Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.6e-115 417.9 212 100.0
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.1e-108 394.8 212 95.3
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 5.4e-108 394.4 212 95.3
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.2e-99 366.7 214 89.3
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.6e-99 366.3 214 87.4
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 5.1e-98 361.3 218 84.9
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 9.6e-97 357.1 215 87.9
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 2.1e-96 355.9 219 83.6
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 6.2e-96 354.4 219 83.6
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.4e-95 353.2 214 84.1
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 4.0e-95 351.7 219 82.2
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.2e-94 350.1 217 84.3
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 2.6e-94 349.0 219 82.2
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 4.4e-94 348.2 217 84.8
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 5.8e-94 347.8 212 88.7
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 9.9e-94 347.1 219 82.6
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.3e-93 346.7 219 81.7
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.9e-93 345.5 219 81.3
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 6.4e-93 344.4 219 82.2
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 2.1e-91 339.3 229 78.2
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.0e-90 337.0 214 83.6
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.3e-90 336.7 218 80.7
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.3e-90 336.7 217 81.1
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 3.0e-90 335.5 219 79.5
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 8.7e-90 334.0 214 83.2
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.1e-89 333.6 214 79.9
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.9e-89 332.8 220 79.5
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 2.5e-89 332.4 219 79.0
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 4.3e-89 331.6 220 77.7
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.6e-89 331.3 220 79.1
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 5.6e-89 331.3 215 80.9
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 7.3e-89 330.9 218 80.3
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.6e-88 329.7 214 79.0
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.1e-88 329.3 220 78.6
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 4.8e-88 328.2 212 82.1
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 8.1e-88 327.4 220 78.6
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 1.4e-87 326.6 216 78.7
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 1.8e-87 326.2 217 78.8
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 3.4e-86 322.0 214 78.5
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 3.8e-85 318.5 214 77.6
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.1e-84 317.0 219 76.7
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.9e-84 316.2 216 78.2
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 2.4e-84 315.8 209 77.0
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 4.2e-84 315.1 219 76.7
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 5.4e-84 314.7 215 78.6
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 9.3e-84 313.9 207 79.2
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 2.1e-83 312.8 219 76.3
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.0e-82 310.5 209 78.5
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.7e-82 309.7 212 76.9
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 2.3e-82 309.3 212 76.4
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.3e-82 309.3 218 75.7
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.0e-82 308.9 207 78.3
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 3.9e-82 308.5 219 75.3
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 5.1e-82 308.1 213 75.1
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.1e-82 308.1 207 78.3
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 5.1e-82 308.1 209 78.5
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 6.6e-82 307.8 211 75.4
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.6e-82 307.8 211 75.4
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.6e-82 307.8 211 75.4
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 8.7e-82 307.4 212 75.9
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.5e-81 306.6 211 74.9
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.9e-81 306.2 210 78.1
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 2.5e-81 305.8 212 76.4
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 3.3e-81 305.4 216 75.9
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 4.3e-81 305.1 212 75.5
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.3e-80 303.5 218 74.3
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.2e-80 301.2 210 77.6
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.8e-79 299.7 212 75.9
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.8e-79 299.7 208 76.4
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 2.6e-78 295.8 217 76.0
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 9.9e-78 293.9 212 72.2
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 9.9e-78 293.9 192 80.7
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.3e-77 293.5 217 74.2
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 2.2e-77 292.7 217 74.2
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 3.8e-77 292.0 222 71.6
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.8e-77 292.0 195 80.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 4.9e-77 291.6 217 73.7
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 4.9e-77 291.6 217 73.7
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 4.9e-77 291.6 215 72.6
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 8.4e-77 290.8 174 85.6
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.1e-76 290.4 174 85.6
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 2.4e-76 289.3 217 73.7
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 2.4e-76 289.3 174 85.6
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 3.2e-76 288.9 214 72.4
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 3.2e-76 288.9 217 71.4
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 7.1e-76 287.7 214 74.8
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 6.0e-75 284.6 189 76.7
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 7.9e-75 284.3 189 76.2
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 7.9e-75 284.3 214 73.4
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 3.0e-74 282.3 214 73.8
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 3.0e-74 282.3 214 73.8
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 3.0e-74 282.3 257 63.0
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 5.1e-74 281.6 214 73.8
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 5.1e-74 281.6 220 70.5
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 6.7e-74 281.2 216 71.3
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 6.7e-74 281.2 214 70.6
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.1e-73 280.4 214 71.5
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 7.4e-73 277.7 216 70.8
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 9.6e-73 277.3 161 87.6
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.3e-72 276.9 212 70.8
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.6e-72 276.6 161 87.6
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.6e-72 276.6 161 87.6
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 3.7e-72 275.4 214 72.0
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.1e-71 273.9 174 83.9
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.4e-71 273.5 212 70.8
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 6.9e-71 271.2 221 67.9
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.5e-70 270.0 166 84.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.5e-70 270.0 208 70.2
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 4.5e-70 268.5 161 86.3
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.7e-69 266.5 160 85.6
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 3.8e-69 265.4 157 88.5
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 8.4e-69 264.2 161 85.1
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-68 263.8 216 69.0
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.4e-68 263.5 174 78.7
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 7.1e-68 261.2 161 82.6
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 9.3e-68 260.8 208 69.7
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.6e-67 260.0 175 79.4
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.7e-67 259.2 204 67.6
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 8.7e-66 254.2 197 73.1
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 2.5e-65 252.7 161 82.0
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.8e-64 249.2 132 93.9
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 2.2e-61 239.6 215 64.7
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 4.6e-59 231.9 176 72.7
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 7.9e-59 231.1 153 76.5
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.3e-58 230.3 174 70.1
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 7.4e-57 224.6 155 74.8
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.2e-56 223.0 213 60.6
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 8.2e-56 221.1 125 89.6
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-54 217.2 214 60.3
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.5e-54 216.9 227 55.1
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 2.6e-54 216.1 198 60.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.2e-53 213.0 149 73.2
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.1e-52 210.7 223 53.4
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.2e-51 207.2 162 69.1
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 2.1e-51 206.5 201 57.7
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.5e-49 200.3 244 46.7
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 4.8e-48 195.3 172 64.5
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.1e-47 192.2 185 60.0
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 6.9e-47 191.4 144 70.1
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.5e-44 181.8 96 92.7
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.1e-43 178.3 96 88.5
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 6.1e-43 178.3 96 88.5
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.0e-41 173.3 116 76.7
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 4.1e-39 165.6 95 80.0
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 3.0e-34 149.4 104 76.9
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.1e-33 147.5 147 51.0
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.4e-31 139.8 86 80.2
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 4.7e-27 125.6 64 93.8
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.5e-25 120.6 82 76.8
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 9.1e-23 111.3 58 96.6
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.1e-19 98.6 61 78.7
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 4.1e-15 85.9 110 49.1
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.0e-15 85.1 92 52.2
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 9.2e-15 84.7 108 49.1
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.7e-13 80.5 51 80.4
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 2.5e-12 76.6 55 72.7
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.3e-08 64.3 35 91.4


User provided reference genes

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