Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021193 Camellia sinensis var. sinensis HOM05D002036 ORTHO05D001913 4.7e-294 1013.8 526 100.0
CSS0027078 Camellia sinensis var. sinensis HOM05D002036 ORTHO05D001913 4.9e-102 375.9 562 46.1
Dinv31404 Davidia involucrata HOM05D002036 ORTHO05D001913 4.2e-93 346.3 706 38.0
Dinv25954 Davidia involucrata HOM05D002036 ORTHO05D001913 4.1e-80 303.1 631 37.7
Actinidia34342 Actinidia chinensis HOM05D002036 ORTHO05D001913 1.2e-71 275.0 614 37.0
Actinidia02984 Actinidia chinensis HOM05D002036 ORTHO05D001913 5.9e-71 272.7 466 42.9
Rhsim03G0127500 Rhododendron simsii HOM05D002036 ORTHO05D001913 3.7e-65 253.4 616 35.1
Actinidia25066 Actinidia chinensis HOM05D002036 ORTHO05D001913 4.4e-50 203.4 422 38.2
QL08p057863 Quercus lobata HOM05D002036 ORTHO05D001913 3.1e-48 197.2 461 34.3
TAR157G0003 Trochodendron aralioides HOM05D002036 ORTHO05D001913 1.7e-46 191.4 640 29.4
TAR633G1128 Trochodendron aralioides HOM05D002036 ORTHO05D001913 4.7e-44 183.3 649 29.6
Lj8C90T10 Lonicera japonica HOM05D002036 ORTHO05D001913 8.0e-44 182.6 366 39.3
Hma1.2p1_0402F.1_g145150 Hydrangea macrophylla HOM05D002036 ORTHO05D001913 7.0e-40 169.5 390 36.2
vmacro07139 Vaccinium macrocarpon HOM05D002036 ORTHO05D001913 7.3e-37 159.5 321 36.4
Aqoxy4G03055 Aquilegia oxysepala HOM05D002036 ORTHO05D001913 2.8e-36 157.5 490 31.0
Nn2g12861 Nelumbo nucifera HOM05D002036 ORTHO05D001913 4.0e-35 153.7 497 31.6
Haze_16989 Corylus avellana HOM05D002036 ORTHO05D001913 1.3e-33 148.7 601 28.3
Potri.010G211700 Populus trichocarpa HOM05D002036 ORTHO05D001913 1.7e-33 148.3 494 29.6
Cfa001544 Carpinus fangiana HOM05D002036 ORTHO05D001913 3.7e-33 147.1 488 30.3
Dinv37219 Davidia involucrata HOM05D002036 ORTHO05D001913 2.5e-29 134.4 463 30.9
Sabra10G0163700 Salix brachista HOM05D002036 ORTHO05D001913 2.5e-29 134.4 477 30.0
CiPaw.01G281500 Carya illinoinensis HOM05D002036 ORTHO05D001913 2.8e-28 131.0 432 30.6
GSVIVG01025600001 Vitis vinifera HOM05D002036 ORTHO05D001913 3.6e-28 130.6 605 26.8
Haze_20717 Corylus avellana HOM05D002036 ORTHO05D001913 4.0e-27 127.1 486 29.4
Duzib106G0638 Durio zibethinus HOM05D002036 ORTHO05D001913 4.0e-27 127.1 414 34.1
Cfa017446 Carpinus fangiana HOM05D002036 ORTHO05D001913 5.8e-26 123.2 484 27.5
QL07p046595 Quercus lobata HOM05D002036 ORTHO05D001913 9.8e-26 122.5 572 26.6
Nitab4.5_0004055g0060 Nicotiana tabacum HOM05D002036 ORTHO05D001913 1.3e-25 122.1 390 32.1
Duzib114G0766 Durio zibethinus HOM05D002036 ORTHO05D001913 2.2e-25 121.3 354 33.3
PSO206G0030 Papaver somniferum HOM05D002036 ORTHO05D001913 6.4e-25 119.8 485 27.0
Atru.chr8.2482 Acer truncatum HOM05D002036 ORTHO05D001913 1.9e-24 118.2 487 27.9
