Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.6e-49 199.5 136 100.0
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.9e-29 132.9 144 56.9
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 3.0e-27 125.6 150 62.0
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 9.7e-26 120.6 137 61.3
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 3.4e-23 112.1 160 47.5
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.7e-20 102.4 138 47.1
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 3.6e-20 102.1 140 50.0
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 4.6e-20 101.7 144 52.8
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 6.1e-20 101.3 160 43.8
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 2.3e-19 99.4 140 48.6
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 3.0e-19 99.0 134 65.7
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 5.1e-19 98.2 134 47.8
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 6.7e-19 97.8 180 41.1
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 1.1e-18 97.1 140 47.9
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.9e-18 96.3 147 44.9
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.5e-18 95.9 137 48.9
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 3.3e-18 95.5 154 42.2
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.7e-18 94.7 146 46.6
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 5.7e-18 94.7 146 46.6
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 5.7e-18 94.7 156 42.9
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 5.7e-18 94.7 142 45.8
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 7.4e-18 94.4 147 46.9
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 9.7e-18 94.0 134 47.8
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 1.3e-17 93.6 133 48.9
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.7e-17 93.2 155 41.3
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 2.2e-17 92.8 145 46.2
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 2.2e-17 92.8 133 45.9
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.2e-17 92.8 137 50.4
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 3.7e-17 92.0 135 45.2
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 3.7e-17 92.0 134 47.8
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 4.8e-17 91.7 143 55.9
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 4.8e-17 91.7 135 64.4
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 4.8e-17 91.7 141 46.1
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 6.3e-17 91.3 144 43.8
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 8.2e-17 90.9 136 53.7
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 1.1e-16 90.5 133 44.4
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.4e-16 90.1 136 52.2
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.8e-16 89.7 134 57.5
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.4e-16 89.4 165 38.2
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 4.1e-16 88.6 154 41.6
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 4.1e-16 88.6 154 41.6
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 5.3e-16 88.2 147 42.2
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 9.1e-16 87.4 134 64.2
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.2e-15 87.0 142 41.5
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 1.5e-15 86.7 133 43.6
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.0e-15 86.3 160 42.5
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 2.0e-15 86.3 144 42.4
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 2.6e-15 85.9 151 42.4
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 2.6e-15 85.9 143 41.3
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 3.4e-15 85.5 143 42.0
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 4.5e-15 85.1 136 41.9
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 4.5e-15 85.1 143 40.6
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 5.9e-15 84.7 143 52.4
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 7.7e-15 84.3 140 40.0
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.0e-14 84.0 138 43.5
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 3.8e-14 82.0 159 36.5
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 5.0e-14 81.6 163 42.3
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 6.5e-14 81.3 163 54.6
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 8.5e-14 80.9 164 36.0
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.1e-13 80.5 141 40.4
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.9e-13 79.7 138 42.0
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 1.9e-13 79.7 141 43.3
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.5e-13 79.3 156 51.3
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 3.2e-13 79.0 173 45.1
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.2e-13 79.0 138 42.0
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 3.2e-13 79.0 132 42.4
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 3.2e-13 79.0 170 36.5
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 3.2e-13 79.0 163 50.9
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 4.2e-13 78.6 138 41.3
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 5.5e-13 78.2 133 43.6
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 7.2e-13 77.8 135 42.2
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 9.4e-13 77.4 166 36.1
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 1.2e-12 77.0 136 39.0
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 1.2e-12 77.0 148 37.8
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.6e-12 76.6 173 35.8
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 1.6e-12 76.6 144 43.1
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 1.6e-12 76.6 167 34.1
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 1.6e-12 76.6 139 41.0
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 2.1e-12 76.3 148 38.5
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 2.1e-12 76.3 156 46.2
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 2.1e-12 76.3 131 40.5
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.7e-12 75.9 138 39.9
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 3.6e-12 75.5 143 39.2
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 4.7e-12 75.1 149 36.9
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 7.9e-12 74.3 135 37.8
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 7.9e-12 74.3 135 37.8
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 7.9e-12 74.3 136 37.5
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 1.0e-11 73.9 174 35.6
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 1.4e-11 73.6 131 39.7
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 1.4e-11 73.6 131 39.7
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 1.4e-11 73.6 145 41.4
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 1.8e-11 73.2 137 37.2
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 1.8e-11 73.2 149 37.6
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 3.9e-11 72.0 138 39.1
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 3.9e-11 72.0 145 55.2
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 5.1e-11 71.6 155 33.5
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 6.7e-11 71.2 148 38.5
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 6.7e-11 71.2 172 39.5
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 8.8e-11 70.9 146 39.7
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 3.3e-10 68.9 161 48.4
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 5.7e-10 68.2 137 35.0
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 5.7e-10 68.2 145 40.0
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 7.4e-10 67.8 173 35.8
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 7.4e-10 67.8 144 45.1
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 9.7e-10 67.4 142 36.6
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 1.3e-09 67.0 144 36.1
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.3e-09 67.0 142 38.0
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 4.8e-09 65.1 165 32.7
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 3.1e-08 62.4 135 36.3
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 7.0e-08 61.2 150 32.0
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 1.2e-07 60.5 75 49.3
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 1.2e-07 60.5 147 32.0
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 1.5e-07 60.1 158 32.9
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.6e-07 59.3 147 32.7
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 4.5e-07 58.5 43 65.1
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 5.9e-07 58.2 66 45.5
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 2.2e-06 56.2 137 35.0
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 6.5e-06 54.7 66 45.5
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 8.5e-06 54.3 79 41.8


User provided reference genes

Program Settings