Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021243 Camellia sinensis var. sinensis HOM05D000320 ORTHO05D000532 9.6e-256 886.3 448 100.0
Actinidia11393 Actinidia chinensis HOM05D000320 ORTHO05D000532 2.2e-58 230.7 392 42.9
Actinidia39952 Actinidia chinensis HOM05D000320 ORTHO05D000532 1.1e-57 228.4 394 41.4
vmacro15504 Vaccinium macrocarpon HOM05D000320 ORTHO05D000532 3.2e-57 226.9 396 41.4
Rhsim02G0053300 Rhododendron simsii HOM05D000320 ORTHO05D000532 1.5e-54 218.0 399 42.1
Dinv29559 Davidia involucrata HOM05D000320 ORTHO05D000532 1.1e-38 165.2 401 35.7
TAR365G0258 Trochodendron aralioides HOM05D000320 ORTHO05D000532 9.9e-35 152.1 380 33.9
Hma1.2p1_1499F.1_g287240 Hydrangea macrophylla HOM05D000320 ORTHO05D000532 3.7e-34 150.2 354 36.2
TAR636G2746 Trochodendron aralioides HOM05D000320 ORTHO05D000532 2.1e-32 144.4 420 31.7
Lj6C612G2 Lonicera japonica HOM05D000320 ORTHO05D000532 4.3e-30 136.7 402 33.1
Haze_11566 Corylus avellana HOM05D000320 ORTHO05D000532 4.0e-28 130.2 405 33.3
Oeu016705.1 Olea europaea HOM05D000320 ORTHO05D000532 4.9e-26 123.2 412 32.0
Prupe.1G061200 Prunus persica HOM05D000320 ORTHO05D000532 8.4e-26 122.5 401 31.9
CiPaw.01G125800 Carya illinoinensis HOM05D000320 ORTHO05D000532 1.9e-25 121.3 401 30.9
QL06p023349 Quercus lobata HOM05D000320 ORTHO05D000532 7.1e-25 119.4 404 31.2
Thecc.04G210900 Theobroma cacao HOM05D000320 ORTHO05D000532 1.2e-24 118.6 390 31.3
Atru.chr4.1780 Acer truncatum HOM05D000320 ORTHO05D000532 3.5e-24 117.1 399 32.6
Nitab4.5_0005223g0040 Nicotiana tabacum HOM05D000320 ORTHO05D000532 1.3e-23 115.2 385 32.2
Ciclev10006663m.g Citrus clementina HOM05D000320 ORTHO05D000532 3.0e-23 114.0 407 30.0
PGSC0003DMG400029617 Solanum tuberosum HOM05D000320 ORTHO05D000532 1.1e-22 112.1 448 28.3
Nn3g19899 Nelumbo nucifera HOM05D000320 ORTHO05D000532 1.9e-22 111.3 395 28.6
Solyc09g091460.3 Solanum lycopersicum HOM05D000320 ORTHO05D000532 1.9e-22 111.3 448 27.9
CAN.G500.90 Capsicum annuum HOM05D000320 ORTHO05D000532 2.5e-22 110.9 418 28.2
Nitab4.5_0002284g0050 Nicotiana tabacum HOM05D000320 ORTHO05D000532 3.3e-22 110.5 393 29.5
Sopen09g034390 Solanum pennellii HOM05D000320 ORTHO05D000532 2.8e-21 107.5 448 27.7
Potri.003G176100 Populus trichocarpa HOM05D000320 ORTHO05D000532 2.6e-19 100.9 364 29.7
Manes.03G150500 Manihot esculenta HOM05D000320 ORTHO05D000532 2.9e-18 97.4 156 43.6
Potri.001G052000 Populus trichocarpa HOM05D000320 ORTHO05D000532 8.4e-18 95.9 399 28.6
MD13G1231300 Malus domestica HOM05D000320 ORTHO05D000532 1.9e-17 94.7 397 29.0
Peaxi162Scf00047g01235 Petunia axillaris HOM05D000320 ORTHO05D000532 3.2e-17 94.0 426 28.6
RcHm_v2.0_Chr4g0396991 Rosa chinensis HOM05D000320 ORTHO05D000532 3.2e-17 94.0 117 51.3
ClCG05G003560 Citrullus lanatus HOM05D000320 ORTHO05D000532 5.4e-17 93.2 149 44.3
Cc03_g07260 Coffea canephora HOM05D000320 ORTHO05D000532 1.2e-16 92.0 413 31.2
Sed0016566 Sechium edule HOM05D000320 ORTHO05D000532 3.5e-16 90.5 140 45.0
Sed0020766 Sechium edule HOM05D000320 ORTHO05D000532 3.5e-16 90.5 148 42.6
