Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.3e-276 955.7 457 100.0
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.3e-276 955.7 457 100.0
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 7.2e-251 870.2 457 89.3
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 6.8e-241 837.0 457 87.3
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.9e-236 821.2 444 86.9
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 6.6e-236 820.5 457 83.8
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.1e-234 815.5 457 84.0
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 3.2e-230 801.6 448 84.2
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.6e-229 799.3 438 85.4
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 2.0e-229 798.9 457 82.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.3e-228 796.2 457 80.7
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.7e-228 795.8 457 81.2
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.9e-227 792.3 457 82.9
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 9.5e-227 790.0 460 81.3
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 1.2e-226 789.6 471 79.4
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 6.2e-226 787.3 459 80.8
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 8.1e-226 786.9 457 82.3
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.3e-225 785.4 464 79.5
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 4.0e-225 784.6 457 79.2
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 6.8e-225 783.9 453 81.0
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.5e-224 782.7 457 79.6
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.0e-224 782.3 453 81.5
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 2.9e-223 778.5 457 78.6
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 5.4e-222 774.2 457 78.3
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 9.2e-222 773.5 458 78.6
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.3e-220 769.6 457 77.9
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 3.0e-220 768.5 458 79.5
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 6.6e-220 767.3 457 78.8
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.1e-219 766.5 458 77.9
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.9e-219 765.8 447 79.9
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 4.7e-218 761.1 458 79.7
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.1e-217 760.0 459 78.6
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 6.8e-217 757.3 458 76.9
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 2.0e-216 755.7 461 77.2
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 3.4e-216 755.0 458 77.1
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.4e-215 750.4 457 79.6
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 3.2e-214 748.4 457 77.9
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 3.0e-212 741.9 457 75.1
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 3.0e-212 741.9 467 76.4
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 5.1e-212 741.1 457 77.2
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 5.1e-212 741.1 464 76.1
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 2.1e-210 735.7 446 77.6
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 2.4e-209 732.3 455 74.9
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 4.0e-209 731.5 451 75.8
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 5.2e-209 731.1 450 76.2
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 4.4e-208 728.0 426 80.8
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 5.8e-208 727.6 455 74.5
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 7.6e-208 727.2 458 74.7
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 9.9e-208 726.9 458 74.7
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.4e-206 723.0 458 74.2
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.4e-206 723.0 433 77.4
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 4.2e-206 721.5 439 77.2
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.1e-205 719.2 457 74.6
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 3.5e-205 718.4 457 73.1
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.8e-205 717.2 426 78.4
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.7e-204 716.1 466 73.6
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 3.0e-204 715.3 429 78.1
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 8.7e-204 713.8 430 77.9
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 2.5e-203 712.2 429 78.1
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.3e-203 711.8 434 77.0
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 9.6e-203 710.3 394 83.8
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.6e-202 709.5 426 77.5
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 3.6e-202 708.4 426 77.7
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.8e-202 708.0 454 74.0
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.8e-202 708.0 467 73.0
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.8e-201 706.1 464 72.6
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.4e-201 705.7 455 74.1
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 5.3e-201 704.5 473 71.2
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.3e-199 699.9 452 73.5
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.9e-198 696.0 457 71.6
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 7.1e-198 694.1 457 70.9
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.2e-197 693.3 457 71.8
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 2.3e-196 689.1 438 74.9
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 3.0e-196 688.7 451 72.9
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.5e-195 686.4 453 69.8
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.6e-194 682.9 408 78.4
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 2.6e-192 675.6 467 70.0
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 2.6e-192 675.6 493 66.5
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 3.8e-191 671.8 489 68.7
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 4.2e-190 668.3 464 67.5
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 2.1e-189 666.0 473 66.4
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 3.3e-187 658.7 457 65.0
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 9.6e-187 657.1 458 65.9
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.6e-186 656.4 459 66.0
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.1e-185 653.7 384 80.7
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.8e-185 652.9 458 65.1
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.1e-185 652.1 473 69.8
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 6.9e-185 651.0 458 66.2
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.5e-184 649.8 459 65.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 5.8e-184 647.9 460 66.7
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.3e-183 646.7 461 64.9
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.7e-183 646.4 460 65.4
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.7e-183 646.4 461 64.9
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 8.4e-183 644.0 459 64.5
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.4e-182 643.3 368 80.4
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 7.1e-182 641.0 461 64.4
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 7.1e-182 641.0 461 64.4
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.6e-181 639.8 395 75.4
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 2.7e-181 639.0 461 67.9
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 7.9e-181 637.5 454 66.3
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 3.9e-180 635.2 461 64.6
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 4.8e-178 628.2 462 67.7
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.5e-176 623.2 380 78.4
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.4e-174 616.7 443 69.1
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.1e-171 607.1 469 60.6
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 4.3e-171 605.1 420 71.0
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 7.4e-171 604.4 534 59.0
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 2.2e-170 602.8 449 63.3
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 2.2e-167 592.8 489 59.3
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.1e-163 580.5 403 66.7
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.0e-159 567.4 425 62.8
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.7e-157 559.3 433 60.0
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.7e-154 550.1 436 60.6
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 6.3e-154 548.1 435 57.7
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 3.5e-152 542.3 436 57.3
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.8e-151 538.9 351 73.5
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 7.2e-142 508.1 456 60.5
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 3.7e-138 495.7 477 54.3
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 5.4e-137 491.9 426 57.5
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.5e-134 483.0 465 53.8
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.4e-129 467.2 290 76.2
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 8.6e-127 458.0 332 69.9
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.1e-126 457.6 290 73.1
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.5e-123 447.2 347 61.1
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.5e-123 444.9 347 60.8
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.0e-120 436.8 412 56.6
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 1.2e-117 427.6 273 74.0
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.0e-111 407.9 386 50.3
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 2.4e-97 360.1 212 77.4
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 7.8e-96 355.1 412 43.0
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 6.9e-92 342.0 431 41.3
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 1.1e-86 324.7 277 59.6
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 3.6e-85 319.7 213 73.2
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 5.8e-75 285.8 175 78.9
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 3.2e-57 226.9 230 57.4
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.2e-56 224.9 119 84.0
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 9.7e-54 215.3 194 54.1
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.4e-52 211.5 182 57.1
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.8e-45 186.4 257 44.0
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 4.8e-45 186.4 157 60.5
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.8e-44 184.5 255 43.9
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 8.5e-42 175.6 109 73.4
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.3e-39 167.5 234 39.7
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 5.3e-36 156.4 196 45.4
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 4.5e-35 153.3 85 80.0
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 1.7e-34 151.4 94 76.6
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.4e-31 141.7 255 37.6
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 4.5e-27 126.7 71 77.5
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.5e-22 111.7 62 79.0
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.0e-22 111.3 85 60.0
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 8.3e-21 105.9 129 43.4
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-19 102.1 70 71.4
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 1.8e-15 88.2 64 73.4
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 6.8e-15 86.3 80 62.5
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.6e-10 69.3 42 66.7
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.5e-09 67.8 36 86.1
Ah.02g112160 Amaranthus hybridus HOM05D015883 ORTHO05D005553 2.0e-06 58.2 42 71.4


User provided reference genes

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