Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021568 Camellia sinensis var. sinensis HOM05D007134 ORTHO05D009004 9.7e-194 679.9 320 100.0
Actinidia03384 Actinidia chinensis HOM05D007134 ORTHO05D009004 2.1e-156 555.8 324 80.2
Dinv28939 Davidia involucrata HOM05D007134 ORTHO05D009004 1.6e-151 539.7 321 80.7
Hma1.2p1_2785F.1_g328490 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 1.9e-144 516.2 303 77.9
Hma1.2p1_0991F.1_g244990 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 2.4e-144 515.8 303 77.6
Peaxi162Scf00006g04220 Petunia axillaris HOM05D007134 ORTHO05D009004 2.4e-136 489.2 297 74.1
Lj8A293T18 Lonicera japonica HOM05D007134 ORTHO05D009004 1.3e-134 483.4 294 74.5
GSVIVG01013189001 Vitis vinifera HOM05D007134 ORTHO05D009004 1.3e-134 483.4 288 78.1
Solyc08g077090.3 Solanum lycopersicum HOM05D007134 ORTHO05D009004 9.6e-133 477.2 294 72.1
Nitab4.5_0002931g0030 Nicotiana tabacum HOM05D007134 ORTHO05D009004 1.6e-132 476.5 296 71.6
Rhsim11G0013400 Rhododendron simsii HOM05D007134 ORTHO05D009004 1.6e-132 476.5 439 56.7
Manes.15G172000 Manihot esculenta HOM05D007134 ORTHO05D009004 6.2e-132 474.6 315 70.5
Potri.001G144000 Populus trichocarpa HOM05D007134 ORTHO05D009004 1.4e-131 473.4 296 73.3
Cfa012416 Carpinus fangiana HOM05D007134 ORTHO05D009004 3.1e-131 472.2 295 74.2
CiPaw.11G091800 Carya illinoinensis HOM05D007134 ORTHO05D009004 4.0e-131 471.9 318 70.1
Thecc.03G230400 Theobroma cacao HOM05D007134 ORTHO05D009004 6.9e-131 471.1 293 73.0
TAR629G3531 Trochodendron aralioides HOM05D007134 ORTHO05D009004 1.5e-130 469.9 315 69.5
Sopen08g025670 Solanum pennellii HOM05D007134 ORTHO05D009004 2.0e-130 469.5 294 71.4
Duzib205G1618 Durio zibethinus HOM05D007134 ORTHO05D009004 4.4e-130 468.4 293 74.1
Nitab4.5_0001276g0070 Nicotiana tabacum HOM05D007134 ORTHO05D009004 7.6e-130 467.6 288 72.2
CAN.G1659.3 Capsicum annuum HOM05D007134 ORTHO05D009004 1.3e-129 466.8 296 70.3
PGSC0003DMG400017530 Solanum tuberosum HOM05D007134 ORTHO05D009004 2.2e-129 466.1 324 66.4
Haze_08260 Corylus avellana HOM05D007134 ORTHO05D009004 2.9e-129 465.7 309 71.8
Gohir.D12G211900 Gossypium hirsutum HOM05D007134 ORTHO05D009004 2.9e-129 465.7 296 72.3
Gorai.008G227500 Gossypium raimondii HOM05D007134 ORTHO05D009004 2.9e-129 465.7 296 72.3
COL.COLO4_17065 Corchorus olitorius HOM05D007134 ORTHO05D009004 6.4e-129 464.5 292 71.6
Atru.chr6.1744 Acer truncatum HOM05D007134 ORTHO05D009004 1.4e-128 463.4 317 68.8
Sabra01G0112400 Salix brachista HOM05D007134 ORTHO05D009004 3.0e-126 455.7 327 65.7
Prupe.5G039700 Prunus persica HOM05D007134 ORTHO05D009004 4.3e-125 451.8 317 67.2
Glyma.05G112400 Glycine max HOM05D007134 ORTHO05D009004 1.6e-124 449.9 297 69.4
Glyma.17G154600 Glycine max HOM05D007134 ORTHO05D009004 1.1e-123 447.2 303 68.3
TWI81G0484 Tripterygium wilfordii HOM05D007134 ORTHO05D009004 1.1e-123 447.2 293 69.6
Psat4g079040 Pisum sativum HOM05D007134 ORTHO05D009004 1.4e-123 446.8 291 69.8
TPR.G28658 Trifolium pratense HOM05D007134 ORTHO05D009004 1.4e-123 446.8 293 68.9
Phvul.003G230000 Phaseolus vulgaris HOM05D007134 ORTHO05D009004 1.8e-123 446.4 297 68.4
Ca_22068_v3 Cicer arietinum L. HOM05D007134 ORTHO05D009004 4.0e-123 445.3 299 66.6
