Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021499 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 2.7e-112 408.7 206 100.0
CSS0031703 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 2.0e-75 286.2 172 87.8
CSS0042031 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 2.0e-75 286.2 172 87.8
Actinidia13669 Actinidia chinensis HOM05D005032 ORTHO05D006268 9.3e-73 277.3 172 84.9
Rhsim12G0082300 Rhododendron simsii HOM05D005032 ORTHO05D006268 1.0e-71 273.9 172 83.1
vmacro01369 Vaccinium macrocarpon HOM05D005032 ORTHO05D006268 7.4e-70 267.7 172 81.4
ECA234G2686 Erigeron canadensis HOM05D005032 ORTHO05D006268 1.3e-69 266.9 172 82.0
Lsat_1_v5_gn_4_18881 Lactuca sativa HOM05D005032 ORTHO05D006268 2.8e-69 265.8 172 80.2
Dinv21116 Davidia involucrata HOM05D005032 ORTHO05D006268 3.7e-69 265.4 172 81.4
HanXRQChr16g0529611 Helianthus annuus HOM05D005032 ORTHO05D006268 3.7e-69 265.4 172 80.8
DCAR_026721 Daucus carota HOM05D005032 ORTHO05D006268 1.1e-68 263.8 172 80.2
ECA246G3837 Erigeron canadensis HOM05D005032 ORTHO05D006268 5.3e-68 261.5 172 80.8
Lsat_1_v5_gn_3_59981 Lactuca sativa HOM05D005032 ORTHO05D006268 6.9e-68 261.2 172 77.9
arahy.Tifrunner.gnm1.ann1.HPX6PX Arachis hypogaea HOM05D005032 ORTHO05D006268 9.1e-68 260.8 172 80.8
Atru.chr11.1329 Acer truncatum HOM05D005032 ORTHO05D006268 2.6e-67 259.2 172 79.1
arahy.Tifrunner.gnm1.ann1.WF5P9Q Arachis hypogaea HOM05D005032 ORTHO05D006268 2.6e-67 259.2 172 80.2
HanXRQChr17g0552231 Helianthus annuus HOM05D005032 ORTHO05D006268 3.4e-67 258.8 172 79.1
Lj6A762T40 Lonicera japonica HOM05D005032 ORTHO05D006268 3.4e-67 258.8 170 81.2
Lj6A763T35 Lonicera japonica HOM05D005032 ORTHO05D006268 3.4e-67 258.8 170 81.2
RcHm_v2.0_Chr4g0435621 Rosa chinensis HOM05D005032 ORTHO05D006268 1.3e-66 256.9 172 78.5
FvH4_4g27760 Fragaria vesca HOM05D005032 ORTHO05D006268 2.9e-66 255.8 172 77.9
FAN12G2852 Fragaria x ananassa HOM05D005032 ORTHO05D006268 2.9e-66 255.8 172 77.9
TAR374G1139 Trochodendron aralioides HOM05D005032 ORTHO05D006268 2.9e-66 255.8 172 77.9
VMungo0720G2532 Vigna mungo HOM05D005032 ORTHO05D006268 6.5e-66 254.6 172 77.3
FAN07G0299 Fragaria x ananassa HOM05D005032 ORTHO05D006268 8.5e-66 254.2 172 77.3
Glyma.10G276200 Glycine max HOM05D005032 ORTHO05D006268 8.5e-66 254.2 172 77.3
Manes.14G099000 Manihot esculenta HOM05D005032 ORTHO05D006268 8.5e-66 254.2 172 77.3
FAN22G0537 Fragaria x ananassa HOM05D005032 ORTHO05D006268 1.1e-65 253.8 172 77.3
Gohir.A13G053540 Gossypium hirsutum HOM05D005032 ORTHO05D006268 1.4e-65 253.4 172 77.9
MD13G1044800 Malus domestica HOM05D005032 ORTHO05D006268 1.4e-65 253.4 172 77.9
Medtr1g111330 Medicago truncatula HOM05D005032 ORTHO05D006268 1.4e-65 253.4 172 77.9
Phvul.007G025400 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 2.5e-65 252.7 172 77.3
Nn3g17775 Nelumbo nucifera HOM05D005032 ORTHO05D006268 3.2e-65 252.3 172 76.7
GSVIVG01011930001 Vitis vinifera HOM05D005032 ORTHO05D006268 3.2e-65 252.3 172 77.9
Glyma.20G113500 Glycine max HOM05D005032 ORTHO05D006268 4.2e-65 251.9 172 76.2