Dinv35653 Davidia involucrata HOM05D002036 ORTHO05D001913 1.9e-24 118.2 463 28.7
Prupe.2G227000 Prunus persica HOM05D002036 ORTHO05D001913 5.4e-24 116.7 424 31.1
COL.COLO4_10915 Corchorus olitorius HOM05D002036 ORTHO05D001913 9.2e-24 115.9 438 31.5
Rhsim05G0186600 Rhododendron simsii HOM05D002036 ORTHO05D001913 2.7e-23 114.4 507 26.8
FAN14G3656 Fragaria x ananassa HOM05D002036 ORTHO05D001913 6.0e-23 113.2 499 27.5
Prupe.6G247900 Prunus persica HOM05D002036 ORTHO05D001913 6.0e-23 113.2 500 26.2
Ciclev10030779m.g Citrus clementina HOM05D002036 ORTHO05D001913 7.8e-23 112.8 366 31.7
Nitab4.5_0000914g0260 Nicotiana tabacum HOM05D002036 ORTHO05D001913 1.0e-22 112.5 434 30.6
Thecc.10G058600 Theobroma cacao HOM05D002036 ORTHO05D001913 1.0e-22 112.5 485 29.1
FvH4_6g14620 Fragaria vesca HOM05D002036 ORTHO05D001913 3.0e-22 110.9 499 27.1
Nn2g10515 Nelumbo nucifera HOM05D002036 ORTHO05D001913 3.0e-22 110.9 641 25.7
RcHm_v2.0_Chr3g0467721 Rosa chinensis HOM05D002036 ORTHO05D001913 6.6e-22 109.8 609 25.1
GSVIVG01005967001 Vitis vinifera HOM05D002036 ORTHO05D001913 1.1e-21 109.0 374 29.4
PSO339G0404 Papaver somniferum HOM05D002036 ORTHO05D001913 1.5e-21 108.6 485 26.2
FAN05G4012 Fragaria x ananassa HOM05D002036 ORTHO05D001913 1.9e-21 108.2 488 28.1
Gohir.D10G219400 Gossypium hirsutum HOM05D002036 ORTHO05D001913 1.9e-21 108.2 577 28.1
MD12G1134400 Malus domestica HOM05D002036 ORTHO05D001913 1.9e-21 108.2 480 27.9
FAN09G1592 Fragaria x ananassa HOM05D002036 ORTHO05D001913 3.3e-21 107.5 499 26.7
FAN02G2099 Fragaria x ananassa HOM05D002036 ORTHO05D001913 4.3e-21 107.1 499 26.7
Manes.07G109400 Manihot esculenta HOM05D002036 ORTHO05D001913 4.3e-21 107.1 468 28.4
TWI15G0462 Tripterygium wilfordii HOM05D002036 ORTHO05D001913 1.2e-20 105.5 442 29.4
CANSAT49G0001 Cannabis sativa HOM05D002036 ORTHO05D001913 2.1e-20 104.8 499 26.5
Sabra06G0164600 Salix brachista HOM05D002036 ORTHO05D001913 2.8e-20 104.4 491 27.1
Ciclev10011022m.g Citrus clementina HOM05D002036 ORTHO05D001913 3.6e-20 104.0 487 26.9
MD12G1134200 Malus domestica HOM05D002036 ORTHO05D001913 3.6e-20 104.0 452 28.1
MD04G1118500 Malus domestica HOM05D002036 ORTHO05D001913 4.7e-20 103.6 486 27.6
Gohir.A10G211100 Gossypium hirsutum HOM05D002036 ORTHO05D001913 1.1e-19 102.4 575 27.5
CiPaw.10G141600 Carya illinoinensis HOM05D002036 ORTHO05D001913 2.3e-19 101.3 605 25.5
Gorai.011G246100 Gossypium raimondii HOM05D002036 ORTHO05D001913 5.2e-19 100.1 575 27.1
Manes.08G076600 Manihot esculenta HOM05D002036 ORTHO05D001913 5.2e-19 100.1 485 25.8
CiPaw.09G187300 Carya illinoinensis HOM05D002036 ORTHO05D001913 6.8e-19 99.8 484 26.9
