Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 2.0e-61 238.8 111 100.0
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 7.3e-56 220.3 109 94.5
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 8.7e-49 196.8 109 81.7
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 3.3e-48 194.9 109 80.7
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 9.0e-46 186.8 109 76.1
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 2.0e-45 185.7 109 74.3
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 2.6e-45 185.3 109 78.0
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 2.6e-45 185.3 109 73.4
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 3.8e-44 181.4 109 72.5
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 4.9e-44 181.0 109 73.4
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 2.4e-43 178.7 109 68.8
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 2.4e-43 178.7 109 72.5
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 3.2e-43 178.3 108 73.1
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 3.2e-43 178.3 109 74.3
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 7.1e-43 177.2 109 71.6
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 7.1e-43 177.2 110 73.6
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 1.2e-42 176.4 109 71.6
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 1.2e-42 176.4 109 71.6
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 1.6e-42 176.0 109 70.6
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 2.1e-42 175.6 105 73.3
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 2.1e-42 175.6 110 70.9
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 2.7e-42 175.3 109 71.6
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 3.5e-42 174.9 108 68.5
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 3.5e-42 174.9 108 68.5
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 3.5e-42 174.9 109 70.6
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 3.5e-42 174.9 108 71.3
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 7.8e-42 173.7 109 67.9
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 1.7e-41 172.6 110 70.0
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 2.3e-41 172.2 109 71.6
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 3.0e-41 171.8 108 68.5
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 3.9e-41 171.4 109 68.8
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 5.1e-41 171.0 109 66.1
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 5.1e-41 171.0 110 69.1
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 6.6e-41 170.6 109 65.1
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 6.6e-41 170.6 110 73.6
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 1.5e-40 169.5 109 70.6
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 1.9e-40 169.1 110 68.2
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 3.3e-40 168.3 109 67.9
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 4.3e-40 167.9 109 69.7
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 4.3e-40 167.9 109 70.6
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 4.3e-40 167.9 110 67.3
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 5.6e-40 167.5 109 67.0
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 5.6e-40 167.5 108 68.5
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 5.6e-40 167.5 110 71.8
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 5.6e-40 167.5 110 68.2
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 7.3e-40 167.2 110 67.3
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 7.3e-40 167.2 109 68.8
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 9.6e-40 166.8 110 69.1
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 1.3e-39 166.4 109 68.8
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 1.3e-39 166.4 109 65.1
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 1.6e-39 166.0 109 67.9
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 2.1e-39 165.6 109 68.8
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 2.8e-39 165.2 110 69.1
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 3.6e-39 164.9 109 67.0
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 3.6e-39 164.9 110 70.9
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 3.6e-39 164.9 109 64.2
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 4.8e-39 164.5 109 68.8
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 6.2e-39 164.1 110 67.3
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 6.2e-39 164.1 109 67.0
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 6.2e-39 164.1 109 67.0
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 8.1e-39 163.7 110 64.5
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 8.1e-39 163.7 111 66.7
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 8.1e-39 163.7 109 66.1
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 1.1e-38 163.3 109 67.0
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 1.1e-38 163.3 109 67.0
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 1.1e-38 163.3 109 67.0
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 1.1e-38 163.3 108 63.0
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 1.8e-38 162.5 110 65.5
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 2.4e-38 162.2 110 66.4
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 2.4e-38 162.2 110 66.4
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 2.4e-38 162.2 131 61.1
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 2.4e-38 162.2 110 69.1
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 3.1e-38 161.8 109 63.3
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 4.0e-38 161.4 110 67.3
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 4.0e-38 161.4 112 65.2
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 6.9e-38 160.6 105 67.6
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 6.9e-38 160.6 109 66.1
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 9.0e-38 160.2 110 63.6
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 1.5e-37 159.5 110 64.5
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 1.5e-37 159.5 110 64.5
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 1.5e-37 159.5 110 63.6
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 1.5e-37 159.5 109 67.0
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 3.4e-37 158.3 109 64.2
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 1.3e-36 156.4 110 63.6
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 2.2e-36 155.6 90 77.8
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 2.9e-36 155.2 110 60.9
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 3.8e-36 154.8 109 63.3
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 4.9e-36 154.5 110 63.6
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 4.9e-36 154.5 110 59.1
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 1.4e-35 152.9 110 60.9
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 1.4e-35 152.9 109 63.3
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 1.9e-35 152.5 110 61.8
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 2.7e-34 148.7 110 60.0
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 3.0e-33 145.2 110 63.6
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 5.1e-33 144.4 93 67.7
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 2.5e-32 142.1 109 54.1
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 4.3e-32 141.4 94 71.3
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 4.3e-32 141.4 110 61.8
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 6.4e-28 127.5 82 68.3
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 2.2e-20 102.4 68 69.1
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 2.2e-20 102.4 68 69.1
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 3.3e-16 88.6 62 67.7
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 6.3e-15 84.3 98 39.8
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 6.9e-14 80.9 109 37.6
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 4.5e-13 78.2 42 76.2
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 2.2e-12 75.9 42 73.8
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 3.8e-12 75.1 42 73.8
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 5.0e-12 74.7 41 73.2
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 1.1e-11 73.6 41 70.7
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 3.2e-11 72.0 42 69.0
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 4.6e-10 68.2 42 66.7
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 3.3e-08 62.0 65 50.8
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 3.3e-08 62.0 65 50.8


User provided reference genes

Program Settings