Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 0.0e+00 1446.8 807 100.0
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 4.7e-245 851.7 835 62.0
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.3e-236 822.8 814 60.6
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.8e-210 735.7 826 56.1
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 3.0e-199 699.5 694 61.4
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.5e-195 687.2 835 53.8
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 1.4e-193 680.6 671 61.5
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 1.3e-183 647.5 827 52.4
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 4.8e-173 612.5 837 51.0
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 1.1e-166 591.3 841 49.1
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.2e-162 577.0 813 49.4
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 3.5e-155 553.1 812 48.2
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 1.3e-154 551.2 831 48.9
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.2e-149 533.9 825 48.2
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-149 533.9 830 49.4
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 8.2e-149 531.9 840 45.6
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 5.3e-148 529.3 846 45.4
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.0e-147 527.3 830 47.0
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.3e-146 524.6 832 46.6
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.1e-145 521.5 826 46.1
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.5e-145 521.2 834 46.4
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-145 520.8 832 46.6
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 2.7e-144 516.9 837 45.3
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.3e-143 513.8 829 45.6
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 8.8e-143 511.9 832 46.2
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.4e-142 510.0 471 64.8
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.3e-141 508.1 843 46.3
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.4e-140 504.6 832 45.9
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 1.1e-137 495.0 828 44.8
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 1.1e-137 495.0 841 45.7
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.2e-137 493.0 822 47.2
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 3.6e-136 490.0 820 43.5
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 2.3e-135 487.3 839 45.2
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.2e-134 485.0 837 44.9
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 4.4e-134 483.0 907 40.7
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 7.5e-134 482.3 819 44.1
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.4e-132 477.2 836 43.5
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 7.0e-132 475.7 827 43.4
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 9.2e-132 475.3 816 45.0
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.6e-131 474.6 833 43.0
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 7.8e-131 472.2 835 47.9
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 1.3e-130 471.5 831 43.9
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.1e-129 468.4 835 41.3
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 3.3e-129 466.8 845 45.4
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 7.3e-129 465.7 830 45.7
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 4.7e-128 463.0 825 44.8
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 4.7e-128 463.0 810 42.6
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 6.8e-127 459.1 831 42.6
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.2e-126 458.4 838 46.1
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.0e-126 457.6 825 45.1
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 4.4e-126 456.4 856 41.8
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 2.2e-125 454.1 824 41.9
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 2.9e-125 453.8 832 45.1
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 5.4e-124 449.5 838 42.1
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 6.0e-123 446.0 1006 39.6
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.7e-122 444.5 761 42.7
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 8.6e-122 442.2 829 43.3
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 1.5e-121 441.4 823 42.3
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.5e-121 441.4 834 44.5
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 2.5e-121 440.7 852 41.5
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.0e-120 435.6 830 43.7
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 8.0e-120 435.6 827 41.5
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.1e-119 435.3 842 40.0
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 5.2e-119 433.0 819 41.8
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 5.2e-119 433.0 856 42.2
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 7.5e-118 429.1 828 41.8
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 1.1e-116 425.2 779 42.5
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.1e-115 421.0 839 41.0
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.8e-115 419.1 831 41.6
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.0e-114 418.7 814 41.5
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.7e-114 417.9 812 41.3
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 5.6e-113 412.9 829 43.5
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 1.1e-111 408.7 835 41.1
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 1.2e-110 405.2 837 41.2
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 2.0e-110 404.4 827 42.2
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 2.0e-110 404.4 839 39.3
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 2.9e-109 400.6 857 38.4
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 5.4e-108 396.4 723 43.4
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 6.0e-107 392.9 837 39.5
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.9e-105 387.9 820 39.3
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 3.3e-105 387.1 795 40.8
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 3.3e-105 387.1 840 38.5
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 2.4e-103 380.9 861 37.6
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 4.0e-103 380.2 839 39.3
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 8.9e-103 379.0 826 39.2
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.2e-102 378.6 436 55.0
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 2.0e-102 377.9 826 38.6
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 8.4e-101 372.5 830 38.3
