Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 2.7e-83 312.0 164 100.0
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 2.2e-69 265.8 164 83.5
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 1.6e-67 259.6 165 83.0
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 1.8e-66 256.1 163 83.4
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 1.2e-65 253.4 164 79.3
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 4.4e-65 251.5 164 81.7
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 9.7e-65 250.4 164 78.7
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 1.7e-64 249.6 164 79.3
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 6.3e-64 247.7 162 80.2
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 1.2e-62 243.4 164 78.0
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.2e-62 243.4 164 76.8
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 1.2e-62 243.4 164 79.3
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 1.6e-62 243.0 164 76.2
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 3.5e-62 241.9 166 77.7
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 3.5e-62 241.9 164 75.0
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 5.9e-62 241.1 166 78.9
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 1.7e-61 239.6 164 75.0
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 1.7e-61 239.6 166 78.3
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.9e-61 238.8 164 76.8
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 2.9e-61 238.8 164 76.8
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 3.8e-61 238.4 164 78.0
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 8.5e-61 237.3 165 75.8
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 1.1e-60 236.9 163 77.9
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 1.1e-60 236.9 164 76.2
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 3.2e-60 235.3 164 78.7
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 9.4e-60 233.8 164 75.6
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 2.1e-59 232.6 163 74.8
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 3.6e-59 231.9 167 76.0
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 3.6e-59 231.9 166 75.3
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 8.0e-59 230.7 165 75.2
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 8.0e-59 230.7 164 75.0
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 8.0e-59 230.7 161 75.8
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 1.4e-58 229.9 164 75.0
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 1.8e-58 229.6 163 74.2
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.8e-58 229.6 165 73.3
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.8e-58 229.6 165 73.3
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 2.3e-58 229.2 164 73.8
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 5.2e-58 228.0 164 73.8
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 6.8e-58 227.6 164 74.4
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 8.8e-58 227.3 164 70.7
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 1.2e-57 226.9 164 72.0
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.2e-57 226.9 164 74.4
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 1.5e-57 226.5 164 72.6
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 2.6e-57 225.7 165 73.3
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 2.6e-57 225.7 164 75.6
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 3.4e-57 225.3 164 72.6
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 4.4e-57 224.9 164 73.8
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 5.7e-57 224.6 168 70.2
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 5.7e-57 224.6 165 73.9
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 9.8e-57 223.8 164 70.1
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 9.8e-57 223.8 164 72.0
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 1.3e-56 223.4 167 73.7
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.3e-56 223.4 165 73.3
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.3e-56 223.4 165 73.3
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 1.7e-56 223.0 161 72.0
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 2.8e-56 222.2 164 70.7
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 2.8e-56 222.2 162 71.6
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 4.8e-56 221.5 164 73.8
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 6.3e-56 221.1 164 72.0
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 1.1e-55 220.3 164 72.0
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 1.4e-55 219.9 164 73.2
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 1.8e-55 219.5 167 69.5
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 3.1e-55 218.8 159 71.7
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 3.1e-55 218.8 159 71.7
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 1.2e-54 216.9 164 68.9
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 2.0e-54 216.1 161 68.3
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 2.7e-54 215.7 164 68.9
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 3.5e-54 215.3 159 73.0
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 3.5e-54 215.3 164 68.9
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 4.5e-54 214.9 161 71.4
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 5.9e-54 214.5 159 71.1
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 7.7e-54 214.2 161 69.6
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 1.3e-53 213.4 163 69.3
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 2.3e-53 212.6 159 71.7
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 2.3e-53 212.6 159 71.7
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 2.3e-53 212.6 166 70.5
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 2.9e-53 212.2 157 71.3
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 3.8e-53 211.8 167 68.3
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 3.8e-53 211.8 169 69.8
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 5.0e-53 211.5 159 71.7
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 5.0e-53 211.5 161 71.4
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 1.1e-52 210.3 162 70.4
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 1.1e-52 210.3 164 67.7
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 1.5e-52 209.9 148 70.9
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 1.5e-52 209.9 163 71.8
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 1.9e-52 209.5 164 67.7
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 1.9e-52 209.5 164 67.7
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 2.5e-52 209.1 164 65.2
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 4.2e-52 208.4 164 65.2
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 7.2e-52 207.6 159 69.2
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 1.2e-51 206.8 162 67.3
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 3.6e-51 205.3 163 69.9
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 3.6e-51 205.3 161 66.5
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 1.0e-50 203.8 164 65.9
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 2.3e-50 202.6 161 64.6
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 4.0e-50 201.8 162 69.8
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 8.9e-50 200.7 162 65.4
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 1.5e-49 199.9 161 64.6
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 3.4e-49 198.7 148 72.3
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 3.4e-49 198.7 162 67.3
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 3.4e-49 198.7 162 67.9
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 5.7e-49 198.0 124 77.4
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 7.5e-49 197.6 152 67.1
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 1.7e-48 196.4 161 62.7
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 7.0e-47 191.0 119 76.5
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 1.0e-45 187.2 151 67.5
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 8.6e-45 184.1 138 62.3
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 2.5e-44 182.6 148 66.9
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 1.8e-42 176.4 151 64.9
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.0e-37 160.6 91 83.5
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 3.1e-34 149.1 160 50.6
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 1.6e-30 136.7 163 46.0
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 8.6e-29 131.0 82 76.8
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 7.3e-28 127.9 77 71.4
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 8.9e-26 120.9 107 65.4
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 2.6e-25 119.4 131 47.3
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 2.9e-24 115.9 90 65.6
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 1.9e-23 113.2 90 64.4
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 2.1e-22 109.8 167 50.9
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 2.2e-16 89.7 90 56.7
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 6.0e-14 81.6 48 77.1
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 1.3e-13 80.5 48 79.2
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 1.6e-11 73.6 146 30.8
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 8.4e-08 61.2 144 30.6


User provided reference genes

Program Settings