Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.3e-131 473.0 234 100.0
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.7e-118 429.5 217 98.2
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 1.7e-94 349.7 217 78.8
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 6.4e-94 347.8 217 78.3
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 1.7e-86 323.2 217 72.8
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 1.2e-84 317.0 220 73.2
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 2.8e-81 305.8 217 67.7
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 1.1e-80 303.9 214 71.0
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 3.4e-79 298.9 217 68.2
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 3.8e-78 295.4 218 68.8
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 1.1e-77 293.9 217 66.8
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 3.2e-77 292.4 217 68.2
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 3.2e-77 292.4 217 65.9
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 3.2e-77 292.4 217 65.9
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 4.2e-77 292.0 217 66.8
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 2.1e-76 289.7 212 67.0
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 1.0e-75 287.3 217 64.5
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 1.3e-75 287.0 217 64.1
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 2.3e-75 286.2 212 65.6
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 3.0e-75 285.8 212 67.9
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 4.3e-74 282.0 213 64.3
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 1.3e-73 280.4 217 63.6
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 1.3e-73 280.4 217 65.4
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 2.4e-72 276.2 218 64.2
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 5.3e-72 275.0 213 63.4
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 5.3e-72 275.0 217 65.4
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 1.2e-71 273.9 217 61.3
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 1.2e-71 273.9 218 61.9
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 4.5e-71 271.9 217 62.7
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 4.5e-71 271.9 217 61.3
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 1.3e-70 270.4 217 61.8
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 2.9e-70 269.2 217 60.4
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.1e-69 267.3 217 62.2
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 2.4e-69 266.2 218 61.0
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 9.3e-69 264.2 217 60.8
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 3.5e-68 262.3 217 59.4
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 3.5e-68 262.3 217 58.5
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 4.6e-68 261.9 216 60.6
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 6.0e-68 261.5 218 61.5
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 2.3e-67 259.6 217 59.9
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 3.9e-67 258.8 217 59.4
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 5.1e-67 258.5 217 60.4
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 6.7e-67 258.1 217 59.4
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 1.5e-66 256.9 217 57.1
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 3.3e-66 255.8 217 59.0
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 1.3e-65 253.8 217 56.7
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 1.6e-65 253.4 217 58.1
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 1.6e-65 253.4 217 59.9
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 3.7e-65 252.3 218 59.2
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 3.7e-65 252.3 218 59.2
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 4.8e-65 251.9 217 57.1
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 4.8e-65 251.9 218 58.7
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 8.1e-65 251.1 217 55.8
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 1.1e-64 250.8 217 58.1
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 1.4e-64 250.4 217 55.3
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 6.9e-64 248.1 217 58.5
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 9.0e-64 247.7 212 57.1
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 9.0e-64 247.7 217 57.6
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 1.2e-63 247.3 217 57.6
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 5.8e-63 245.0 217 56.7
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 1.0e-62 244.2 217 57.1
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 1.7e-62 243.4 219 56.6
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 3.8e-62 242.3 217 57.1
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 1.4e-61 240.4 226 54.0
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 4.2e-61 238.8 218 56.4
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 4.2e-61 238.8 217 54.4
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 1.6e-60 236.9 217 53.5
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 2.1e-60 236.5 217 55.8
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 2.7e-60 236.1 217 55.3
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 2.5e-58 229.6 218 54.6
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 5.7e-58 228.4 217 52.5
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 7.4e-58 228.0 218 56.0
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 4.8e-57 225.3 216 54.6
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 1.4e-56 223.8 218 53.7
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 3.4e-55 219.2 218 55.0
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 1.3e-54 217.2 218 54.1
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 5.0e-54 215.3 218 55.5
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 5.0e-54 215.3 218 53.7
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 6.5e-54 214.9 218 53.7
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 6.5e-54 214.9 218 53.7
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 8.5e-54 214.5 218 55.0
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 8.5e-54 214.5 218 50.9
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 1.9e-53 213.4 218 54.1
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 2.5e-53 213.0 218 55.0
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 2.1e-52 209.9 218 54.6
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.0e-51 207.6 217 50.2
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 1.8e-51 206.8 225 50.7
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 4.5e-47 192.2 209 50.7
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 1.7e-46 190.3 209 49.8
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.7e-46 190.3 209 50.2
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 3.9e-35 152.5 141 57.4
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 4.8e-25 119.0 256 33.6
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 4.1e-24 115.9 240 31.2
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 1.0e-19 101.3 229 32.8
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 4.0e-19 99.4 231 30.3
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 3.4e-18 96.3 91 51.6
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.2e-15 87.8 83 59.0
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 5.2e-11 72.4 41 78.0
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 2.0e-10 70.5 57 59.6


User provided reference genes

Program Settings