Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.5e-142 507.7 268 100.0
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.4e-98 360.9 185 97.3
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.8e-96 354.4 178 100.0
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 9.6e-86 320.9 185 83.8
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 4.0e-84 315.5 186 83.9
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.2e-81 305.8 184 82.6
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.6e-80 303.5 179 81.6
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-80 302.8 163 93.3
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 3.5e-80 302.4 184 78.3
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 5.1e-79 298.5 185 78.9
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 4.8e-77 292.0 185 78.9
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.8e-76 290.0 184 76.6
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 9.0e-76 287.7 214 65.4
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 3.4e-75 285.8 205 70.2
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 5.8e-75 285.0 185 71.9
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.8e-74 282.3 180 77.8
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.9e-74 282.0 147 95.9
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 8.4e-74 281.2 205 69.3
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 8.4e-74 281.2 193 72.0
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 8.4e-74 281.2 167 80.8
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.1e-73 280.8 180 77.2
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.4e-73 280.4 180 76.7
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.5e-73 279.6 205 68.3
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.2e-73 279.3 185 73.0
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 5.5e-73 278.5 185 72.4
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.2e-72 277.3 185 73.5
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.2e-72 277.3 182 75.8
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.7e-72 276.2 201 68.7
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.5e-72 275.8 200 69.0
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 4.6e-72 275.4 235 60.0
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 4.6e-72 275.4 185 69.2
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 4.6e-72 275.4 202 66.8
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 4.6e-72 275.4 184 72.8
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 6.0e-72 275.0 195 68.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.8e-71 273.5 199 65.8
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.8e-71 273.5 200 68.0
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.3e-71 273.1 205 67.3
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 3.0e-71 272.7 185 68.6
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.0e-71 272.7 185 71.4
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 3.9e-71 272.3 199 67.8
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 6.7e-71 271.6 184 72.3
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 6.7e-71 271.6 203 66.5
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 6.7e-71 271.6 201 67.2
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 6.7e-71 271.6 201 67.2
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 6.7e-71 271.6 203 66.5
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 6.7e-71 271.6 222 63.1
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 6.7e-71 271.6 184 71.7
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 8.7e-71 271.2 185 68.6
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 8.7e-71 271.2 183 72.1
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 8.7e-71 271.2 183 72.1
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 8.7e-71 271.2 185 70.8
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.1e-70 270.8 185 68.6
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.1e-70 270.8 185 69.2
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.1e-70 270.8 185 71.9
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.5e-70 270.4 202 65.8
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.5e-70 270.4 185 71.4
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.9e-70 270.0 186 69.9
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 3.3e-70 269.2 201 63.2
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 3.3e-70 269.2 185 70.3
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 7.4e-70 268.1 185 70.3
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 7.4e-70 268.1 185 70.3
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 7.4e-70 268.1 185 68.1
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 9.6e-70 267.7 185 71.4
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.3e-69 267.3 181 70.2
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.3e-69 267.3 181 70.2
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.3e-69 267.3 201 66.7
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-69 267.3 201 66.7
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-69 266.9 164 85.4
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.6e-69 266.9 183 69.4
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.8e-69 266.2 201 66.2
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.8e-69 266.2 201 66.2
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 3.7e-69 265.8 203 63.1
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 4.8e-69 265.4 183 68.9
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.8e-69 265.4 183 68.9
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 6.2e-69 265.0 183 68.9
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 6.2e-69 265.0 185 66.5
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 8.2e-69 264.6 202 65.3
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 8.2e-69 264.6 201 66.2
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-68 263.8 201 66.2
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.8e-68 263.5 183 68.9
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.4e-68 263.1 183 71.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 2.4e-68 263.1 185 67.0
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 4.0e-68 262.3 199 65.3
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 5.3e-68 261.9 184 70.1
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.9e-68 261.5 200 65.5
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.2e-67 260.8 202 65.3
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.0e-67 260.0 178 71.3
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 3.4e-67 259.2 202 65.3
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 3.4e-67 259.2 185 69.2
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.4e-67 259.2 185 69.2
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 5.8e-67 258.5 207 63.8
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 7.6e-67 258.1 173 73.4
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.0e-66 257.7 176 71.0
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.0e-66 257.7 185 69.2
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.3e-66 257.3 198 65.2
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.7e-66 256.9 181 70.2
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.7e-66 256.9 178 69.7
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 2.2e-66 256.5 180 68.3
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 2.2e-66 256.5 224 59.4
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 3.8e-66 255.8 181 69.1
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 4.9e-66 255.4 185 67.6
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 8.4e-66 254.6 185 67.0
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 3.2e-65 252.7 196 62.2
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 4.2e-65 252.3 199 64.3
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 5.5e-65 251.9 196 61.2
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 9.3e-65 251.1 185 62.7
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.6e-64 250.4 162 75.3
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.1e-64 250.0 184 63.6
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 2.7e-64 249.6 198 62.1
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 2.7e-64 249.6 175 68.0
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.7e-64 249.6 178 66.3
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-63 247.7 132 92.4
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.0e-63 247.7 185 67.0
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.3e-63 247.3 181 66.3
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 2.3e-63 246.5 184 65.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 3.0e-63 246.1 212 57.5
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.1e-63 245.4 217 57.6
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 6.7e-63 245.0 182 64.8
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.9e-62 243.4 181 64.6
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 2.5e-62 243.0 204 61.8
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 3.3e-62 242.7 167 68.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 6.3e-61 238.4 197 61.4
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.3e-61 238.4 150 77.3
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.1e-60 237.7 181 62.4
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.4e-60 237.3 172 67.4
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 2.4e-60 236.5 184 64.1
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.4e-60 236.5 172 67.4
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.4e-59 232.6 170 69.4
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.0e-58 231.1 172 65.7
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.1e-57 227.6 182 62.6
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 3.2e-57 226.1 178 61.8
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.2e-57 224.9 147 82.3
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.1e-56 221.9 211 55.0
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 7.9e-56 221.5 209 55.5
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.0e-55 221.1 180 60.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.0e-55 219.5 200 55.5
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 3.9e-55 219.2 191 56.5
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.1e-54 217.6 159 64.8
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 8.2e-53 211.5 221 50.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.2e-51 207.6 166 65.7
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 4.2e-49 199.1 162 64.2
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.6e-48 197.2 169 58.6
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.9e-41 173.7 112 73.2
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 2.0e-35 153.7 106 67.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.7e-34 150.6 171 43.9
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.2e-33 145.2 76 89.5
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 2.0e-30 137.1 150 50.0
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.8e-29 133.3 172 39.0
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.1e-28 131.3 171 39.2
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.0e-26 124.8 169 40.2
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 6.5e-26 122.1 160 40.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 5.0e-18 95.9 86 54.7
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.3e-17 93.2 50 84.0
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.1e-16 90.5 150 34.7
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 8.0e-16 88.6 100 44.0
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 2.0e-06 57.4 53 49.1
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.0e-06 57.4 53 49.1
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 3.4e-06 56.6 84 41.7


User provided reference genes

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