Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 8.1e-228 793.5 410 100.0
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 2.3e-166 589.3 416 75.7
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 1.5e-144 516.9 403 69.7
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 3.6e-143 512.3 424 66.0
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.0e-137 494.2 380 70.5
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 2.3e-137 493.0 385 66.8
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 1.2e-127 460.7 408 61.0
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 1.7e-124 450.3 412 60.2
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 8.4e-124 448.0 408 61.8
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 3.5e-122 442.6 406 59.6
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 4.6e-122 442.2 408 61.5
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 3.9e-121 439.1 407 60.2
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.5e-120 436.4 411 58.4
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.5e-120 436.4 411 58.2
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 1.6e-119 433.7 408 57.8
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 4.8e-119 432.2 411 57.7
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 8.1e-119 431.4 406 58.9
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 1.1e-118 431.0 440 57.0
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 1.4e-118 430.6 406 57.9
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 2.4e-118 429.9 468 54.7
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 2.4e-118 429.9 411 57.9
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 3.1e-118 429.5 413 56.4
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 4.0e-118 429.1 412 57.8
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 1.5e-117 427.2 406 58.4
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 7.6e-117 424.9 411 57.9
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 3.8e-116 422.5 394 59.6
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 4.9e-116 422.2 404 58.2
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 8.4e-116 421.4 412 56.8
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 8.4e-116 421.4 404 57.9
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.1e-115 421.0 381 61.9
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 2.4e-115 419.9 403 58.3
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 3.2e-115 419.5 408 56.9
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 4.2e-115 419.1 410 57.8
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 7.1e-115 418.3 377 60.5
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 1.6e-114 417.2 371 59.0
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 1.6e-114 417.2 404 57.4
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.1e-114 416.8 390 62.1
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.3e-113 414.1 392 57.1
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 1.2e-109 401.0 414 54.8
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 5.8e-109 398.7 417 53.7
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 6.4e-108 395.2 446 50.2
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 5.4e-107 392.1 381 58.5
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 4.6e-106 389.0 402 56.2
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 2.3e-105 386.7 532 45.1
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 3.9e-105 386.0 415 54.7
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 6.7e-105 385.2 418 55.7
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 1.3e-103 380.9 456 48.9
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 4.8e-103 379.0 415 52.0
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 1.2e-101 374.4 397 53.7
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 1.5e-101 374.0 391 53.2
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 2.0e-101 373.6 475 47.4
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 2.6e-101 373.2 442 49.8
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 2.6e-101 373.2 424 51.2
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 1.7e-100 370.5 429 51.3
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 2.2e-100 370.2 424 51.7
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 6.5e-100 368.6 430 52.1
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 7.1e-99 365.2 397 53.1
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 9.3e-99 364.8 402 52.5
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 1.6e-98 364.0 422 50.7
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 2.7e-98 363.2 418 51.7
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 4.6e-98 362.5 409 53.1
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 6.7e-97 358.6 385 53.8
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 1.5e-96 357.5 411 50.9
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 1.9e-96 357.1 472 46.2
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 6.2e-95 352.1 436 49.5
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.1e-94 351.3 420 49.5
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 1.2e-93 347.8 408 49.8
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 1.2e-93 347.8 403 49.9
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 1.5e-93 347.4 347 57.1
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 2.9e-92 343.2 456 46.3
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 9.3e-91 338.2 424 49.8
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 1.6e-90 337.4 473 45.2
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 2.7e-90 336.7 431 48.3
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 3.0e-89 333.2 421 50.1
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 5.7e-88 328.9 418 47.6
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 5.7e-88 328.9 418 47.6
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 1.6e-87 327.4 429 47.6
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 4.8e-87 325.9 418 47.4
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.8e-86 323.9 422 48.1
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 3.1e-86 323.2 401 48.6
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 4.1e-86 322.8 431 45.5
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 1.2e-85 321.2 432 46.3
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 3.4e-85 319.7 420 46.9
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 3.4e-85 319.7 420 46.9
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 1.7e-84 317.4 429 46.4
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 6.5e-84 315.5 424 46.2
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 4.6e-82 309.3 412 46.6
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 6.7e-81 305.4 322 54.0
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 1.1e-80 304.7 416 45.9
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 1.9e-75 287.3 401 45.1
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 4.2e-75 286.2 330 50.9
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 9.4e-75 285.0 425 43.5
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.1e-70 271.6 188 73.4
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.4e-65 254.6 171 83.0
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 2.6e-64 250.4 213 61.5
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 3.7e-63 246.5 124 98.4
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 8.5e-60 235.3 192 59.9
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 5.7e-56 222.6 263 50.6
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 1.8e-54 217.6 480 35.0
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 1.5e-35 154.8 247 43.3
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 4.7e-34 149.8 139 59.0
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 8.0e-34 149.1 516 30.4
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 1.8e-33 147.9 190 45.3
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 2.3e-33 147.5 120 63.3
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 1.2e-32 145.2 125 59.2
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 5.8e-32 142.9 415 33.7
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 5.8e-32 142.9 415 33.7
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 2.8e-26 124.0 137 54.7
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 5.2e-25 119.8 85 65.9
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 9.2e-22 109.0 70 71.4
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.7e-20 104.8 563 24.7
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 2.2e-15 87.8 78 56.4
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 4.9e-15 86.7 368 26.6
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 8.6e-12 75.9 179 31.3
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 1.5e-11 75.1 75 49.3
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.1e-09 68.9 98 37.8
MD02G1040500 Malus domestica HOM05D006752 ORTHO05D008597 3.1e-09 67.4 81 46.9
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 1.5e-08 65.1 100 42.0
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 3.4e-08 63.9 62 54.8
MD02G1040400 Malus domestica HOM05D006752 ORTHO05D008597 3.8e-07 60.5 66 50.0
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.4e-06 58.5 46 58.7
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.4e-06 58.5 130 33.8
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 2.4e-06 57.8 121 33.9
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 2.4e-06 57.8 135 29.6
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.4e-06 57.8 130 33.8


User provided reference genes

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