Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 0.0e+00 1289.6 799 100.0
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.8e-226 788.5 821 60.5
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 5.4e-217 758.4 736 62.5
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 1.6e-216 756.9 800 56.0
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 8.9e-212 741.1 642 66.4
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 8.0e-205 718.0 755 60.1
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 4.0e-204 715.7 661 62.5
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 2.3e-191 673.3 900 51.4
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.0e-183 646.4 666 56.3
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 5.8e-179 632.1 688 53.3
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.7e-178 630.6 679 54.1
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.3e-175 620.9 686 54.4
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.3e-175 620.9 645 54.0
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.1e-174 617.8 654 56.0
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.4e-172 610.1 653 55.9
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.5e-166 590.9 700 49.7
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.5e-163 580.9 711 52.0
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.5e-163 580.9 683 52.6
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 4.5e-163 579.3 771 46.3
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.1e-161 574.7 678 50.1
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 3.0e-159 566.6 681 51.8
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 6.7e-159 565.5 667 49.9
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 8.7e-159 565.1 681 51.7
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.5e-158 564.3 681 51.5
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 3.3e-158 563.1 705 51.6
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 4.3e-158 562.8 651 51.0
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 1.6e-157 560.8 618 52.4
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 6.5e-154 548.9 675 52.6
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 6.5e-154 548.9 680 51.2
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 4.6e-152 542.7 809 45.7
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 8.7e-151 538.5 786 46.2
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.9e-150 537.3 720 50.4
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.1e-149 533.9 697 48.6
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 2.8e-149 533.5 761 47.6
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 6.3e-149 532.3 655 50.4
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 5.9e-147 525.8 700 48.3
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.0e-146 525.0 654 46.5
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 1.4e-145 521.2 723 49.0
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 7.2e-145 518.8 685 50.7
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 3.6e-144 516.5 689 46.9
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 5.3e-140 502.7 683 46.6
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 5.9e-139 499.2 689 50.5
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 3.8e-138 496.5 683 48.5
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.4e-137 494.6 697 50.4
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 1.9e-137 494.2 715 42.4
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 2.1e-136 490.7 669 46.3
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.0e-135 488.4 674 50.1
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 2.6e-134 483.8 704 47.4
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 3.3e-134 483.4 685 43.9
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.8e-133 480.3 580 47.2
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 5.3e-132 476.1 671 45.8
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 3.4e-131 473.4 697 46.6
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.3e-130 471.5 728 45.1
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 3.8e-130 469.9 668 48.2
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 3.8e-130 469.9 756 43.8
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.9e-129 467.6 668 47.9
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 1.2e-128 464.9 727 42.9
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 3.6e-128 463.4 668 43.3
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.0e-127 461.8 714 46.6
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.8e-127 461.1 697 46.5
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 3.0e-127 460.3 669 45.7
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.9e-127 459.9 753 42.8
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 8.8e-127 458.8 672 46.1
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 3.3e-126 456.8 643 42.1
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 2.2e-125 454.1 684 44.9
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 2.4e-124 450.7 701 45.2
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 5.3e-124 449.5 669 45.4
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.6e-123 448.0 666 40.7
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 2.0e-123 447.6 742 42.6
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 3.5e-123 446.8 775 38.5
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.3e-122 444.9 737 45.3
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.8e-122 443.4 671 42.9
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 8.5e-122 442.2 683 45.8
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 2.1e-120 437.6 670 47.5
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 6.7e-119 432.6 706 39.4
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.5e-118 431.4 681 42.6
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 3.3e-118 430.3 769 39.8
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 7.5e-118 429.1 674 42.3
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 9.7e-118 428.7 683 42.2
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.2e-117 427.6 678 41.7
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 7.0e-116 422.5 776 40.1
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.2e-114 417.5 720 38.1
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 5.0e-114 416.4 673 41.5
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 6.5e-114 416.0 653 39.5
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 6.5e-114 416.0 669 42.5
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 8.5e-114 415.6 690 41.9
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.6e-112 410.2 659 41.0
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 3.0e-111 407.1 696 37.8
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 5.7e-110 402.9 848 38.0
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.7e-109 401.4 658 40.9
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 3.1e-108 397.1 665 40.8
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 9.1e-108 395.6 676 41.3
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.2e-107 395.2 772 39.2
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 2.0e-107 394.4 693 42.1
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 3.5e-107 393.7 693 42.1
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 5.9e-107 392.9 744 37.5
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 5.9e-107 392.9 692 42.1
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 5.9e-107 392.9 649 41.0
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.3e-106 391.7 696 42.1
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 9.5e-105 385.6 660 39.4
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.8e-103 381.3 712 43.0
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 3.1e-100 370.5 743 38.6
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 7.8e-99 365.9 669 40.7
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 4.7e-96 356.7 667 40.2
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 2.6e-94 350.9 521 46.6
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 1.2e-91 342.0 685 35.5
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 2.7e-91 340.9 804 32.1
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.0e-90 339.0 822 32.5
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 5.2e-87 326.6 648 35.5
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.6e-80 305.1 708 32.8
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 9.5e-73 279.3 351 49.9
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 9.5e-73 279.3 308 51.9
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 2.6e-70 271.2 575 40.0
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.3e-69 268.9 645 31.6
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.3e-69 268.9 431 46.6
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.1e-65 255.8 680 30.6
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 4.3e-65 253.8 664 33.0
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 2.1e-64 251.5 275 50.5
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.9e-57 228.4 277 56.3
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.3e-57 227.6 274 51.5
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.4e-47 194.9 652 27.5
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.5e-46 192.2 178 53.4
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 6.4e-45 186.8 396 38.4
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 3.1e-39 167.9 204 43.1
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.9e-39 166.8 161 53.4
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 6.9e-39 166.8 145 58.6
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 4.5e-38 164.1 144 59.7
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.6e-32 145.6 142 52.1
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 2.2e-32 145.2 473 30.7
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 3.7e-24 117.9 210 33.3
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 8.2e-24 116.7 199 35.2
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 2.0e-22 112.1 797 24.0
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 4.2e-20 104.4 294 31.3
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 2.1e-19 102.1 151 37.1
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 3.7e-16 91.3 445 28.3
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 5.9e-14 84.0 76 57.9
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.4e-12 79.3 174 32.8
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.4e-07 62.8 97 36.1
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 4.1e-07 61.2 159 30.2
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 1.2e-06 59.7 62 48.4


User provided reference genes

Program Settings