Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.0e-227 791.6 424 100.0
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.5e-221 770.8 457 92.3
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 3.1e-131 472.6 555 53.5
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.8e-129 465.7 539 54.5
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.7e-114 416.4 527 50.5
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 5.0e-113 412.1 592 45.6
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 9.8e-109 397.9 529 48.0
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 3.1e-107 392.9 522 49.0
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 7.7e-106 388.3 561 44.2
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.3e-105 386.7 475 52.8
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 4.7e-103 379.0 543 45.7
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 6.8e-102 375.2 538 42.8
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 1.4e-99 367.5 550 44.0
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.6e-98 364.0 553 43.2
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 2.7e-98 363.2 503 45.5
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.0e-97 361.3 539 45.3
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 9.5e-96 354.8 535 44.5
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 3.1e-94 349.7 537 40.4
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 5.2e-94 349.0 528 42.0
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 3.4e-93 346.3 554 41.3
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 7.5e-93 345.1 552 44.4
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 1.7e-92 344.0 542 40.6
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 3.7e-92 342.8 552 43.8
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 4.9e-92 342.4 539 41.2
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 1.1e-91 341.3 546 43.4
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 1.9e-91 340.5 545 41.8
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 9.2e-91 338.2 541 41.2
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 7.8e-90 335.1 517 42.6
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 4.3e-88 329.3 536 42.9
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 7.3e-88 328.6 526 43.7
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 9.5e-88 328.2 495 43.4
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.6e-87 327.4 541 43.6
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 6.2e-87 325.5 523 43.8
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.1e-86 324.7 537 42.5
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.0e-85 320.5 528 40.5
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 3.4e-85 319.7 528 43.4
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 2.9e-84 316.6 525 41.1
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 8.3e-84 315.1 468 45.5
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 1.2e-82 311.2 522 42.1
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.2e-82 311.2 569 38.0
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.1e-82 310.5 553 40.1
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 7.8e-82 308.5 655 35.7
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.3e-81 307.8 567 39.9
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 2.3e-81 307.0 532 40.6
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 8.6e-81 305.1 531 40.1
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 3.3e-80 303.1 553 41.2
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 1.2e-79 301.2 529 40.5
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.2e-79 301.2 520 39.0
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 3.6e-79 299.7 543 39.4
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 4.0e-78 296.2 531 38.2
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 5.2e-78 295.8 540 40.4
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 8.9e-78 295.0 531 38.0
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.2e-77 294.7 530 42.1
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.2e-77 294.7 540 38.3
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 2.6e-77 293.5 511 40.3
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 3.4e-77 293.1 531 39.7
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 9.9e-77 291.6 572 36.9
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 9.9e-77 291.6 543 38.1
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 9.9e-77 291.6 318 55.0
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.3e-76 291.2 508 39.6
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 2.2e-76 290.4 537 40.0
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 2.2e-76 290.4 508 39.6
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 3.2e-75 286.6 428 46.0
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 5.4e-75 285.8 480 42.1
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 7.1e-75 285.4 544 38.2
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 2.7e-74 283.5 550 38.2
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 6.0e-74 282.3 550 38.4
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 7.8e-74 282.0 500 40.8
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 2.5e-72 276.9 532 40.0
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 1.2e-71 274.6 575 35.3
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 7.6e-69 265.4 426 38.7
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 3.8e-68 263.1 476 42.0
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 3.8e-68 263.1 483 39.1
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 4.2e-67 259.6 562 37.2
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 1.2e-63 248.1 559 35.6
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.6e-63 246.5 559 35.2
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 1.4e-62 244.6 460 39.8
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 2.4e-62 243.8 479 38.2
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 4.0e-62 243.0 404 41.8
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 4.0e-62 243.0 479 36.1
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 9.0e-62 241.9 554 35.2
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.0e-62 241.9 554 35.2
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 2.0e-61 240.7 479 38.4
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 5.8e-61 239.2 476 37.4
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.3e-60 238.0 554 33.9
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 3.2e-59 233.4 478 36.2
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 6.0e-58 229.2 489 36.2
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.3e-57 228.0 478 35.8
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.7e-57 227.6 321 43.0
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 3.9e-57 226.5 530 34.0
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 1.1e-56 224.9 466 36.5
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.5e-56 224.6 479 35.1
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 4.3e-56 223.0 483 35.6
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 5.6e-56 222.6 474 36.9
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 1.6e-55 221.1 474 36.5
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 1.6e-55 221.1 474 36.5
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 1.6e-55 221.1 474 36.5
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 2.1e-55 220.7 474 35.4
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.1e-55 220.7 478 35.6
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.8e-55 219.5 454 40.3
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 8.1e-55 218.8 476 34.5
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 8.1e-55 218.8 484 34.1
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.1e-54 218.4 516 34.3
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 1.8e-54 217.6 483 35.4
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 1.8e-54 217.6 479 34.9
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.3e-54 216.1 523 34.8
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.8e-52 209.9 329 43.2
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 5.4e-51 206.1 472 35.2
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 2.1e-50 204.1 445 36.6
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 4.3e-48 196.4 371 41.0
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 5.6e-48 196.1 555 32.8
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 7.4e-48 195.7 346 38.4
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.6e-48 195.3 445 33.3
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 2.8e-47 193.7 445 32.8
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 6.2e-47 192.6 439 34.4
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 5.3e-46 189.5 441 35.1
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.0e-46 188.7 445 35.1
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.5e-45 186.4 445 35.5
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 7.6e-45 185.7 220 50.5
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 2.7e-42 177.2 554 30.0
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.8e-41 174.5 143 63.6
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.9e-40 171.0 420 37.4
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 4.5e-37 159.8 302 36.1
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 1.0e-36 158.7 444 31.3
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 2.9e-36 157.1 289 39.8
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.6e-34 149.8 424 32.3
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 7.9e-34 149.1 285 40.4
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 5.1e-33 146.4 375 34.1
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-32 145.2 438 32.2
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.6e-31 141.4 390 31.0
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 7.7e-29 132.5 110 58.2
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 2.2e-28 131.0 299 36.1
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.8e-25 119.0 380 31.6
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 8.8e-25 119.0 316 30.4
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 2.5e-24 117.5 98 59.2
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.2e-23 114.4 79 69.6
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 1.1e-22 112.1 120 47.5
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 1.2e-21 108.6 159 40.9
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 3.8e-20 103.6 291 28.9
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 8.8e-17 92.4 134 46.3
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 2.0e-16 91.3 308 33.4
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 9.7e-16 89.0 71 54.9
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 4.8e-15 86.7 76 52.6
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.0e-12 79.0 111 43.2
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 6.1e-10 69.7 282 24.5
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 3.9e-09 67.0 68 52.9


User provided reference genes

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