Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.8e-31 138.7 70 100.0
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 9.4e-17 89.7 55 85.5
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 4.7e-16 87.4 56 80.4
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 6.1e-16 87.0 56 80.4
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 8.0e-16 86.7 60 73.3
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 8.0e-16 86.7 55 80.0
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 8.0e-16 86.7 54 83.3
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.0e-15 86.3 55 80.0
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.8e-15 85.5 55 78.2
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.8e-15 85.5 55 80.0
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 2.3e-15 85.1 55 78.2
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.3e-15 85.1 55 81.8
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 3.0e-15 84.7 55 80.0
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 3.0e-15 84.7 55 78.2
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 5.2e-15 84.0 55 76.4
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 6.7e-15 83.6 55 76.4
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 6.7e-15 83.6 55 76.4
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 6.7e-15 83.6 55 78.2
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 6.7e-15 83.6 55 74.5
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 8.8e-15 83.2 55 76.4
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 8.8e-15 83.2 50 80.0
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 8.8e-15 83.2 50 80.0
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 8.8e-15 83.2 55 76.4
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.1e-14 82.8 50 80.0
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.1e-14 82.8 50 80.0
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.1e-14 82.8 50 80.0
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.5e-14 82.4 55 76.4
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.5e-14 82.4 54 77.8
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 2.0e-14 82.0 55 72.7
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.3e-14 81.3 55 76.4
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 4.4e-14 80.9 50 80.0
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 4.4e-14 80.9 50 80.0
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.4e-14 80.9 52 76.9
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.4e-14 80.9 52 76.9
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 5.7e-14 80.5 50 78.0
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 5.7e-14 80.5 50 78.0
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 5.7e-14 80.5 55 72.7
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 5.7e-14 80.5 55 72.7
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 7.4e-14 80.1 55 72.7
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 7.4e-14 80.1 55 70.9
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 7.4e-14 80.1 50 80.0
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 7.4e-14 80.1 55 74.5
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 9.7e-14 79.7 50 78.0
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 9.7e-14 79.7 55 70.9
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 9.7e-14 79.7 55 72.7
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 1.3e-13 79.3 55 72.7
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 1.7e-13 79.0 50 78.0
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.7e-13 79.0 50 78.0
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 1.7e-13 79.0 50 78.0
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 2.2e-13 78.6 55 72.7
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 2.2e-13 78.6 50 76.0
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.2e-13 78.6 50 76.0
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.2e-13 78.6 50 76.0
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 2.2e-13 78.6 54 70.4
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 2.2e-13 78.6 55 72.7
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 2.2e-13 78.6 55 76.4
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 2.2e-13 78.6 55 72.7
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 2.8e-13 78.2 55 65.5
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 3.7e-13 77.8 55 69.1
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 4.8e-13 77.4 55 70.9
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 4.8e-13 77.4 55 70.9
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 6.3e-13 77.0 55 70.9
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 6.3e-13 77.0 54 74.1
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 1.1e-12 76.3 50 72.0
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.1e-12 76.3 50 72.0
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.1e-12 76.3 55 67.3
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.8e-12 75.5 55 67.3
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.8e-12 75.5 55 70.9
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.8e-12 75.5 55 70.9
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.8e-12 75.5 55 69.1
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 2.4e-12 75.1 55 69.1
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 3.1e-12 74.7 50 70.0
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 4.1e-12 74.3 55 67.3
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 4.1e-12 74.3 55 67.3
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.1e-12 74.3 55 65.5
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 4.1e-12 74.3 50 74.0
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 5.3e-12 73.9 50 70.0
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 5.3e-12 73.9 54 66.7
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 7.0e-12 73.6 55 65.5
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 9.1e-12 73.2 56 67.9
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 9.1e-12 73.2 55 69.1
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 1.2e-11 72.8 55 65.5
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 1.2e-11 72.8 55 69.1
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.2e-11 72.8 55 67.3
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 1.2e-11 72.8 55 63.6
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 1.6e-11 72.4 50 70.0
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 2.0e-11 72.0 55 63.6
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 3.5e-11 71.2 50 70.0
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 4.5e-11 70.9 53 66.0
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 3.8e-10 67.8 50 70.0
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.8e-10 67.8 55 69.1
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 8.5e-10 66.6 55 63.6
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.1e-09 66.2 58 55.2
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.5e-09 65.1 55 58.2
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 7.2e-09 63.5 47 68.1
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 9.4e-09 63.2 54 55.6
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 9.4e-09 63.2 54 55.6
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 9.4e-09 63.2 55 58.2
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.2e-08 62.8 55 52.7
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.2e-08 62.8 55 52.7
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.2e-08 62.8 55 52.7
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 1.6e-08 62.4 55 56.4
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 2.1e-08 62.0 63 52.4
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.7e-08 61.6 55 56.4
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.7e-08 61.6 55 58.2
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.7e-08 61.6 55 58.2
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 3.6e-08 61.2 55 52.7
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 3.0e-07 58.2 55 56.4
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 5.2e-07 57.4 38 73.7
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 1.2e-06 56.2 38 68.4
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.6e-06 55.1 50 56.0
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.6e-06 55.1 55 50.9
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.3e-06 54.7 50 56.0


User provided reference genes

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