Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.5e-160 569.7 329 100.0
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 9.3e-107 391.0 339 69.9
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 6.9e-102 374.8 343 68.5
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 9.9e-101 370.9 353 64.0
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 2.2e-100 369.8 354 65.0
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 8.4e-100 367.9 343 68.5
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.1e-99 367.5 341 66.0
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 3.2e-99 365.9 342 66.4
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 4.2e-99 365.5 349 68.5
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 5.4e-99 365.2 349 67.9
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 9.3e-99 364.4 347 64.8
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.3e-97 360.5 344 66.3
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 2.5e-96 356.3 367 64.0
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 1.6e-95 353.6 347 67.1
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 2.1e-95 353.2 337 63.2
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 4.0e-94 349.0 358 59.8
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 6.9e-94 348.2 345 62.9
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.5e-93 347.1 346 60.4
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 7.6e-93 344.7 373 62.7
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 7.6e-93 344.7 357 62.7
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 2.9e-92 342.8 336 62.8
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 6.4e-92 341.7 360 61.9
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 8.4e-92 341.3 352 61.1
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 5.5e-91 338.6 344 59.9
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 9.3e-91 337.8 345 64.9
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 4.6e-90 335.5 346 63.0
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 6.0e-90 335.1 343 61.5
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 6.0e-90 335.1 360 60.6
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 7.9e-90 334.7 352 63.1
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 2.3e-89 333.2 343 61.2
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 5.1e-89 332.0 357 58.0
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 5.1e-89 332.0 359 61.3
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 6.7e-89 331.6 350 62.6
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.9e-88 330.1 358 55.6
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 7.4e-88 328.2 358 55.9
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 7.4e-88 328.2 359 56.0
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 7.4e-88 328.2 360 56.9
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 1.3e-87 327.4 360 54.4
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 2.1e-87 326.6 337 64.4
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 2.8e-87 326.2 360 61.7
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 2.8e-87 326.2 359 57.1
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 6.2e-87 325.1 358 58.1
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 6.2e-87 325.1 342 65.8
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.4e-86 323.2 344 57.0
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 2.4e-86 323.2 363 57.9
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 3.4e-85 319.3 366 59.3
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.7e-84 317.0 378 56.1
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 3.8e-84 315.8 356 59.3
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 6.5e-84 315.1 341 59.2
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 2.5e-83 313.2 359 61.3
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 4.2e-83 312.4 356 62.1
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 4.2e-83 312.4 358 57.3
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 5.5e-83 312.0 335 59.1
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 2.1e-82 310.1 329 57.1
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 2.7e-82 309.7 353 52.7
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 2.7e-82 309.7 366 55.5
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.2e-79 300.1 339 52.5
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 4.8e-79 298.9 345 52.2
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 2.6e-77 293.1 368 54.9
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 5.9e-77 292.0 365 58.9
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 7.6e-77 291.6 359 52.4
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.7e-76 290.4 354 53.7
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 7.2e-75 285.0 346 55.8
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 7.2e-75 285.0 346 55.8
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 7.2e-75 285.0 346 55.8
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 9.4e-75 284.6 335 54.3
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.2e-74 284.3 333 54.1
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 7.9e-74 281.6 271 58.3
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 7.9e-74 281.6 344 54.9
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 7.9e-74 281.6 341 57.8
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 2.3e-73 280.0 348 53.4
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 3.0e-73 279.6 352 51.7
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 3.3e-72 276.2 326 51.8
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 3.3e-72 276.2 349 51.9
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 7.4e-72 275.0 371 52.6
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 4.8e-71 272.3 360 53.9
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 1.1e-70 271.2 336 56.2
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.1e-70 271.2 329 54.7
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 1.4e-70 270.8 349 53.9
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.8e-70 270.4 338 51.5
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 5.3e-70 268.9 338 53.6
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 5.3e-70 268.9 354 53.4
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 1.2e-69 267.7 331 51.4
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.5e-69 267.3 333 53.5
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 2.0e-69 266.9 371 50.9
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-68 264.2 340 52.1
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 2.2e-68 263.5 276 59.1
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.9e-68 263.1 350 53.7
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 5.0e-68 262.3 357 52.4
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.4e-67 260.8 341 51.6
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 2.7e-66 256.5 335 51.3
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.7e-66 255.8 281 56.9
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.4e-65 254.2 347 49.9
