Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.5e-300 1035.4 532 100.0
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 2.5e-247 858.6 570 78.6
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 2.3e-232 808.9 570 75.8
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 3.0e-232 808.5 571 75.1
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 3.7e-230 801.6 570 73.5
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 9.1e-221 770.4 571 72.0
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 2.6e-220 768.8 571 70.8
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 8.8e-216 753.8 570 70.2
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 2.6e-215 752.3 563 69.1
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 1.7e-211 739.6 571 68.0
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 2.9e-211 738.8 549 71.6
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 1.5e-210 736.5 552 70.1
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 1.5e-210 736.5 571 68.5
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.6e-209 733.0 571 67.1
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 4.7e-209 731.5 569 68.0
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 4.7e-209 731.5 571 67.6
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 6.8e-208 727.6 556 68.9
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 1.2e-207 726.9 570 67.7
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 7.5e-207 724.2 570 67.5
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 6.3e-206 721.1 571 66.9
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 6.3e-206 721.1 501 73.9
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.1e-205 718.8 571 66.5
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 9.1e-205 717.2 571 66.4
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 9.1e-205 717.2 571 66.4
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 1.6e-204 716.5 570 66.7
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 8.5e-203 710.7 571 66.4
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.9e-202 709.5 568 66.0
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 4.2e-202 708.4 574 67.8
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 9.4e-202 707.2 571 65.8
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 2.1e-201 706.1 573 66.5
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 2.1e-201 706.1 554 67.1
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 2.1e-201 706.1 549 68.3
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 6.8e-200 701.0 570 66.1
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.5e-199 699.9 568 65.7
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 2.0e-199 699.5 571 67.1
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 7.0e-197 691.0 571 66.0
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.2e-196 690.3 572 65.7
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 1.2e-196 690.3 572 65.7
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 2.0e-196 689.5 500 71.8
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 3.5e-196 688.7 574 66.2
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 4.5e-196 688.3 571 64.6
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 5.9e-196 688.0 575 65.0
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 1.7e-195 686.4 573 65.4
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 3.8e-195 685.3 573 63.9
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 8.6e-195 684.1 571 66.5
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 1.1e-194 683.7 571 66.0
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 1.5e-194 683.3 572 64.2
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.9e-194 682.9 572 64.3
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 2.5e-194 682.6 574 64.3
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 4.2e-194 681.8 572 62.2
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 5.5e-194 681.4 572 66.3
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 7.2e-194 681.0 574 63.4
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 9.5e-194 680.6 572 66.3
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 1.2e-193 680.2 575 65.4
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 8.0e-193 677.6 570 63.2
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.8e-192 676.4 504 70.0
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 2.3e-192 676.0 580 64.0
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 4.0e-192 675.2 570 65.1
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 6.8e-192 674.5 573 63.7
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 6.8e-192 674.5 570 65.3
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.5e-191 673.3 572 65.6
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.0e-191 672.9 572 64.2
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.0e-191 672.9 504 70.0
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 3.4e-191 672.2 575 64.0
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 9.8e-191 670.6 570 63.5
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 9.8e-191 670.6 576 64.4
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 1.7e-190 669.8 502 68.9
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.2e-190 669.5 504 68.8
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 2.2e-190 669.5 573 63.7
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.8e-190 669.1 572 64.0
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 2.8e-190 669.1 571 64.4
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 4.9e-190 668.3 571 63.7
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 8.3e-190 667.5 572 65.6
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 1.4e-189 666.8 573 63.0
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 1.2e-188 663.7 510 67.6
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 2.0e-188 662.9 571 64.4
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.5e-188 662.1 502 69.1
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 4.5e-188 661.8 571 62.5
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 7.8e-188 661.0 580 62.8
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 2.5e-186 656.0 578 62.3
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.6e-185 653.3 545 65.3
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 1.0e-184 650.6 570 64.0
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 1.8e-184 649.8 572 63.3
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.5e-183 646.7 573 61.4
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 1.4e-181 640.2 570 62.6
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.1e-181 638.6 575 61.0
