Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 8.9e-64 246.9 136 100.0
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.2e-62 242.3 136 98.5
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 6.9e-40 167.5 148 65.5
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.2e-38 162.5 150 66.0
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 4.9e-38 161.4 150 65.3
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 8.4e-38 160.6 150 64.7
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 8.4e-38 160.6 150 64.7
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 1.9e-37 159.5 150 59.3
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 3.2e-37 158.7 150 64.7
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 9.3e-37 157.1 150 63.3
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 2.7e-36 155.6 150 62.0
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 3.5e-36 155.2 150 63.3
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.5e-36 155.2 150 62.0
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 4.6e-36 154.8 150 60.7
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.0e-35 153.7 150 60.7
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 2.3e-35 152.5 150 61.3
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.0e-35 152.1 150 62.7
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.0e-35 152.1 150 62.7
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.0e-35 152.1 150 62.7
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 6.7e-35 151.0 150 60.0
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.9e-34 149.4 150 60.7
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 2.5e-34 149.1 150 59.3
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 4.3e-34 148.3 152 59.9
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 4.3e-34 148.3 150 57.3
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 4.3e-34 148.3 150 60.0
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 9.6e-34 147.1 141 60.3
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 9.6e-34 147.1 150 59.3
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 1.6e-33 146.4 149 59.1
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 2.1e-33 146.0 150 58.7
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.8e-33 145.6 142 59.2
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.7e-33 145.2 142 59.2
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.8e-33 144.8 141 63.8
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 8.2e-33 144.1 141 61.0
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 8.2e-33 144.1 150 59.3
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 8.2e-33 144.1 150 58.7
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.4e-32 143.3 150 58.0
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.4e-32 143.3 150 56.7
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.8e-32 142.9 124 66.1
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 1.8e-32 142.9 150 58.7
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 2.4e-32 142.5 142 58.5
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 5.3e-32 141.4 150 56.0
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 6.9e-32 141.0 150 55.3
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.2e-31 140.2 140 57.9
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.2e-31 140.2 150 54.7
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 2.6e-31 139.0 151 56.3
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.4e-31 138.7 150 56.7
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 4.5e-31 138.3 150 56.7
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 1.0e-30 137.1 150 56.7
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 1.0e-30 137.1 150 57.3
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 1.3e-30 136.7 151 55.6
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.7e-30 136.3 150 54.7
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.7e-30 136.3 137 60.6
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 2.9e-30 135.6 151 55.0
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 4.9e-30 134.8 150 54.7
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 4.9e-30 134.8 152 55.9
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.1e-29 133.7 150 55.3
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.9e-29 132.9 155 54.2
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 5.5e-29 131.3 150 55.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 5.5e-29 131.3 150 55.3
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 7.1e-29 131.0 141 56.0
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 7.1e-29 131.0 150 52.0
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.2e-28 130.2 150 52.0
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 2.1e-28 129.4 151 54.3
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.7e-28 129.0 146 51.4
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 3.5e-28 128.6 150 53.3
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 3.0e-27 125.6 150 51.3
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 6.7e-27 124.4 121 63.6
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 6.7e-27 124.4 121 63.6
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 6.7e-27 124.4 121 63.6
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 8.7e-27 124.0 120 63.3
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 1.1e-26 123.6 150 52.7
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 1.1e-26 123.6 145 50.3
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.5e-26 123.2 150 54.7
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 1.5e-26 123.2 150 50.7
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.3e-26 122.1 152 53.9
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 4.3e-26 121.7 150 50.7
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 4.3e-26 121.7 132 56.8
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 9.7e-26 120.6 129 58.9
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.3e-25 120.2 150 50.0
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 2.8e-25 119.0 151 49.7
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 3.7e-25 118.6 146 51.4
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 3.7e-25 118.6 121 59.5
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 4.8e-25 118.2 112 63.4
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 6.3e-25 117.9 150 49.3
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.4e-24 116.7 138 50.0
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 4.1e-24 115.2 116 60.3
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 4.1e-24 115.2 150 50.7
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 4.1e-24 115.2 150 48.7
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 4.1e-24 115.2 150 50.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 5.3e-24 114.8 150 49.3
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.3e-24 114.8 151 52.3
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 5.3e-24 114.8 151 52.3
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 9.0e-24 114.0 150 48.0
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.0e-24 114.0 151 51.7
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 1.2e-23 113.6 150 48.7
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.5e-23 113.2 150 48.0
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.5e-23 113.2 150 48.0
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.5e-23 113.2 150 48.0
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.5e-23 113.2 150 48.0
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.5e-23 113.2 150 48.0
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 4.5e-23 111.7 150 49.3
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 4.5e-23 111.7 119 58.0
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 2.9e-22 109.0 145 45.5
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.0e-22 108.2 146 50.0
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.4e-21 106.7 119 55.5
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.2e-21 105.5 114 54.4
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 5.5e-21 104.8 151 47.0
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.6e-20 102.1 118 52.5
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 6.1e-20 101.3 147 49.0
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 6.1e-20 101.3 150 50.0
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 7.4e-18 94.4 151 47.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.1e-16 90.5 125 44.8
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 1.3e-14 83.6 112 46.4
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.3e-14 83.6 72 65.3
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 6.5e-14 81.3 152 42.1
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.5e-13 79.3 121 44.6
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 5.5e-13 78.2 111 45.0
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 4.7e-12 75.1 150 35.3
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 1.0e-11 73.9 65 66.2
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.0e-10 69.7 71 52.1
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 4.4e-10 68.6 70 54.3
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.3e-09 67.0 71 54.9
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.1e-08 63.9 92 45.7
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 2.4e-08 62.8 89 48.3
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.9e-07 58.2 86 43.0
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.0e-06 57.4 107 41.1
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 1.0e-06 57.4 122 34.4
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 5.0e-06 55.1 55 58.2


User provided reference genes

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