.4e-12 75.5 129 45.0
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 3.4e-12 75.5 129 45.0
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 3.4e-12 75.5 129 45.0
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 3.4e-12 75.5 133 45.9
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 4.4e-12 75.1 145 41.4
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 7.6e-12 74.3 125 42.4
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.3e-11 73.6 135 37.0
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 1.3e-11 73.6 149 38.3
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.7e-11 73.2 132 40.2
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.2e-11 72.8 131 43.5
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 2.9e-11 72.4 131 43.5
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 2.9e-11 72.4 130 46.9
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 3.8e-11 72.0 129 40.3
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 4.9e-11 71.6 132 40.2
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 4.9e-11 71.6 133 39.8
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 4.9e-11 71.6 133 39.8
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 4.9e-11 71.6 136 42.6
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.9e-11 71.6 130 44.6
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 6.4e-11 71.2 148 39.9
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.4e-11 71.2 122 38.5
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 6.4e-11 71.2 152 40.1
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 6.4e-11 71.2 141 44.7
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 8.4e-11 70.9 130 44.6
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 8.4e-11 70.9 130 44.6
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 8.4e-11 70.9 141 39.7
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.1e-10 70.5 132 38.6
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 1.1e-10 70.5 129 38.8
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 1.1e-10 70.5 122 40.2
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 1.4e-10 70.1 122 41.0
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 1.4e-10 70.1 129 38.8
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.9e-10 69.7 126 36.5
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.9e-10 69.7 126 36.5
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 1.9e-10 69.7 130 40.0
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 1.9e-10 69.7 161 39.8
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.4e-10 69.3 130 40.0
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.4e-10 69.3 122 37.7
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.4e-10 69.3 122 37.7
Carub.0007s2506 Capsella rubella HOM05D010379 ORTHO05D012419 3.2e-10 68.9 134 40.3
A03p49840 Brassica napus HOM05D010379 ORTHO05D012419 4.2e-10 68.6 133 38.3
BraA03t14079Z Brassica rapa HOM05D010379 ORTHO05D012419 4.2e-10 68.6 133 38.3
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 4.2e-10 68.6 153 36.6
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 5.4e-10 68.2 162 37.7
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.4e-10 68.2 152 38.8
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 5.4e-10 68.2 138 39.9
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 5.4e-10 68.2 122 37.7
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 5.4e-10 68.2 144 40.3
C07p47900 Brassica napus HOM05D010379 ORTHO05D012419 9.3e-10 67.4 133 37.6
BolC7t45312H Brassica oleracea HOM05D010379 ORTHO05D012419 9.3e-10 67.4 133 37.6
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 9.3e-10 67.4 136 38.2
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 9.3e-10 67.4 141 38.3
AT4G16447 Arabidopsis thaliana HOM05D010379 ORTHO05D012419 1.2e-09 67.0 132 39.4
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 1.2e-09 67.0 138 39.1
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 1.6e-09 66.6 137 40.1
CARHR222830 Cardamine hirsuta HOM05D010379 ORTHO05D012419 1.6e-09 66.6 134 40.3
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 1.6e-09 66.6 135 38.5
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 1.6e-09 66.6 133 39.1
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 2.7e-09 65.9 128 40.6
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 3.5e-09 65.5 139 41.0
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.5e-09 65.5 105 40.0
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 4.6e-09 65.1 130 37.7
