Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 5.4e-235 817.4 444 100.0
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 2.5e-224 781.9 449 96.2
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 5.2e-161 571.6 425 76.0
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 6.8e-153 544.7 510 65.3
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 3.5e-149 532.3 421 69.4
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.5e-144 516.9 419 70.2
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 2.0e-144 516.5 422 70.6
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 6.3e-143 511.5 422 69.0
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 4.1e-142 508.8 430 70.5
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 7.0e-142 508.1 424 65.8
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 7.0e-142 508.1 457 65.4
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 3.5e-141 505.8 338 82.5
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 5.0e-140 501.9 429 67.4
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 6.6e-140 501.5 429 67.4
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 8.6e-140 501.1 423 68.6
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.5e-139 499.6 460 65.7
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 4.7e-138 495.4 431 66.1
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 4.0e-137 492.3 430 65.6
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.2e-136 490.7 422 67.8
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 3.4e-136 489.2 425 67.5
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 4.4e-136 488.8 429 65.7
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 1.7e-135 486.9 425 66.4
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 5.4e-134 481.9 436 65.4
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 2.7e-133 479.6 425 65.4
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 6.6e-132 474.9 435 63.7
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.5e-131 473.8 412 68.0
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 2.5e-131 473.0 388 69.6
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-131 473.0 388 69.6
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 3.3e-131 472.6 430 65.1
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.8e-130 469.5 388 69.3
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 4.7e-130 468.8 391 70.6
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 6.2e-130 468.4 429 63.2
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 8.0e-130 468.0 425 64.2
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.2e-128 464.2 425 64.0
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 2.2e-127 459.9 427 64.2
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 6.4e-127 458.4 364 70.1
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.9e-126 456.8 368 70.1
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 3.2e-126 456.1 380 67.1
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 2.7e-125 453.0 435 61.6
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 3.5e-125 452.6 426 62.4
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.6e-125 452.2 362 71.5
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 1.3e-124 450.7 427 61.1
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 2.3e-124 449.9 422 63.0
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 6.6e-124 448.4 367 66.5
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 1.9e-123 446.8 366 66.9
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 5.6e-123 445.3 387 64.6
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.3e-123 444.9 343 73.2
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 9.5e-123 444.5 433 60.3
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 1.2e-122 444.1 432 61.6
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 2.1e-122 443.4 368 65.8
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 4.7e-122 442.2 345 72.8
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 3.1e-121 439.5 429 61.8
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.1e-121 439.5 432 59.5
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 2.0e-120 436.8 379 65.4
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 6.4e-119 431.8 368 64.4
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.3e-119 431.4 465 58.5
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.2e-117 427.6 372 64.2
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 2.1e-117 426.8 372 65.6
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 3.5e-117 426.0 358 65.6
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 3.9e-116 422.5 421 58.2
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 5.1e-116 422.2 373 65.1
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 5.1e-116 422.2 373 65.1
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 5.1e-116 422.2 374 65.0
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 6.6e-116 421.8 373 65.4
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 6.6e-116 421.8 373 65.4
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 8.6e-116 421.4 375 60.8
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 1.5e-115 420.6 361 65.9
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 1.4e-113 414.1 374 64.7
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-113 413.3 477 56.0
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 6.8e-113 411.8 373 63.8
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 2.6e-112 409.8 417 57.6
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 6.4e-111 405.2 393 57.5
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 4.2e-110 402.5 374 64.2
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 6.0e-109 398.7 338 63.0
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 2.5e-107 393.3 340 62.1
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 1.3e-106 391.0 350 66.0
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 2.8e-106 389.8 418 54.3
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 9.0e-105 384.8 425 54.6
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 4.4e-104 382.5 484 50.0
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 2.2e-103 380.2 378 60.8
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.7e-100 370.5 359 55.2
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 1.1e-99 367.9 283 70.3
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 5.3e-97 359.0 356 58.1
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 6.4e-95 352.1 350 58.9
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 4.2e-94 349.4 333 60.1
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.5e-91 340.9 356 53.1
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 3.4e-88 329.7 331 59.8
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 8.4e-87 325.1 302 64.9
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.1e-86 324.7 396 51.8
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.9e-86 323.9 449 47.7
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.3e-83 312.8 373 51.5
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 6.9e-81 305.4 269 63.9
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 4.6e-77 292.7 342 52.6
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 7.4e-75 285.4 212 73.1
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 4.8e-74 282.7 262 61.1
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 2.6e-72 276.9 264 57.6
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 8.5e-71 271.9 259 59.5
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 8.8e-68 261.9 243 67.5
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.5e-67 261.2 482 42.1
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.3e-66 258.1 435 40.9
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 4.8e-66 256.1 221 67.0
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 4.1e-65 253.1 214 65.9
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.1e-59 235.0 352 42.6
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 9.1e-57 225.3 233 61.4
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 3.6e-53 213.4 230 56.5
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 2.3e-52 210.7 338 39.6
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 1.1e-51 208.4 287 48.4
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 1.7e-50 204.5 329 41.6
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 5.3e-49 199.5 353 37.1
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 5.3e-49 199.5 226 55.8
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 5.9e-48 196.1 191 58.6
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 5.5e-46 189.5 182 55.5
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 1.2e-45 188.3 223 55.6
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 3.4e-43 180.3 122 74.6
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 1.1e-41 175.3 350 36.6
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-38 164.5 218 42.7
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 7.2e-38 162.5 150 62.0
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.6e-35 154.1 362 35.6
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 1.7e-34 151.4 132 60.6
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 3.5e-32 143.7 187 48.1
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 4.5e-32 143.3 166 54.8
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.7e-31 141.4 118 60.2
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.7e-31 141.4 102 75.5
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 6.6e-31 139.4 338 34.6
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 5.6e-30 136.3 84 78.6
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 2.8e-29 134.0 296 31.1
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 3.0e-28 130.6 104 67.3
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.6e-27 127.5 112 68.8
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.4e-27 126.7 82 84.1
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 7.5e-27 125.9 351 29.9
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 6.4e-26 122.9 117 56.4
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.8e-25 121.3 110 62.7
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.0e-24 117.9 355 28.2
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 2.7e-24 117.5 161 46.6
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 1.0e-23 115.5 105 67.6
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.7e-23 114.8 383 29.5
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 5.6e-22 109.8 124 48.4
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 9.5e-22 109.0 107 57.0
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.2e-21 108.6 67 89.6
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 2.1e-21 107.8 58 89.7
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 2.3e-20 104.4 80 73.8
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 6.8e-20 102.8 106 49.1
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 1.5e-19 101.7 115 47.0
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 5.4e-17 93.2 106 50.9
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 2.7e-16 90.9 59 76.3
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 7.8e-16 89.4 160 35.0
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 8.1e-13 79.3 55 72.7
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.8e-12 78.2 59 71.2
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 1.4e-09 68.6 52 73.1
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 2.1e-08 64.7 53 64.2
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 6.0e-08 63.2 35 85.7
DCAR_017587 Daucus carota HOM05D000943 ORTHO05D008314 5.1e-07 60.1 386 24.6
Hund10402 Selenicereus undatus HOM05D000943 ORTHO05D008314 1.5e-06 58.5 403 24.3
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 3.3e-06 57.4 58 56.9


User provided reference genes

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