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 3.0e-65 253.1 352 51.1
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 5.1e-65 252.3 352 49.1
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 6.7e-65 251.9 346 45.7
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 2.0e-64 250.4 343 46.9
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 5.7e-64 248.8 342 51.8
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 7.4e-64 248.4 335 51.6
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.7e-63 247.3 341 50.4
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.7e-63 247.3 340 55.0
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 2.2e-63 246.9 345 54.2
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 3.7e-63 246.1 347 53.3
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 3.7e-63 246.1 354 48.9
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.8e-62 243.8 367 48.5
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 5.3e-62 242.3 351 45.3
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 2.0e-61 240.4 343 49.3
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.0e-60 238.0 319 49.5
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 3.2e-59 233.0 337 50.7
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 9.4e-59 231.5 365 49.6
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 1.2e-58 231.1 366 53.0
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 1.2e-58 231.1 366 53.0
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 1.2e-58 231.1 366 53.0
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 2.1e-58 230.3 236 61.9
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 3.6e-58 229.6 290 53.1
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 6.1e-58 228.8 365 46.6
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 2.3e-57 226.9 334 49.7
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 2.3e-57 226.9 330 47.6
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.3e-57 226.9 347 49.3
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 5.2e-57 225.7 329 47.7
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-56 224.2 340 46.8
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-56 224.2 340 46.8
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 1.5e-56 224.2 340 46.8
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.6e-56 223.4 339 44.5
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 3.3e-56 223.0 340 46.8
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 3.3e-56 223.0 352 47.2
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 5.7e-56 222.2 337 49.0
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 7.4e-56 221.9 356 46.9
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 9.7e-56 221.5 334 47.3
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 9.7e-56 221.5 328 45.1
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 1.7e-55 220.7 346 48.3
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 2.2e-55 220.3 326 45.7
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 2.2e-55 220.3 326 45.7
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 2.2e-55 220.3 267 53.9
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 2.8e-55 219.9 326 45.7
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 2.8e-55 219.9 333 47.4
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 3.7e-55 219.5 339 46.3
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.1e-54 218.0 336 44.9
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 7.7e-53 211.8 227 60.4
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 2.9e-52 209.9 337 47.8
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 1.1e-51 208.0 357 45.4
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.8e-49 200.7 342 43.3
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 6.7e-49 198.7 280 41.8
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 1.3e-47 194.5 187 57.8
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 1.3e-44 184.5 330 39.7
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 6.5e-44 182.2 344 38.1
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 6.5e-44 182.2 369 39.3
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 6.5e-44 182.2 342 43.9
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 8.5e-44 181.8 322 40.4
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.1e-43 181.4 307 45.6
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 8.0e-42 175.3 335 39.7
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.7e-39 167.5 394 36.5
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.2e-39 167.2 334 38.3
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 1.4e-38 164.5 322 37.6
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 9.1e-38 161.8 331 40.2
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.6e-37 161.0 347 40.3
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.0e-37 160.6 322 37.6
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.0e-36 158.3 411 34.8
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 8.6e-36 155.2 322 36.3
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 4.2e-35 152.9 229 40.2
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 5.5e-35 152.5 262 40.1
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 9.5e-35 151.8 324 38.9
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 4.4e-24 116.3 333 39.0
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 2.9e-23 113.6 336 35.7
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 4.9e-23 112.8 190 44.2
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.6e-21 107.8 353 40.2
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 2.7e-21 107.1 194 40.2
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.3e-17 94.0 165 38.8
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 6.8e-17 92.4 113 56.6
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 3.4e-16 90.1 195 35.9
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.2e-10 71.6 240 27.1
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.4e-09 68.2 287 26.8
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 6.8e-09 65.9 290 25.2
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-08 64.7 94 42.6
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.3e-07 61.6 393 23.4
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 2.2e-07 60.8 103 40.8
Actinidia27197 Actinidia chinensis HOM05D003923 ORTHO05D004553 3.7e-07 60.1 59 61.0
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 8.3e-07 58.9 316 25.3
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 1.1e-06 58.5 302 22.5
HPP92_019313 Vanilla planifolia HOM05D003923 ORTHO05D004553 1.9e-06 57.8 233 27.9
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.4e-06 57.4 303 22.8
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 3.2e-06 57.0 59 52.5
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.1e-06 56.6 309 23.9
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.1e-06 56.6 314 25.5
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 7.1e-06 55.8 53 50.9
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 9.2e-06 55.5 308 23.7


User provided reference genes

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