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 6.0e-09 64.7 130 36.9
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 6.0e-09 64.7 139 35.3
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 6.0e-09 64.7 134 40.3
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 7.8e-09 64.3 128 37.5
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 7.8e-09 64.3 150 36.0
THA.LOC104815481 Tarenaya hassleriana HOM05D010379 ORTHO05D012419 7.8e-09 64.3 142 38.0
AL7G38540 Arabidopsis lyrata HOM05D010379 ORTHO05D012419 1.0e-08 63.9 132 38.6
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 1.0e-08 63.9 145 37.9
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.0e-08 63.9 152 38.8
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 1.7e-08 63.2 128 36.7
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-08 63.2 128 36.7
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-08 63.2 132 34.8
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-08 63.2 128 36.7
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-08 63.2 128 36.7
Oeu030108.1 Olea europaea HOM05D026462 ORTHO05D049473 1.7e-08 63.2 107 40.2
PGSC0003DMG400008468 Solanum tuberosum HOM05D018828 ORTHO05D004423 1.7e-08 63.2 131 36.6
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 2.3e-08 62.8 150 36.0
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 2.3e-08 62.8 131 40.5
Sp7g15000 Schrenkiella parvula HOM05D010379 ORTHO05D012419 3.9e-08 62.0 135 38.5
BcaNung00193 Brassica carinata HOM05D010379 ORTHO05D012419 5.1e-08 61.6 133 41.4
A08p12490 Brassica napus HOM05D010379 ORTHO05D012419 5.1e-08 61.6 133 36.1
BraA08t33240Z Brassica rapa HOM05D010379 ORTHO05D012419 5.1e-08 61.6 133 36.1
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 6.6e-08 61.2 160 39.4
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 6.6e-08 61.2 150 34.0
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 8.7e-08 60.8 136 38.2
Rhsim04G0038500 Rhododendron simsii HOM05D004793 ORTHO05D004423 8.7e-08 60.8 127 39.4
Solyc11g012520.1 Solanum lycopersicum HOM05D018828 ORTHO05D004423 8.7e-08 60.8 139 39.6
BcaC09g50349 Brassica carinata HOM05D010379 ORTHO05D012419 1.1e-07 60.5 133 41.4
A01p21100 Brassica napus HOM05D010379 ORTHO05D012419 1.1e-07 60.5 133 41.4
C01p26370 Brassica napus HOM05D010379 ORTHO05D012419 1.1e-07 60.5 133 39.8
BolC1t02584H Brassica oleracea HOM05D010379 ORTHO05D012419 1.1e-07 60.5 133 41.4
BraA01t02021Z Brassica rapa HOM05D010379 ORTHO05D012419 1.1e-07 60.5 133 41.4
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 1.1e-07 60.5 125 38.4
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 1.1e-07 60.5 125 38.4
CAN.G696.14 Capsicum annuum HOM05D018828 ORTHO05D004423 1.9e-07 59.7 134 36.6
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.9e-07 59.7 125 40.8
Migut.M00035 Erythranthe guttata HOM05D004793 ORTHO05D004423 2.5e-07 59.3 130 36.9
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 2.5e-07 59.3 139 35.3
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.3e-07 58.9 73 53.4
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 5.6e-07 58.2 53 56.6
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 5.6e-07 58.2 128 37.5
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 5.6e-07 58.2 136 36.0
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 7.3e-07 57.8 130 34.6
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 7.3e-07 57.8 138 34.8
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 7.3e-07 57.8 127 36.2
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 7.3e-07 57.8 134 35.8
ATR0712G036 Amborella trichopoda HOM05D004793 ORTHO05D004423 9.6e-07 57.4 132 36.4
BolC8t48370H Brassica oleracea HOM05D010379 ORTHO05D012419 9.6e-07 57.4 133 35.3
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 1.3e-06 57.0 53 54.7
SGA_v2.0_scaffold7G03722 Striga asiatica HOM05D026462 ORTHO05D004423 1.3e-06 57.0 133 33.1
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 2.1e-06 56.2 130 33.8
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 2.8e-06 55.8 130 35.4
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 3.6e-06 55.5 135 34.1
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 3.6e-06 55.5 129 35.7
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 3.6e-06 55.5 124 37.9
Thhalv10026565m.g Eutrema salsugineum HOM05D010379 ORTHO05D012419 4.8e-06 55.1 136 37.5
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 6.2e-06 54.7 130 35.4


User provided reference genes

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