Cc08_g02480 Coffea canephora HOM05D007134 ORTHO05D009004 5.3e-123 444.9 288 70.5
ClCG10G001760 Citrullus lanatus HOM05D007134 ORTHO05D009004 2.0e-122 443.0 300 68.7
Lalb_Chr05g0220571 Lupinus albus HOM05D007134 ORTHO05D009004 2.0e-122 443.0 300 69.0
vmacro00339 Vaccinium macrocarpon HOM05D007134 ORTHO05D009004 2.0e-122 443.0 436 54.1
MSTRG.6669 Avicennia marina HOM05D007134 ORTHO05D009004 4.5e-122 441.8 291 68.7
Lj4g0007831 Lotus japonicus HOM05D007134 ORTHO05D009004 1.7e-121 439.9 305 66.9
Sc01g0007540 Simmondsia chinensis HOM05D007134 ORTHO05D009004 1.7e-121 439.9 298 67.1
Aqoxy3G02427 Aquilegia oxysepala HOM05D007134 ORTHO05D009004 4.9e-121 438.3 313 66.1
PSO782G3567 Papaver somniferum HOM05D007134 ORTHO05D009004 4.9e-121 438.3 308 65.3
Oeu036071.3 Olea europaea HOM05D007134 ORTHO05D009004 8.4e-121 437.6 326 65.3
arahy.Tifrunner.gnm1.ann1.2XNM6Q Arachis hypogaea HOM05D007134 ORTHO05D009004 1.9e-120 436.4 298 68.1
arahy.Tifrunner.gnm1.ann1.40JZG2 Arachis hypogaea HOM05D007134 ORTHO05D009004 1.9e-120 436.4 298 68.1
EL10Ac5g12144 Beta vulgaris HOM05D007134 ORTHO05D009004 2.4e-120 436.0 293 68.9
Ciclev10032247m.g Citrus clementina HOM05D007134 ORTHO05D009004 3.2e-120 435.6 286 68.5
CANSAT21G0276 Cannabis sativa HOM05D007134 ORTHO05D009004 5.4e-120 434.9 301 65.8
MELO3C013860.2 Cucumis melo HOM05D007134 ORTHO05D009004 5.4e-120 434.9 299 63.9
PGR042G2424 Punica granatum HOM05D007134 ORTHO05D009004 7.1e-120 434.5 296 67.6
MD06G1032400 Malus domestica HOM05D007134 ORTHO05D009004 9.3e-120 434.1 293 70.0
THA.LOC104814437 Tarenaya hassleriana HOM05D007134 ORTHO05D009004 3.5e-119 432.2 296 67.2
CDE12G0960 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 3.0e-118 429.1 304 68.8
CsaV3_3G001860 Cucumis sativus L. HOM05D007134 ORTHO05D009004 8.7e-118 427.6 294 65.0
AUR62007266 Chenopodium quinoa HOM05D007134 ORTHO05D009004 1.5e-117 426.8 295 65.8
RcHm_v2.0_Chr7g0209231 Rosa chinensis HOM05D007134 ORTHO05D009004 9.6e-117 424.1 294 68.4
ECA233G0754 Erigeron canadensis HOM05D007134 ORTHO05D009004 2.1e-116 422.9 293 67.2
Sed0020644 Sechium edule HOM05D007134 ORTHO05D009004 2.8e-116 422.5 298 66.1
FAN08G2031 Fragaria x ananassa HOM05D007134 ORTHO05D009004 6.2e-116 421.4 294 68.4
Ah.12g054890 Amaranthus hybridus HOM05D007134 ORTHO05D009004 5.3e-115 418.3 295 65.4
Eucgr.E00292 Eucalyptus grandis HOM05D007134 ORTHO05D009004 5.3e-115 418.3 320 62.5
FvH4_5g21740 Fragaria vesca HOM05D007134 ORTHO05D009004 5.3e-115 418.3 315 64.4
SalBow7G3039 Salvia bowleyana HOM05D007134 ORTHO05D009004 5.3e-115 418.3 298 65.1
AL4G31350 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 1.5e-114 416.8 299 63.9
SalBow7G1996 Salvia bowleyana HOM05D007134 ORTHO05D009004 7.6e-114 414.5 295 65.1
AL457U10010 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 1.3e-113 413.7 299 63.5
Lsat_1_v5_gn_6_64760 Lactuca sativa HOM05D007134 ORTHO05D009004 1.7e-113 413.3 295 64.4
SGA_v2.0_scaffold34G13941 Striga asiatica HOM05D007134 ORTHO05D009004 1.7e-113 413.3 291 63.9
AT2G35320 Arabidopsis thaliana HOM05D007134 ORTHO05D009004 2.2e-113 412.9 294 63.3
CDE04G0512 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 2.2e-113 412.9 303 67.0
FAN13G3184 Fragaria x ananassa HOM05D007134 ORTHO05D009004 4.9e-113 411.8 294 66.7