Psat6g229600 Pisum sativum HOM05D005032 ORTHO05D006268 4.2e-65 251.9 172 77.3
Gohir.D13G070800 Gossypium hirsutum HOM05D005032 ORTHO05D006268 5.5e-65 251.5 172 77.3
Gorai.013G081000 Gossypium raimondii HOM05D005032 ORTHO05D006268 5.5e-65 251.5 172 77.3
Ca_11190_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 7.2e-65 251.1 172 77.3
Lalb_Chr02g0146101 Lupinus albus HOM05D005032 ORTHO05D006268 7.2e-65 251.1 172 77.3
TPR.G26307 Trifolium pratense HOM05D005032 ORTHO05D006268 9.4e-65 250.8 172 76.7
TWI79G0027 Tripterygium wilfordii HOM05D005032 ORTHO05D006268 9.4e-65 250.8 172 76.2
PSO782G1090 Papaver somniferum HOM05D005032 ORTHO05D006268 1.2e-64 250.4 172 74.4
MD16G1046200 Malus domestica HOM05D005032 ORTHO05D006268 1.6e-64 250.0 172 77.3
Sc04g0004960 Simmondsia chinensis HOM05D005032 ORTHO05D006268 1.6e-64 250.0 172 75.6
CSS0010323 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 2.1e-64 249.6 165 80.6
CSS0024978 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 2.1e-64 249.6 165 80.6
Cfa018616 Carpinus fangiana HOM05D005032 ORTHO05D006268 2.1e-64 249.6 172 76.7
Haze_17453 Corylus avellana HOM05D005032 ORTHO05D006268 2.7e-64 249.2 170 77.6
Actinidia38384 Actinidia chinensis HOM05D005032 ORTHO05D006268 3.6e-64 248.8 209 68.9
MBI13_g09687_MAGBIO Magnolia biondii HOM05D005032 ORTHO05D006268 3.6e-64 248.8 172 75.6
Potri.008G118200 Populus trichocarpa HOM05D005032 ORTHO05D006268 3.6e-64 248.8 172 76.2
Lj5g0015640 Lotus japonicus HOM05D005032 ORTHO05D006268 4.6e-64 248.4 172 77.9
PSO063G0757 Papaver somniferum HOM05D005032 ORTHO05D006268 4.6e-64 248.4 172 73.8
Thecc.02G359100 Theobroma cacao HOM05D005032 ORTHO05D006268 6.1e-64 248.1 172 75.6
Gohir.A12G169300 Gossypium hirsutum HOM05D005032 ORTHO05D006268 7.9e-64 247.7 172 76.7
Nitab4.5_0000672g0140 Nicotiana tabacum HOM05D005032 ORTHO05D006268 7.9e-64 247.7 172 75.0
CiPaw.15G004700 Carya illinoinensis HOM05D005032 ORTHO05D006268 1.0e-63 247.3 172 77.3
Cc00_g17470 Coffea canephora HOM05D005032 ORTHO05D006268 1.0e-63 247.3 172 76.7
Nitab4.5_0003642g0010 Nicotiana tabacum HOM05D005032 ORTHO05D006268 1.4e-63 246.9 172 75.0
Gorai.008G185100 Gossypium raimondii HOM05D005032 ORTHO05D006268 1.8e-63 246.5 172 76.2
Lalb_Chr17g0341981 Lupinus albus HOM05D005032 ORTHO05D006268 2.3e-63 246.1 172 73.3
Sabra08G0089600 Salix brachista HOM05D005032 ORTHO05D006268 2.3e-63 246.1 172 75.6
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 2.3e-63 246.1 172 75.6
CAN.G656.42 Capsicum annuum HOM05D005032 ORTHO05D006268 3.0e-63 245.7 172 76.2
AUR62002904 Chenopodium quinoa HOM05D005032 ORTHO05D006268 3.0e-63 245.7 172 75.0
AUR62035263 Chenopodium quinoa HOM05D005032 ORTHO05D006268 3.0e-63 245.7 172 75.0
QL01p044542 Quercus lobata HOM05D005032 ORTHO05D006268 3.9e-63 245.4 172 75.0
Sopen05g005490 Solanum pennellii HOM05D005032 ORTHO05D006268 3.9e-63 245.4 172 75.0
Migut.E00317 Erythranthe guttata HOM05D005032 ORTHO05D006268 5.1e-63 245.0 172 74.4
Potri.010G128100 Populus trichocarpa HOM05D005032 ORTHO05D006268 5.1e-63 245.0 172 75.6
