Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.1e-50 203.0 100 100.0
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 6.0e-41 170.6 163 60.1
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.9e-39 165.6 165 59.4
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.2e-38 162.9 165 57.6
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 1.2e-38 162.9 165 57.6
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 1.2e-38 162.9 165 57.6
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 3.6e-38 161.4 164 56.7
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 4.7e-38 161.0 143 62.9
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.1e-37 159.8 165 56.4
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.1e-37 159.8 165 56.4
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.1e-37 159.8 165 56.4
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.8e-37 159.1 165 56.4
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 1.8e-37 159.1 165 56.4
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 2.4e-37 158.7 165 55.8
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 2.4e-37 158.7 165 55.8
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 3.1e-37 158.3 165 56.4
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 3.1e-37 158.3 165 55.8
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 3.1e-37 158.3 163 56.4
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 4.0e-37 157.9 165 56.4
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 4.0e-37 157.9 165 56.4
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 5.2e-37 157.5 163 55.2
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 8.9e-37 156.8 163 55.8
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 8.9e-37 156.8 163 56.4
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.2e-36 156.4 165 55.2
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 1.5e-36 156.0 165 55.2
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 1.5e-36 156.0 165 55.2
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.5e-36 156.0 165 55.8
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 2.0e-36 155.6 165 55.2
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 2.0e-36 155.6 165 55.8
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.0e-36 155.6 165 55.8
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.0e-36 155.6 165 55.8
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 2.6e-36 155.2 165 54.5
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 2.6e-36 155.2 165 54.5
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 2.6e-36 155.2 165 55.2
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 3.4e-36 154.8 165 54.5
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 3.4e-36 154.8 163 55.2
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 3.4e-36 154.8 165 55.2
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 3.4e-36 154.8 165 55.2
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 4.4e-36 154.5 165 55.8
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 4.4e-36 154.5 165 54.5
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 4.4e-36 154.5 165 55.2
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 4.4e-36 154.5 165 54.5
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 5.8e-36 154.1 163 54.6
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 5.8e-36 154.1 163 54.6
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 5.8e-36 154.1 165 54.5
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 7.6e-36 153.7 165 53.9
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 9.9e-36 153.3 163 55.2
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 1.3e-35 152.9 165 54.5
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.3e-35 152.9 165 55.2
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 1.7e-35 152.5 163 54.0
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.7e-35 152.5 163 54.0
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 1.7e-35 152.5 164 54.3
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 1.7e-35 152.5 165 54.5
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 2.2e-35 152.1 165 54.5
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 2.2e-35 152.1 165 53.9
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 2.2e-35 152.1 165 54.5
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.2e-35 152.1 165 54.5
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 2.9e-35 151.8 163 54.0
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 2.9e-35 151.8 165 53.9
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 2.9e-35 151.8 165 53.9
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 3.8e-35 151.4 165 53.9
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 3.8e-35 151.4 165 53.9
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 3.8e-35 151.4 165 53.9
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 3.8e-35 151.4 165 53.9
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 3.8e-35 151.4 163 52.8
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 3.8e-35 151.4 165 53.9
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 3.8e-35 151.4 164 53.7
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 3.8e-35 151.4 163 54.6
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 3.8e-35 151.4 163 54.0
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 3.8e-35 151.4 165 54.5
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 4.9e-35 151.0 165 54.5
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 4.9e-35 151.0 164 53.7
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 4.9e-35 151.0 163 54.0
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 6.4e-35 150.6 168 52.4
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 8.4e-35 150.2 163 54.6
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 8.4e-35 150.2 165 53.9
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 8.4e-35 150.2 165 53.9
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 8.4e-35 150.2 165 54.5
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 8.4e-35 150.2 163 54.0
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 8.4e-35 150.2 162 54.3
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 1.1e-34 149.8 163 53.4
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 1.1e-34 149.8 165 53.3
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 1.1e-34 149.8 165 53.3
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 1.1e-34 149.8 165 53.3
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 1.1e-34 149.8 165 53.3
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 1.1e-34 149.8 165 53.3
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 1.1e-34 149.8 163 53.4
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 1.1e-34 149.8 165 53.9
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 1.1e-34 149.8 165 53.9
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 1.4e-34 149.4 165 53.3
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.4e-34 149.4 166 53.6
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 1.4e-34 149.4 162 53.7
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.4e-34 149.4 163 52.8
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.4e-34 149.4 163 52.8
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 1.4e-34 149.4 165 52.7
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 1.4e-34 149.4 165 52.7
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 1.9e-34 149.1 165 53.3
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 2.4e-34 148.7 162 53.7
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 2.4e-34 148.7 165 53.9
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 2.4e-34 148.7 165 53.9
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 2.4e-34 148.7 165 53.9
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 2.4e-34 148.7 165 53.3
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 2.4e-34 148.7 162 53.7
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 2.4e-34 148.7 166 53.0
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 3.2e-34 148.3 165 53.9
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 3.2e-34 148.3 163 53.4
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 3.2e-34 148.3 187 48.7
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 4.2e-34 147.9 165 52.7
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 4.2e-34 147.9 165 52.1
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 5.4e-34 147.5 163 54.0
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 5.4e-34 147.5 163 54.0
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 5.4e-34 147.5 165 53.3
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 5.4e-34 147.5 165 53.3
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 5.4e-34 147.5 164 53.0
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 7.1e-34 147.1 163 52.8
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 7.1e-34 147.1 163 54.6
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 7.1e-34 147.1 165 53.3
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 9.2e-34 146.7 165 52.1
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 9.2e-34 146.7 165 52.1
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 1.6e-33 146.0 165 52.7
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 1.6e-33 146.0 165 53.3
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 2.1e-33 145.6 166 52.4
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.1e-33 145.6 165 52.7
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 2.1e-33 145.6 165 51.5
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 4.6e-33 144.4 166 53.0
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 4.6e-33 144.4 165 51.5
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 4.6e-33 144.4 165 52.1
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 7.8e-33 143.7 166 51.8
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 1.3e-32 142.9 165 52.1
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 6.6e-32 140.6 166 51.2
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 1.5e-31 139.4 169 48.5
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.5e-31 139.4 153 53.6
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 1.9e-31 139.0 78 91.0
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 5.6e-31 137.5 204 45.1
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 5.6e-31 137.5 163 49.1
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 7.3e-31 137.1 169 48.5
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 9.6e-31 136.7 163 49.1
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 1.3e-30 136.3 78 89.7
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 2.1e-30 135.6 166 50.6
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 2.1e-30 135.6 166 50.6
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 3.6e-30 134.8 164 49.4
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 6.2e-30 134.0 78 88.5
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 6.2e-30 134.0 78 88.5
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 1.4e-29 132.9 171 46.2
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 1.8e-29 132.5 164 48.2
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 4.0e-29 131.3 78 85.9
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 4.0e-29 131.3 169 46.7
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 2.0e-28 129.0 78 87.2
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 2.0e-28 129.0 78 87.2
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 2.9e-27 125.2 83 81.9
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 6.4e-27 124.0 136 53.7
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 2.8e-22 108.6 56 94.6
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 8.1e-22 107.1 86 66.3
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 3.1e-21 105.1 56 91.1
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 4.0e-13 78.2 59 64.4
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 5.5e-10 67.8 42 83.3
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.8e-08 62.8 81 44.4
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 2.3e-08 62.4 34 88.2
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 3.0e-08 62.0 74 45.9
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 5.1e-08 61.2 72 45.8


User provided reference genes

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