Sabra01G0036600 Salix brachista HOM05D000320 ORTHO05D000532 1.0e-15 89.0 400 27.8
Duzib151G0546 Durio zibethinus HOM05D000320 ORTHO05D000532 3.0e-15 87.4 391 28.4
MD16G1235800 Malus domestica HOM05D000320 ORTHO05D000532 5.1e-15 86.7 399 28.6
Aqoxy2G03790 Aquilegia oxysepala HOM05D000320 ORTHO05D000532 1.5e-14 85.1 185 36.2
Cfa002546 Carpinus fangiana HOM05D000320 ORTHO05D000532 3.3e-14 84.0 198 36.9
MELO3C006335.2 Cucumis melo HOM05D000320 ORTHO05D000532 3.3e-14 84.0 149 43.6
CsaV3_3G011250 Cucumis sativus L. HOM05D000320 ORTHO05D000532 3.3e-14 84.0 110 49.1
Dinv19223 Davidia involucrata HOM05D000320 ORTHO05D000532 3.3e-14 84.0 145 42.8
MBI07_g22387_MAGBIO Magnolia biondii HOM05D000320 ORTHO05D000532 4.3e-14 83.6 87 55.2
COL.COLO4_04686 Corchorus olitorius HOM05D000320 ORTHO05D000532 5.6e-14 83.2 163 42.3
FAN17G2273 Fragaria x ananassa HOM05D000320 ORTHO05D000532 7.3e-14 82.8 150 42.7
ATR0787G080 Amborella trichopoda HOM05D000320 ORTHO05D000532 1.6e-13 81.6 111 49.5
FAN22G0485 Fragaria x ananassa HOM05D000320 ORTHO05D000532 2.1e-13 81.3 150 43.3
MD10G1168800 Malus domestica HOM05D000320 ORTHO05D000532 2.1e-13 81.3 144 36.1
MD05G1179200 Malus domestica HOM05D000320 ORTHO05D000532 3.6e-13 80.5 185 35.7
Sabra03G0129000 Salix brachista HOM05D000320 ORTHO05D000532 3.6e-13 80.5 363 27.5
MSTRG.21947 Avicennia marina HOM05D000320 ORTHO05D000532 4.8e-13 80.1 417 28.3
TWI09G0215 Tripterygium wilfordii HOM05D000320 ORTHO05D000532 4.8e-13 80.1 152 34.9
CSS0012645 Camellia sinensis var. sinensis HOM05D000320 ORTHO05D000532 6.2e-13 79.7 185 36.2
CSS0016887 Camellia sinensis var. sinensis HOM05D000320 ORTHO05D000532 6.2e-13 79.7 185 36.2
Duzib133G0780 Durio zibethinus HOM05D000320 ORTHO05D000532 8.1e-13 79.3 159 39.0
FvH4_4g05890 Fragaria vesca HOM05D000320 ORTHO05D000532 1.1e-12 79.0 150 41.3
CiPaw.04G107100 Carya illinoinensis HOM05D000320 ORTHO05D000532 4.0e-12 77.0 338 29.9
Ciclev10018522m.g Citrus clementina HOM05D000320 ORTHO05D000532 4.0e-12 77.0 145 38.6
Haze_24770 Corylus avellana HOM05D000320 ORTHO05D000532 4.0e-12 77.0 198 36.4
Prupe.8G206500 Prunus persica HOM05D000320 ORTHO05D000532 4.0e-12 77.0 145 37.2
Sc17g0002540 Simmondsia chinensis HOM05D000320 ORTHO05D000532 4.0e-12 77.0 96 44.8
GSVIVG01029055001 Vitis vinifera HOM05D000320 ORTHO05D000532 4.0e-12 77.0 93 52.7
FAN07G1938 Fragaria x ananassa HOM05D000320 ORTHO05D000532 5.3e-12 76.6 150 40.7
FAN12G1792 Fragaria x ananassa HOM05D000320 ORTHO05D000532 2.0e-11 74.7 147 40.8
MBI10_g03398_MAGBIO Magnolia biondii HOM05D000320 ORTHO05D000532 2.0e-11 74.7 119 42.0
Ciclev10006570m.g Citrus clementina HOM05D000320 ORTHO05D000532 2.6e-11 74.3 100 48.0
Duzib138G0264 Durio zibethinus HOM05D000320 ORTHO05D000532 7.6e-11 72.8 159 37.1
Atru.chr5.1870 Acer truncatum HOM05D000320 ORTHO05D000532 1.7e-10 71.6 162 34.6
DCAR_009475 Daucus carota HOM05D000320 ORTHO05D000532 1.7e-10 71.6 168 35.7
TWI36G1778 Tripterygium wilfordii HOM05D000320 ORTHO05D000532 2.9e-10 70.9 172 34.3