PGR102G0428 Punica granatum HOM05D005032 ORTHO05D006268 5.1e-63 245.0 172 75.6
Phvul.003G028700 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 8.8e-63 244.2 172 75.0
EL10Ac6g14461 Beta vulgaris HOM05D005032 ORTHO05D006268 1.1e-62 243.8 172 74.4
MELO3C012225.2 Cucumis melo HOM05D005032 ORTHO05D006268 1.1e-62 243.8 172 74.4
Lj2g0024967 Lotus japonicus HOM05D005032 ORTHO05D006268 1.1e-62 243.8 172 74.4
Medtr5g054780 Medicago truncatula HOM05D005032 ORTHO05D006268 1.1e-62 243.8 172 75.0
Glyma.01G084500 Glycine max HOM05D005032 ORTHO05D006268 1.5e-62 243.4 172 73.8
THA.LOC104808234 Tarenaya hassleriana HOM05D005032 ORTHO05D006268 1.5e-62 243.4 173 75.7
Oeu041892.2 Olea europaea HOM05D005032 ORTHO05D006268 2.6e-62 242.7 170 75.3
Hund25090 Selenicereus undatus HOM05D005032 ORTHO05D006268 5.7e-62 241.5 172 73.3
PGSC0003DMG402012961 Solanum tuberosum HOM05D005032 ORTHO05D006268 5.7e-62 241.5 172 74.4
TPR.G38289 Trifolium pratense HOM05D005032 ORTHO05D006268 5.7e-62 241.5 172 73.3
ClCG05G022930 Citrullus lanatus HOM05D005032 ORTHO05D006268 7.4e-62 241.1 172 73.3
Ciclev10031322m.g Citrus clementina HOM05D005032 ORTHO05D006268 7.4e-62 241.1 172 73.8
CsaV3_5G034080 Cucumis sativus L. HOM05D005032 ORTHO05D006268 7.4e-62 241.1 172 74.4
Solyc05g009670.3 Solanum lycopersicum HOM05D005032 ORTHO05D006268 7.4e-62 241.1 172 74.4
Aqoxy3G03931 Aquilegia oxysepala HOM05D005032 ORTHO05D006268 1.7e-61 240.0 176 71.6
CDE05G1095 Ceratophyllum demersum HOM05D005032 ORTHO05D006268 2.2e-61 239.6 172 73.8
Sed0015336 Sechium edule HOM05D005032 ORTHO05D006268 2.8e-61 239.2 172 73.8
CSS0044553 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 8.2e-61 237.7 172 77.9
Os02g0580100 Oryza sativa ssp. japonica HOM05D005032 ORTHO05D006268 1.4e-60 236.9 172 70.3
CiPaw.16G004100 Carya illinoinensis HOM05D005032 ORTHO05D006268 2.4e-60 236.1 172 73.8
Peaxi162Scf00380g00811 Petunia axillaris HOM05D005032 ORTHO05D006268 2.4e-60 236.1 175 73.1
SEGI_10382 Sequoiadendron giganteum HOM05D005032 ORTHO05D006268 4.1e-60 235.3 172 71.5
Eucgr.B03034 Eucalyptus grandis HOM05D005032 ORTHO05D006268 5.3e-60 235.0 172 73.3
SalBow8G5398 Salvia bowleyana HOM05D005032 ORTHO05D006268 5.3e-60 235.0 172 72.7
CANSAT64G1793 Cannabis sativa HOM05D005032 ORTHO05D006268 9.1e-60 234.2 173 73.4
Gohir.D12G172600 Gossypium hirsutum HOM05D005032 ORTHO05D006268 1.2e-59 233.8 165 76.4
Psat2g101480 Pisum sativum HOM05D005032 ORTHO05D006268 1.2e-59 233.8 172 72.1
Sabra10G0097300 Salix brachista HOM05D005032 ORTHO05D006268 2.6e-59 232.6 172 71.5
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 7.7e-59 231.1 172 68.6
MSTRG.2252 Avicennia marina HOM05D005032 ORTHO05D006268 7.7e-59 231.1 172 71.5
ATR0097G002 Amborella trichopoda HOM05D005032 ORTHO05D006268 1.0e-58 230.7 172 69.8
Zm00001eb245170 Zea mays HOM05D005032 ORTHO05D006268 1.7e-58 229.9 172 69.2
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 2.9e-58 229.2 172 68.0
Ca_19113_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 6.5e-58 228.0 172 70.9