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 7.0e-181 637.9 561 62.7
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 8.6e-179 630.9 585 59.3
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 2.5e-178 629.4 570 59.5
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 5.6e-178 628.2 573 62.5
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.2e-177 627.1 584 60.4
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 1.2e-177 627.1 572 61.9
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 2.8e-177 625.9 572 60.5
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 2.3e-176 622.9 584 60.3
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 1.5e-175 620.2 570 58.9
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 7.5e-175 617.8 573 61.3
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 1.2e-172 610.5 429 73.2
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 4.6e-172 608.6 575 59.0
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 7.8e-172 607.8 507 63.3
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.3e-171 607.1 573 58.5
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.7e-169 598.6 560 59.6
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 6.2e-169 598.2 392 75.5
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 4.0e-168 595.5 574 57.7
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 6.8e-168 594.7 577 58.4
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 3.4e-167 592.4 571 58.0
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 2.9e-166 589.3 559 57.8
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 4.1e-165 585.5 578 56.6
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 3.5e-164 582.4 575 55.0
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 2.3e-163 579.7 571 56.4
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 9.6e-162 574.3 569 56.1
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 2.1e-161 573.2 573 56.5
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 2.9e-158 562.8 351 79.2
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 1.1e-157 560.8 578 55.5
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 9.3e-157 557.8 507 57.4
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 2.8e-153 546.2 578 55.2
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 9.0e-152 541.2 516 56.4
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 7.6e-151 538.1 504 60.3
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 8.1e-145 518.1 383 66.3
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 5.5e-141 505.4 446 60.1
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 4.8e-137 492.3 517 53.2
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 2.1e-124 450.3 437 52.9
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.8e-123 447.2 454 52.6
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.5e-119 434.1 482 53.3
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.7e-118 430.6 480 54.0
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 3.2e-117 426.4 543 49.9
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.8e-115 420.6 460 56.3
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 2.8e-113 413.3 523 44.6
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 1.5e-111 407.5 258 76.7
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 5.7e-106 389.0 534 41.8
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 2.2e-102 377.1 446 46.9
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.5e-93 347.1 499 44.9
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 1.1e-88 331.6 355 54.6
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.4e-75 288.1 537 40.0
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 5.7e-74 282.7 267 59.6
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 5.4e-72 276.2 314 49.7
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 1.6e-68 264.6 469 36.7
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 1.6e-63 248.1 212 62.3
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 2.1e-60 237.7 326 39.9
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 2.8e-60 237.3 448 34.2
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 1.1e-35 155.6 209 45.9
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 1.1e-32 145.6 163 54.6
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 2.9e-17 94.4 95 55.8
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 4.6e-15 87.0 87 58.6
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 2.1e-12 78.2 183 28.4
Migut.K01391 Erythranthe guttata HOM05D002668 ORTHO05D003295 5.0e-09 67.0 277 23.8
ATR0585G146 Amborella trichopoda HOM05D002668 ORTHO05D003295 9.3e-08 62.8 278 24.1
SEGI_06316 Sequoiadendron giganteum HOM05D002668 ORTHO05D003295 9.3e-08 62.8 275 21.8
Dinv35102 Davidia involucrata HOM05D002668 ORTHO05D003295 2.1e-07 61.6 269 23.8
Potri.017G071900 Populus trichocarpa HOM05D002668 ORTHO05D003295 3.6e-07 60.8 277 23.1
CSS0029758 Camellia sinensis var. sinensis HOM05D002668 ORTHO05D003295 4.6e-07 60.5 276 22.8
ClCG10G013950 Citrullus lanatus HOM05D002668 ORTHO05D003295 6.1e-07 60.1 277 23.5
Actinidia36111 Actinidia chinensis HOM05D002668 ORTHO05D003295 7.9e-07 59.7 274 24.1
MELO3C009987.2 Cucumis melo HOM05D002668 ORTHO05D003295 1.0e-06 59.3 277 22.7
Glyma.19G063300 Glycine max HOM05D002668 ORTHO05D003295 1.0e-06 59.3 282 22.3
CDE06G0738 Ceratophyllum demersum HOM05D002668 ORTHO05D003295 2.3e-06 58.2 276 22.5
SGA_v2.0_scaffold224G42983 Striga asiatica HOM05D002668 ORTHO05D003295 2.3e-06 58.2 281 21.7
Rhsim10G0018000 Rhododendron simsii HOM05D002668 ORTHO05D003295 3.0e-06 57.8 271 22.9
vmacro05859 Vaccinium macrocarpon HOM05D002668 ORTHO05D003295 3.0e-06 57.8 271 22.9
CsaV3_3G042740 Cucumis sativus L. HOM05D002668 ORTHO05D003295 3.9e-06 57.4 277 22.4
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 3.9e-06 57.4 82 43.9
AUR62035476 Chenopodium quinoa HOM05D002668 ORTHO05D003295 5.1e-06 57.0 277 23.1
Gohir.D10G086800 Gossypium hirsutum HOM05D002668 ORTHO05D003295 5.1e-06 57.0 277 22.0
Gorai.011G095000 Gossypium raimondii HOM05D002668 ORTHO05D003295 5.1e-06 57.0 277 22.0
PSO478G0575 Papaver somniferum HOM05D002668 ORTHO05D003295 5.1e-06 57.0 274 22.3
Cc07_g01790 Coffea canephora HOM05D002668 ORTHO05D003295 6.7e-06 56.6 276 23.9
Lj7A598T51 Lonicera japonica HOM05D002668 ORTHO05D003295 6.7e-06 56.6 275 22.2
PSO017G1194 Papaver somniferum HOM05D002668 ORTHO05D003295 6.7e-06 56.6 276 22.5
Gohir.A10G102600 Gossypium hirsutum HOM05D002668 ORTHO05D003295 8.7e-06 56.2 277 22.0
Thecc.04G016000 Theobroma cacao HOM05D002668 ORTHO05D003295 8.7e-06 56.2 271 23.6


User provided reference genes

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