Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 1.4e-235 819.3 429 100.0
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 3.4e-77 293.1 444 46.4
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 9.3e-75 285.0 476 43.7
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 1.2e-45 188.3 471 35.9
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 2.7e-37 160.6 179 54.2
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.2e-32 145.2 188 46.8
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 1.5e-24 118.2 179 43.0
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 2.6e-24 117.5 357 33.1
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 8.3e-23 112.5 177 39.5
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 4.1e-22 110.2 210 37.6
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 7.0e-22 109.4 235 34.9
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 7.0e-22 109.4 448 29.0
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 4.6e-21 106.7 238 34.5
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 4.6e-21 106.7 234 32.5
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 3.9e-20 103.6 431 29.9
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 8.6e-20 102.4 196 34.7
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 1.5e-19 101.7 472 27.8
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 3.3e-19 100.5 178 41.0
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 2.8e-18 97.4 460 27.8
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 3.6e-18 97.1 197 38.1
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.7e-18 96.7 142 43.0
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 3.1e-17 94.0 192 35.9
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 6.8e-17 92.8 485 28.7
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 3.4e-16 90.5 436 27.5
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 7.5e-16 89.4 174 39.7
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 1.7e-15 88.2 419 26.7
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 2.2e-15 87.8 171 40.4
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 2.9e-15 87.4 184 34.2
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 6.4e-15 86.3 150 40.0
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 1.1e-14 85.5 471 25.5
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 2.4e-14 84.3 312 28.2
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 2.4e-14 84.3 453 26.5
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 3.2e-14 84.0 446 26.7
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 4.1e-14 83.6 147 36.7
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 5.4e-14 83.2 177 33.9
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 7.0e-14 82.8 185 33.0
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 9.2e-14 82.4 164 40.2
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.2e-13 82.0 182 34.1
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.6e-13 81.6 312 27.9
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 2.0e-13 81.3 234 32.1
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 2.7e-13 80.9 312 27.6
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.7e-13 80.9 462 26.2
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 4.6e-13 80.1 150 38.7
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 6.0e-13 79.7 162 38.3
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 6.0e-13 79.7 341 27.6
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 1.0e-12 79.0 182 33.0
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 1.3e-12 78.6 434 25.1
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.3e-12 78.6 302 27.5
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 5.0e-12 76.6 185 36.2
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 6.6e-12 76.3 286 28.0
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 1.1e-11 75.5 337 28.8
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.5e-11 75.1 435 27.1
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 5.6e-11 73.2 181 32.0
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 7.3e-11 72.8 168 35.7
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 7.3e-11 72.8 125 37.6
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 7.3e-11 72.8 143 35.0
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 3.6e-10 70.5 105 43.8
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 6.2e-10 69.7 72 47.2
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 3.1e-09 67.4 78 46.2
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 3.1e-09 67.4 482 23.7
MSTRG.21993 Avicennia marina HOM05D004311 ORTHO05D005145 4.0e-09 67.0 187 34.2
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 6.8e-09 66.2 93 37.6
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 2.6e-08 64.3 152 28.3
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 3.4e-08 63.9 50 50.0
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 4.4e-08 63.5 161 35.4
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.3e-07 62.0 123 38.2
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 2.2e-07 61.2 135 31.9
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 2.2e-07 61.2 168 30.4
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 2.9e-07 60.8 162 34.6
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 8.3e-07 59.3 87 41.4
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 1.1e-06 58.9 104 36.5
Lalb_Chr02g0144301 Lupinus albus HOM05D004311 ORTHO05D005145 1.9e-06 58.2 132 36.4
PSO339G2231 Papaver somniferum HOM05D015611 ORTHO05D026019 1.9e-06 58.2 67 41.8
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 2.4e-06 57.8 61 44.3
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 3.2e-06 57.4 238 25.6
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 5.4e-06 56.6 101 37.6
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 5.4e-06 56.6 140 31.4
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 7.1e-06 56.2 338 24.0


User provided reference genes

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