Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1671.4 838 100.0
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1640.6 838 98.0
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1482.2 831 88.6
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1458.7 915 81.3
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1453.7 827 87.8
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1441.0 838 85.7
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1429.8 838 84.2
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1429.1 967 76.2
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1419.8 838 83.2
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1417.9 838 83.1
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1416.0 838 83.1
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1406.3 838 82.8
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1406.3 837 83.0
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1405.2 838 83.4
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1401.7 838 82.5
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1399.4 838 81.9
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1395.9 838 82.6
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1394.4 868 81.0
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1394.4 858 81.4
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1394.0 838 82.6
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1393.6 838 81.9
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1390.2 838 81.5
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1387.9 838 81.6
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1387.9 838 81.9
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1384.8 838 81.6
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1384.4 838 81.0
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1381.3 838 82.3
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1380.2 838 81.1
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1379.8 840 81.9
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1378.6 858 80.9
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1374.4 838 81.3
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1373.6 838 81.7
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1373.6 838 81.7
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1373.2 844 80.7
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1373.2 840 81.8
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1369.4 838 80.9
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1367.4 838 80.9
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1365.5 838 80.5
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1354.3 870 78.4
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1353.2 845 79.1
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1351.3 841 79.1
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1345.5 838 79.0
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1345.1 911 74.8
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1344.3 839 79.6
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1341.3 838 78.6
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1338.6 839 80.0
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1338.6 838 79.1
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1338.2 839 79.0
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1335.5 838 78.9
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1335.5 838 78.9
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1329.7 839 79.3
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1327.4 840 79.5
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 838 78.6
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1324.3 827 79.7
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1322.8 839 78.4
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1322.4 838 78.5
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1319.7 838 79.4
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1319.3 838 77.2
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 838 77.4
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 843 76.7
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1315.1 838 78.5
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1312.7 838 77.4
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1312.0 838 77.2
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 904 74.1
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 839 77.8
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1309.7 839 77.1
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1308.1 867 76.1
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1307.7 838 77.1
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1304.7 838 76.7
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1303.9 839 77.0
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1303.5 850 77.4
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1303.1 839 76.8
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1302.7 838 76.3
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1302.3 839 77.6
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1300.0 845 76.4
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1298.9 840 77.0
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1297.3 845 76.2
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1297.0 911 72.9
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1294.6 845 76.1
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1293.9 764 83.0
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1285.8 781 80.9
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1284.2 838 76.1
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1282.3 765 82.2
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1245.7 751 82.0
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1244.6 842 75.3
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1243.0 823 75.5
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1240.3 817 76.5
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1221.1 776 78.5
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1216.1 842 74.6
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1212.6 838 74.0
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1209.1 768 77.6
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1197.2 839 73.4
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1188.3 794 74.9
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1176.0 839 69.0
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1166.8 858 67.2
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1165.2 838 71.5
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1151.0 824 70.0
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1146.7 691 82.6
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1132.5 846 66.7
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1131.7 748 74.6
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1129.4 852 66.3
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1106.7 839 67.7
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1093.2 696 77.6
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 3.1e-308 1061.6 853 63.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 6.9e-308 1060.4 839 63.4
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 2.2e-306 1055.4 654 79.5
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 3.0e-287 991.9 845 63.9
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.7e-251 872.5 642 70.6
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 1.7e-237 826.6 542 74.5
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 6.0e-227 791.6 513 75.8
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 7.4e-209 731.5 418 85.9
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.8e-154 550.8 329 82.1
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 3.1e-122 443.7 300 77.3
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 8.6e-117 425.6 307 67.8
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 4.4e-113 413.3 285 71.6
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 3.8e-112 410.2 254 80.3
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 4.2e-95 353.6 194 88.7
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 4.0e-90 337.0 389 50.6
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 4.9e-88 330.1 273 62.6
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 1.1e-68 265.8 275 55.3
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 5.3e-66 256.9 182 71.4
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.7e-51 208.8 139 74.1
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.2e-46 192.6 140 69.3
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 2.8e-43 181.4 117 76.9
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 3.4e-36 157.9 94 83.0
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 5.0e-32 144.1 82 82.9
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 9.5e-31 139.8 130 56.9
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 3.6e-30 137.9 82 84.1
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 8.3e-27 126.7 103 63.1
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 4.6e-25 120.9 74 82.4
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 6.6e-24 117.1 76 72.4
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 1.6e-22 112.5 84 69.0
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 5.2e-21 107.5 67 80.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 6.8e-21 107.1 68 73.5
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 4.0e-13 81.3 104 51.0
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 4.4e-12 77.8 52 73.1
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.2e-09 69.7 42 85.7
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 2.5e-07 62.0 41 75.6
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 1.2e-06 59.7 79 40.5


User provided reference genes

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