Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.4e-99 366.3 187 100.0
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 7.6e-98 360.5 187 98.4
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 7.6e-98 360.5 187 98.4
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 5.1e-78 294.7 182 83.5
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 7.4e-77 290.8 182 82.4
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 8.2e-76 287.3 187 78.6
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 3.4e-74 282.0 187 75.9
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 5.9e-74 281.2 187 74.3
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 6.1e-71 271.2 184 77.2
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 3.0e-70 268.9 183 74.9
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 4.4e-69 265.0 183 76.0
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 4.4e-69 265.0 187 73.8
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 5.7e-69 264.6 187 73.3
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.7e-68 263.1 181 76.8
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.8e-68 262.3 187 72.7
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 8.2e-68 260.8 187 71.1
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 2.4e-67 259.2 182 73.6
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.4e-67 259.2 178 74.7
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 4.1e-67 258.5 181 74.0
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.5e-66 256.5 187 74.3
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.0e-66 256.1 187 72.2
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.6e-66 255.8 175 73.1
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 3.5e-66 255.4 187 69.0
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 1.0e-65 253.8 183 73.2
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.0e-65 253.8 183 70.5
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.7e-65 253.1 186 71.5
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.9e-65 252.3 179 76.0
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 2.9e-65 252.3 187 69.0
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.9e-65 252.3 188 69.7
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 6.5e-65 251.1 186 71.5
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.5e-64 250.0 188 69.1
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.9e-64 249.6 188 68.1
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 7.2e-64 247.7 188 68.6
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 9.4e-64 247.3 183 70.5
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.6e-63 246.5 188 66.5
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 2.7e-63 245.7 182 70.9
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 4.7e-63 245.0 188 71.8
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.0e-62 243.8 182 69.2
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 6.7e-62 241.1 181 68.0
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 8.8e-62 240.7 187 64.2
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 8.8e-62 240.7 183 68.9
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.5e-61 240.0 190 67.4
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 2.0e-61 239.6 187 65.8
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.0e-61 239.6 174 70.1
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 2.6e-61 239.2 181 71.3
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.3e-61 238.8 201 65.2
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 5.7e-61 238.0 174 70.1
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 7.5e-61 237.7 182 67.0
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 3.7e-60 235.3 187 63.6
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 4.8e-60 235.0 173 67.1
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 6.3e-60 234.6 182 69.2
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 6.3e-60 234.6 182 67.0
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 4.1e-59 231.9 182 65.4
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 9.1e-59 230.7 182 65.9
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.2e-58 230.3 182 65.9
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.6e-58 229.9 182 65.4
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 2.0e-58 229.6 185 64.9
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 3.5e-58 228.8 181 65.2
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 5.9e-58 228.0 181 65.2
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 7.7e-58 227.6 182 64.8
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 1.0e-57 227.3 187 64.7
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 1.7e-57 226.5 187 64.2
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 3.8e-57 225.3 181 65.7
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 8.5e-57 224.2 184 65.2
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.9e-56 223.0 185 63.2
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 2.5e-56 222.6 187 63.1
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 5.5e-56 221.5 173 65.3
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 7.2e-56 221.1 185 62.7
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 7.2e-56 221.1 170 70.0
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 2.1e-55 219.5 187 62.6
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 2.7e-55 219.2 183 60.7
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 3.6e-55 218.8 186 65.1
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.0e-54 217.2 185 63.2
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.4e-54 216.9 184 62.5
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.8e-54 216.5 184 62.5
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 3.0e-54 215.7 185 60.5
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 3.0e-54 215.7 185 60.5
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 6.8e-54 214.5 187 59.4
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 2.0e-53 213.0 187 59.9
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 5.7e-53 211.5 181 59.7
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 1.3e-52 210.3 185 58.9
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.3e-52 210.3 185 58.9
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.7e-52 209.9 184 63.6
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 2.2e-52 209.5 179 61.5
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 3.7e-52 208.8 185 57.3
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 3.7e-52 208.8 185 58.9
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 4.8e-52 208.4 173 61.8
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 1.4e-51 206.8 182 59.9
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 2.4e-51 206.1 188 62.8
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 3.5e-50 202.2 181 59.7
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 5.0e-49 198.4 189 61.4
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 8.5e-49 197.6 196 55.1
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 3.2e-48 195.7 184 58.7
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 4.2e-48 195.3 175 60.0
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 4.2e-48 195.3 175 60.0
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 4.2e-48 195.3 196 54.6
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 5.5e-48 194.9 173 63.0
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 7.2e-48 194.5 185 55.1
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 7.2e-48 194.5 183 54.6
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.2e-47 193.7 185 54.6
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.6e-47 193.4 186 54.3
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 2.1e-47 193.0 171 61.4
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 2.7e-47 192.6 120 80.0
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.0e-46 190.7 182 53.8
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 5.2e-46 188.3 185 54.1
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 9.8e-45 184.1 174 57.5
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 4.9e-44 181.8 186 53.8
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 8.3e-44 181.0 182 54.9
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 5.6e-40 168.3 111 75.7
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.2e-39 167.2 182 51.6
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 4.7e-39 165.2 124 68.5
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 6.1e-39 164.9 124 70.2
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 1.2e-37 160.6 187 51.9
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 3.4e-37 159.1 167 50.9
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 5.7e-37 158.3 202 46.0
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 2.0e-34 149.8 158 52.5
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 2.5e-32 142.9 175 51.4
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 3.1e-30 136.0 182 43.4
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 7.5e-29 131.3 182 42.3
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 7.5e-29 131.3 182 42.3
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.2e-28 129.8 82 79.3
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 8.3e-28 127.9 182 41.2
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 4.6e-26 122.1 179 41.3
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 6.0e-26 121.7 182 41.8
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 9.5e-24 114.4 182 40.1
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 2.0e-21 106.7 138 44.2
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 4.4e-21 105.5 148 37.8
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 4.4e-21 105.5 169 38.5
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 9.8e-21 104.4 182 37.9
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 4.9e-20 102.1 171 40.4
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 2.7e-18 96.3 162 35.8
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.0e-17 94.4 182 36.3
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 6.6e-17 91.7 74 66.2
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 1.9e-16 90.1 74 63.5
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 1.9e-16 90.1 74 63.5
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 1.6e-15 87.0 65 72.3
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 6.2e-15 85.1 61 70.5
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 5.2e-14 82.0 160 36.2
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 5.2e-14 82.0 168 34.5
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 3.7e-12 75.9 118 33.9
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 1.9e-11 73.6 81 48.1
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 4.1e-11 72.4 79 43.0
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 4.1e-11 72.4 50 70.0
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 3.5e-10 69.3 118 40.7
Oeu042654.1 Olea europaea HOM05D004800 ORTHO05D005842 1.9e-08 63.5 94 45.7
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 8.1e-07 58.2 50 62.0
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 4.0e-06 55.8 173 30.1
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 5.2e-06 55.5 47 57.4


User provided reference genes

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