Sp4g17520 Schrenkiella parvula HOM05D007134 ORTHO05D009004 4.9e-113 411.8 296 64.5
Carub.0004s1701 Capsella rubella HOM05D007134 ORTHO05D009004 8.4e-113 411.0 291 63.6
Thhalv10016981m.g Eutrema salsugineum HOM05D007134 ORTHO05D009004 8.4e-113 411.0 297 64.0
Aa31LG9G15330 Aethionema arabicum HOM05D007134 ORTHO05D009004 1.9e-112 409.8 298 62.4
BraA03t11205Z Brassica rapa HOM05D007134 ORTHO05D009004 1.9e-112 409.8 312 59.9
Gohir.A12G209200 Gossypium hirsutum HOM05D007134 ORTHO05D009004 3.2e-112 409.1 259 73.0
A03p19520 Brassica napus HOM05D007134 ORTHO05D009004 7.1e-112 407.9 296 62.5
ATR0049G037 Amborella trichopoda HOM05D007134 ORTHO05D009004 2.1e-111 406.4 309 61.8
C03p22750 Brassica napus HOM05D007134 ORTHO05D009004 2.1e-111 406.4 296 62.5
FAN18G1678 Fragaria x ananassa HOM05D007134 ORTHO05D009004 4.6e-111 405.2 340 59.7
HanXRQChr06g0178411 Helianthus annuus HOM05D007134 ORTHO05D009004 3.0e-110 402.5 303 63.0
Migut.M00165 Erythranthe guttata HOM05D007134 ORTHO05D009004 5.1e-110 401.7 286 63.3
CARHR129460 Cardamine hirsuta HOM05D007134 ORTHO05D009004 6.7e-110 401.4 290 63.4
DCAR_032214 Daucus carota HOM05D007134 ORTHO05D009004 4.3e-109 398.7 287 63.1
BolC3t14673H Brassica oleracea HOM05D007134 ORTHO05D009004 5.6e-109 398.3 296 61.5
Hund11255 Selenicereus undatus HOM05D007134 ORTHO05D009004 2.0e-106 389.8 322 58.7
Nn6g33621 Nelumbo nucifera HOM05D007134 ORTHO05D009004 1.8e-102 376.7 297 59.3
Os06g0110100 Oryza sativa ssp. japonica HOM05D007134 ORTHO05D009004 8.7e-102 374.4 302 57.9
unitig_749.g14086 Utricularia gibba HOM05D007134 ORTHO05D009004 1.3e-100 370.5 289 60.2
Zm00001eb417090 Zea mays HOM05D007134 ORTHO05D009004 2.4e-99 366.3 286 58.4
PSO063G6706 Papaver somniferum HOM05D007134 ORTHO05D009004 3.3e-93 345.9 307 53.1
BcaC01g05731 Brassica carinata HOM05D007134 ORTHO05D009004 4.3e-93 345.5 295 55.3
AUR62018733 Chenopodium quinoa HOM05D007134 ORTHO05D009004 4.3e-93 345.5 295 55.3
FAN04G0135 Fragaria x ananassa HOM05D007134 ORTHO05D009004 9.7e-93 344.4 294 59.2
Medtr4g098510 Medicago truncatula HOM05D007134 ORTHO05D009004 8.8e-86 321.2 222 67.6
Pp3c2_15970 Physcomitrium patens HOM05D007134 ORTHO05D009004 3.8e-81 305.8 292 47.3
AagrBONN_evm.TU.Sc2ySwM_117.2263 Anthoceros agrestis HOM05D007134 ORTHO05D009004 1.7e-73 280.4 304 42.8
VMungo0251G0669 Vigna mungo HOM05D007134 ORTHO05D009004 1.1e-67 261.2 180 65.0
Pp3c1_31250 Physcomitrium patens HOM05D007134 ORTHO05D009004 9.1e-67 258.1 299 41.8
Pp3c2_10940 Physcomitrium patens HOM05D007134 ORTHO05D009004 3.1e-59 233.0 294 41.5
QL12p006104 Quercus lobata HOM05D007134 ORTHO05D009004 2.0e-58 230.3 147 70.1
Pp3c17_17110 Physcomitrium patens HOM05D007134 ORTHO05D009004 2.8e-52 209.9 258 39.9
VMungo0251G0585 Vigna mungo HOM05D007134 ORTHO05D009004 3.0e-46 189.9 115 75.7
SEGI_12545 Sequoiadendron giganteum HOM05D007134 ORTHO05D009004 2.1e-39 167.2 114 66.7
Cpa.g.sc71.65 Carica papaya HOM05D007134 ORTHO05D009004 6.0e-34 149.1 84 70.2
Nn6g33134 Nelumbo nucifera HOM05D007134 ORTHO05D009004 1.7e-09 67.8 70 52.9
Cre09.g398150 Chlamydomonas reinhardtii HOM05D007134 ORTHO05D009004 4.3e-08 63.2 136 34.6


User provided reference genes

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