Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.8e-188 661.4 336 100.0
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.6e-151 539.7 344 82.8
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 7.7e-141 504.2 340 78.5
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 3.9e-137 491.9 349 73.1
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 1.8e-134 483.0 347 74.4
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 2.6e-133 479.2 338 71.6
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 1.0e-132 477.2 338 71.6
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.0e-132 477.2 338 71.6
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.3e-132 476.9 338 74.0
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 2.9e-132 475.7 338 71.6
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 3.8e-132 475.3 338 71.6
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 8.5e-132 474.2 338 71.3
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.2e-131 472.2 344 73.0
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.2e-130 470.3 338 72.8
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 3.6e-130 468.8 338 70.1
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 8.0e-130 467.6 339 71.1
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 3.0e-129 465.7 339 71.4
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.9e-129 465.3 338 72.2
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.5e-128 463.4 337 70.9
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 3.7e-127 458.8 338 69.2
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 6.3e-127 458.0 340 68.5
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.1e-126 457.2 336 68.5
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 2.4e-126 456.1 338 69.2
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.2e-125 453.8 338 70.4
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 2.6e-125 452.6 387 63.0
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 2.6e-125 452.6 349 69.6
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 3.5e-125 452.2 341 68.3
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.0e-124 450.7 338 67.5
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 2.9e-124 449.1 338 67.2
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 5.0e-124 448.4 386 63.0
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 2.5e-123 446.0 338 68.0
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 7.2e-123 444.5 337 69.1
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 7.2e-123 444.5 339 67.8
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 6.1e-122 441.4 341 69.8
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 8.0e-122 441.0 338 68.3
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 4.0e-121 438.7 338 68.0
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 8.8e-121 437.6 336 65.2
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 8.8e-121 437.6 390 60.3
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 2.6e-120 436.0 338 67.8
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 4.4e-120 435.3 333 65.8
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 9.7e-120 434.1 338 66.6
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 1.3e-119 433.7 337 66.5
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.3e-119 433.7 344 66.9
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 2.8e-119 432.6 375 62.1
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 2.8e-119 432.6 338 66.0
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 6.3e-119 431.4 338 67.2
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 8.3e-119 431.0 364 62.9
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 5.3e-118 428.3 338 66.0
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 1.2e-117 427.2 336 65.5
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 2.0e-117 426.4 358 65.6
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 4.5e-117 425.2 341 65.1
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 7.7e-117 424.5 390 60.5
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 5.0e-116 421.8 338 66.3
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.5e-116 421.0 389 58.6
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 8.5e-116 421.0 386 60.1
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.1e-115 420.6 384 60.2
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 1.9e-115 419.9 338 64.2
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.9e-115 419.9 345 63.8
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 3.2e-115 419.1 382 59.9
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 5.5e-115 418.3 429 56.6
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 5.5e-115 418.3 338 63.9
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 7.2e-115 417.9 341 66.3
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 2.1e-114 416.4 340 65.3
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 2.1e-114 416.4 338 61.2
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 3.6e-114 415.6 343 62.4
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 8.0e-114 414.5 334 66.5
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 1.8e-113 413.3 340 64.1
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.8e-113 413.3 339 64.6
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 5.2e-113 411.8 314 70.4
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.0e-112 409.8 338 64.8
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 3.7e-111 405.6 418 53.3
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 6.3e-111 404.8 418 54.8
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.8e-110 403.3 418 53.1
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.4e-110 401.7 365 60.0
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.0e-109 399.8 352 62.2
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.7e-108 396.7 344 61.9
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 6.1e-106 388.3 350 57.7
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 2.3e-105 386.3 353 59.2
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 3.0e-105 386.0 393 56.2
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 8.9e-105 384.4 341 60.4
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 2.0e-104 383.3 289 67.5
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 5.7e-104 381.7 277 67.1
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 3.1e-102 375.9 333 59.2
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 1.2e-101 374.0 297 67.0
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 3.5e-101 372.5 339 57.8
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 1.0e-100 370.9 483 45.3
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.7e-100 370.2 291 65.3
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 6.6e-100 368.2 365 57.8
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 1.9e-99 366.7 335 57.0
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.6e-98 363.6 339 56.6
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 1.6e-98 363.6 332 59.0
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 2.3e-97 359.8 337 56.7
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 5.2e-97 358.6 379 55.9
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 5.8e-96 355.1 320 62.2
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.9e-94 350.1 336 54.8
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 4.1e-94 349.0 214 76.6
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 7.0e-94 348.2 207 78.3
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.2e-93 347.4 361 53.5
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 1.2e-93 347.4 336 53.9
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.8e-89 333.6 387 50.4
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.1e-89 332.8 349 53.6
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.4e-86 323.9 336 50.0
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.6e-85 320.5 259 60.2
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.5e-83 313.9 251 67.3
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 5.6e-83 312.0 337 49.6
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 5.6e-83 312.0 337 49.6
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 3.6e-82 309.3 337 49.3
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 8.9e-81 304.7 340 48.5
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.5e-80 303.9 168 88.1
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 4.4e-80 302.4 336 48.8
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 5.8e-80 302.0 336 49.1
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.2e-79 300.1 412 45.4
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 8.3e-79 298.1 336 48.5
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 2.4e-78 296.6 341 47.8
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.2e-77 294.3 339 47.2
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 2.7e-77 293.1 343 47.2
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 6.4e-71 271.9 174 77.0
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 1.4e-70 270.8 254 57.9
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 3.9e-68 262.7 159 76.7
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 1.1e-65 254.6 262 48.9
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 9.9e-64 248.1 200 68.0
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.6e-61 239.2 153 76.5
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.1e-58 230.3 306 45.1
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 7.6e-56 221.9 402 37.1
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 7.4e-51 205.3 150 70.0
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.4e-48 196.4 114 85.1
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 8.7e-36 155.2 117 64.1
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.9e-35 154.1 100 79.0
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 7.4e-35 152.1 246 39.8
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 1.1e-27 128.3 100 63.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.3e-27 126.3 80 75.0
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 5.7e-27 125.9 142 57.0
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 2.2e-23 114.0 133 54.9
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 7.7e-16 89.0 51 80.4
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 2.5e-14 84.0 215 31.2
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.2e-14 83.2 56 60.7
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 7.2e-14 82.4 55 78.2
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.6e-13 80.1 48 75.0
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 8.8e-12 75.5 76 51.3
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 1.8e-09 67.8 422 20.1


User provided reference genes

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