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 1.4e-100 371.7 817 39.4
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 4.2e-100 370.2 831 40.0
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.6e-99 368.2 882 39.3
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 6.0e-99 366.3 843 37.7
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.0e-98 365.5 835 38.1
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 3.3e-97 360.5 785 40.3
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 9.3e-92 342.4 434 50.9
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.5e-89 335.1 835 36.6
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 9.6e-89 332.4 836 40.4
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 4.8e-88 330.1 619 42.6
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 8.1e-88 329.3 813 35.8
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 5.3e-87 326.6 872 34.4
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 2.6e-86 324.3 811 35.9
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 1.9e-84 318.2 644 40.7
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 1.9e-84 318.2 650 39.8
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 2.7e-83 314.3 643 38.9
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 4.6e-83 313.5 814 35.3
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 2.3e-82 311.2 563 41.6
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 6.7e-82 309.7 568 41.5
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 1.5e-81 308.5 814 35.6
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.3e-80 305.4 289 63.7
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 2.8e-80 304.3 786 36.6
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 2.8e-80 304.3 812 34.4
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 9.9e-78 295.8 815 34.6
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 1.3e-74 285.4 583 39.6
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.3e-74 285.4 813 34.1
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 3.0e-74 284.3 664 37.5
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 1.1e-73 282.3 583 39.6
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 2.5e-73 281.2 646 38.1
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 7.4e-73 279.6 647 37.6
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 7.4e-73 279.6 521 41.8
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 2.8e-72 277.7 632 37.5
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 4.8e-72 276.9 550 39.3
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 2.4e-71 274.6 827 34.0
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 3.1e-71 274.2 574 38.5
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.5e-70 271.9 835 33.7
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.9e-69 267.7 824 33.1
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 6.5e-69 266.5 589 38.4
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 2.5e-68 264.6 811 32.9
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 4.6e-67 260.4 816 33.1
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 6.0e-67 260.0 859 31.3
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 5.7e-65 253.4 840 33.0
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 7.4e-65 253.1 626 37.9
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 2.8e-64 251.1 547 39.7
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 3.7e-64 250.8 814 33.2
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 2.5e-60 238.0 679 34.2
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 4.6e-59 233.8 487 39.0
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.8e-56 224.6 513 36.6
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.4e-50 205.7 592 35.3
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 9.7e-49 199.5 172 66.3
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 2.0e-41 175.3 541 38.8
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.2e-37 161.8 422 33.4
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 2.2e-37 161.8 393 44.3
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 2.9e-37 161.4 113 74.3
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 8.5e-37 159.8 419 34.8
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 6.1e-35 153.7 406 35.0
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 8.0e-35 153.3 346 35.8
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.4e-33 147.5 193 53.9
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 3.7e-32 144.4 403 36.7
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 1.4e-31 142.5 374 41.7
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.0e-30 138.7 92 80.4
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 3.2e-28 131.3 479 30.9
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.6e-27 129.0 134 59.0
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.4e-23 115.2 277 35.7
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.5e-20 105.1 400 29.2
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.0e-18 99.8 100 57.0
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 3.4e-17 94.7 55 80.0
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.2e-16 92.0 55 87.3
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 6.3e-16 90.5 75 66.7
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.2e-14 86.3 63 76.2
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-14 85.9 63 74.6
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 2.0e-14 85.5 62 71.0
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.9e-14 84.0 54 83.3
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.9e-14 84.0 54 81.5
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.8e-14 83.6 53 83.0
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-13 82.8 53 81.1
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-13 82.0 63 71.4
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.7e-11 74.3 46 84.8
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.0e-11 73.6 46 82.6
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 6.8e-10 70.5 76 51.3
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.4e-09 68.2 44 79.5
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 5.8e-09 67.4 57 63.2
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.7e-08 64.7 53 71.7
Gohir.D12G066350 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.2e-07 60.1 59 61.0
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 2.0e-06 58.9 47 68.1
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.5e-06 58.2 138 32.6
Gohir.D04G051401 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.5e-06 58.2 59 57.6
Gorai.004G113400 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.6e-06 57.8 59 57.6


User provided reference genes

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