FAN15G1734 Fragaria x ananassa HOM05D000879 ORTHO05D002043 6.4e-10 69.7 145 33.8
FAN15G3488 Fragaria x ananassa HOM05D000320 ORTHO05D000532 6.4e-10 69.7 145 33.8
Lalb_Chr12g0209621 Lupinus albus HOM05D000320 ORTHO05D000532 8.4e-10 69.3 113 38.9
Migut.G00625 Erythranthe guttata HOM05D000320 ORTHO05D000532 1.4e-09 68.6 109 42.2
Gohir.A08G193900 Gossypium hirsutum HOM05D000320 ORTHO05D000532 1.4e-09 68.6 251 29.5
MELO3C029573.2 Cucumis melo HOM05D001534 ORTHO05D003503 2.4e-09 67.8 95 48.4
FAN27G1908 Fragaria x ananassa HOM05D000320 ORTHO05D000532 2.4e-09 67.8 145 33.8
Thecc.01G229000 Theobroma cacao HOM05D000320 ORTHO05D000532 2.4e-09 67.8 143 37.8
FvH4_2g19501 Fragaria vesca HOM05D000320 ORTHO05D000532 5.4e-09 66.6 204 32.4
Gorai.004G225000 Gossypium raimondii HOM05D000320 ORTHO05D000532 7.1e-09 66.2 196 32.1
Lj1g0010320 Lotus japonicus HOM05D000320 ORTHO05D000532 7.1e-09 66.2 110 39.1
RcHm_v2.0_Chr6g0285191 Rosa chinensis HOM05D000320 ORTHO05D000532 9.3e-09 65.9 145 33.1
Gohir.A07G155400 Gossypium hirsutum HOM05D000320 ORTHO05D000532 1.2e-08 65.5 82 50.0
Gohir.D08G211700 Gossypium hirsutum HOM05D000320 ORTHO05D000532 1.2e-08 65.5 196 32.1
Gorai.001G185100 Gossypium raimondii HOM05D000320 ORTHO05D000532 1.2e-08 65.5 82 50.0
Gohir.D02G032000 Gossypium hirsutum HOM05D000320 ORTHO05D000532 2.1e-08 64.7 173 31.2
SalBow3G4505 Salvia bowleyana HOM05D000320 ORTHO05D000532 2.1e-08 64.7 401 26.2
Ca_16587_v3 Cicer arietinum L. HOM05D000320 ORTHO05D000532 4.6e-08 63.5 105 44.8
Gorai.005G035500 Gossypium raimondii HOM05D000320 ORTHO05D000532 6.0e-08 63.2 172 31.4
Lalb_Chr07g0193981 Lupinus albus HOM05D000320 ORTHO05D000532 6.0e-08 63.2 332 27.1
Psat1g014960 Pisum sativum HOM05D000320 ORTHO05D000532 1.0e-07 62.4 105 41.0
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 1.3e-07 62.0 297 28.3
Thhalv10006649m.g Eutrema salsugineum HOM05D000320 ORTHO05D000532 1.8e-07 61.6 102 40.2
Gohir.D07G161700 Gossypium hirsutum HOM05D000320 ORTHO05D000532 1.8e-07 61.6 82 48.8
PSO017G0434 Papaver somniferum HOM05D000320 ORTHO05D000532 1.8e-07 61.6 145 36.6
COL.COLO4_20316 Corchorus olitorius HOM05D000320 ORTHO05D000532 2.3e-07 61.2 368 24.5
Aa31LG1G20180 Aethionema arabicum HOM05D000320 ORTHO05D000532 3.0e-07 60.8 101 39.6
Gohir.A02G024800 Gossypium hirsutum HOM05D000320 ORTHO05D000532 3.0e-07 60.8 172 30.8
PGR142G1875 Punica granatum HOM05D000320 ORTHO05D000532 5.1e-07 60.1 89 47.2
THA.LOC104801048 Tarenaya hassleriana HOM05D000320 ORTHO05D000532 5.1e-07 60.1 160 33.1
Actinidia30093 Actinidia chinensis HOM05D000320 ORTHO05D000532 6.7e-07 59.7 145 33.1
Medtr6g033130 Medicago truncatula HOM05D000320 ORTHO05D000532 8.7e-07 59.3 152 34.2
PSO063G4153 Papaver somniferum HOM05D000320 ORTHO05D000532 8.7e-07 59.3 145 35.9
Carub.0001s0395 Capsella rubella HOM05D000320 ORTHO05D000532 1.9e-06 58.2 102 38.2
Lsat_1_v5_gn_1_72440 Lactuca sativa HOM05D000320 ORTHO05D000532 5.6e-06 56.6 176 29.0


User provided reference genes

Program Settings