Aa31LG7G9000 Aethionema arabicum HOM05D005032 ORTHO05D006268 5.5e-57 224.9 174 70.1
AT1G25500 Arabidopsis thaliana HOM05D005032 ORTHO05D006268 5.5e-57 224.9 173 70.5
Ah.03g137830 Amaranthus hybridus HOM05D005032 ORTHO05D006268 2.1e-56 223.0 172 69.8
Thhalv10007483m.g Eutrema salsugineum HOM05D005032 ORTHO05D006268 2.1e-56 223.0 173 70.5
AL1G39800 Arabidopsis lyrata HOM05D005032 ORTHO05D006268 2.7e-56 222.6 178 68.5
CARHR025960 Cardamine hirsuta HOM05D005032 ORTHO05D006268 4.7e-56 221.9 173 69.9
Sp1g22710 Schrenkiella parvula HOM05D005032 ORTHO05D006268 6.1e-56 221.5 173 69.4
Carub.0001s2498 Capsella rubella HOM05D005032 ORTHO05D006268 3.0e-55 219.2 173 68.8
A08p27010 Brassica napus HOM05D005032 ORTHO05D006268 1.5e-54 216.9 173 68.2
C03p72880 Brassica napus HOM05D005032 ORTHO05D006268 1.5e-54 216.9 173 68.2
BolC3t19586H Brassica oleracea HOM05D005032 ORTHO05D006268 1.5e-54 216.9 173 68.2
BraA08t34647Z Brassica rapa HOM05D005032 ORTHO05D006268 1.5e-54 216.9 173 68.2
CSS0047250 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.3e-50 203.8 142 79.6
unitig_699.g19492 Utricularia gibba HOM05D005032 ORTHO05D006268 5.5e-49 198.4 172 62.2
Oeu004599.1 Olea europaea HOM05D005032 ORTHO05D006268 1.8e-47 193.4 182 61.0
Prupe.1G307200 Prunus persica HOM05D005032 ORTHO05D006268 1.8e-47 193.4 210 57.6
Mapoly0004s0207 Marchantia polymorpha HOM05D005032 ORTHO05D006268 4.0e-47 192.2 172 57.0
SMO165G0124 Selaginella moellendorffii HOM05D005032 ORTHO05D006268 4.0e-47 192.2 172 58.7
Duzib248G0180 Durio zibethinus HOM05D005032 ORTHO05D006268 2.7e-43 179.5 140 70.0
HPP92_006145 Vanilla planifolia HOM05D005032 ORTHO05D006268 1.8e-39 166.8 140 64.3
BcaB03g12017 Brassica carinata HOM05D005032 ORTHO05D006268 8.0e-32 141.4 102 73.5
BcaC01g01701 Brassica carinata HOM05D005032 ORTHO05D006268 1.0e-31 141.0 102 73.5
BcaB03g14048 Brassica carinata HOM05D005032 ORTHO05D006268 7.8e-27 124.8 102 67.6
COL.COLO4_07886 Corchorus olitorius HOM05D005032 ORTHO05D006268 2.2e-21 106.7 127 53.5
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 4.1e-20 102.4 101 50.5
BcaC01g01716 Brassica carinata HOM05D005032 ORTHO05D006268 5.6e-17 92.0 64 70.3
Mapoly0029s0041 Marchantia polymorpha HOM05D002512 ORTHO05D002660 2.9e-13 79.7 167 30.5
CBR_g546 Chara braunii HOM05D005032 ORTHO05D006268 6.0e-11 72.0 168 33.3
Pp3c19_5950 Physcomitrium patens HOM05D002512 ORTHO05D002660 7.8e-11 71.6 169 31.4
Pp3c18_21450 Physcomitrium patens HOM05D002512 ORTHO05D002660 2.3e-10 70.1 166 29.5
Pp3c21_1180 Physcomitrium patens HOM05D002512 ORTHO05D002660 1.6e-08 63.9 168 28.6
Actinidia04614 Actinidia chinensis HOM05D005032 ORTHO05D006268 3.1e-07 59.7 87 50.6
Actinidia04625 Actinidia chinensis HOM05D005032 ORTHO05D006268 3.1e-07 59.7 87 50.6
AagrBONN_evm.TU.Sc2ySwM_369.492 Anthoceros agrestis HOM05D002512 ORTHO05D002660 1.5e-06 57.4 137 32.1
Lalb_Chr04g0254811 Lupinus albus HOM05D005032 ORTHO05D237543 9.9e-06 54.7 121 38.8


User provided reference genes

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