MD07G1189400 Malus domestica HOM05D002036 ORTHO05D001913 1.2e-18 99.0 391 30.2
Potri.006G213700 Populus trichocarpa HOM05D002036 ORTHO05D001913 1.5e-18 98.6 489 26.2
TWI38G1436 Tripterygium wilfordii HOM05D002036 ORTHO05D001913 1.5e-18 98.6 164 39.6
Cpa.g.sc1.328 Carica papaya HOM05D002036 ORTHO05D001913 2.0e-18 98.2 108 49.1
Cpa.g.sc2422.1 Carica papaya HOM05D002036 ORTHO05D001913 5.8e-18 96.7 485 26.8
CSS0022078 Camellia sinensis var. sinensis HOM05D002036 ORTHO05D001913 7.5e-18 96.3 461 26.7
vmacro20108 Vaccinium macrocarpon HOM05D002036 ORTHO05D001913 2.2e-17 94.7 505 26.3
Duzib093G0032 Durio zibethinus HOM05D002036 ORTHO05D001913 3.7e-17 94.0 500 26.0
Sabra16G0088100 Salix brachista HOM05D002036 ORTHO05D001913 4.1e-16 90.5 257 31.9
TAR680G0007 Trochodendron aralioides HOM05D002036 ORTHO05D001913 4.1e-16 90.5 165 37.6
Sabra08G0035300 Salix brachista HOM05D002036 ORTHO05D001913 9.2e-16 89.4 486 27.0
Actinidia19752 Actinidia chinensis HOM05D002036 ORTHO05D001913 1.6e-15 88.6 487 25.7
arahy.Tifrunner.gnm1.ann1.91Z2HD Arachis hypogaea HOM05D002036 ORTHO05D001913 2.1e-15 88.2 493 27.4
PGSC0003DMG400023513 Solanum tuberosum HOM05D002036 ORTHO05D001913 3.5e-15 87.4 430 26.7
TWI77G0326 Tripterygium wilfordii HOM05D002036 ORTHO05D001913 3.5e-15 87.4 450 26.4
Gorai.006G176300 Gossypium raimondii HOM05D002036 ORTHO05D001913 4.6e-15 87.0 489 26.6
Medtr1g067570 Medicago truncatula HOM05D002036 ORTHO05D001913 1.0e-14 85.9 477 26.6
COL.COLO4_09164 Corchorus olitorius HOM05D002036 ORTHO05D001913 1.3e-14 85.5 501 25.9
Gohir.D09G154900 Gossypium hirsutum HOM05D002036 ORTHO05D001913 1.7e-14 85.1 483 26.7
Oeu032114.2 Olea europaea HOM05D002036 ORTHO05D001913 1.7e-14 85.1 374 28.9
MD01G1120200 Malus domestica HOM05D002036 ORTHO05D001913 2.3e-14 84.7 404 28.5
FvH4_7g21020 Fragaria vesca HOM05D002036 ORTHO05D001913 5.1e-14 83.6 377 27.6
FAN01G2102 Fragaria x ananassa HOM05D002036 ORTHO05D001913 5.1e-14 83.6 377 27.6
Gohir.A09G159300 Gossypium hirsutum HOM05D002036 ORTHO05D001913 6.6e-14 83.2 487 26.9
Sopen05g033240 Solanum pennellii HOM05D002036 ORTHO05D001913 6.6e-14 83.2 401 26.9
FAN06G4662 Fragaria x ananassa HOM05D002036 ORTHO05D001913 8.6e-14 82.8 377 27.6
FAN10G4143 Fragaria x ananassa HOM05D002036 ORTHO05D001913 8.6e-14 82.8 377 27.6
THA.LOC104806591 Tarenaya hassleriana HOM05D002036 ORTHO05D001913 8.6e-14 82.8 493 25.2
Duzib128G0163 Durio zibethinus HOM05D002036 ORTHO05D001913 1.1e-13 82.4 504 25.0
Potri.016G080200 Populus trichocarpa HOM05D002036 ORTHO05D001913 1.9e-13 81.6 228 31.1
Thecc.05G046700 Theobroma cacao HOM05D002036 ORTHO05D001913 1.9e-13 81.6 510 24.9
FAN06G2913 Fragaria x ananassa HOM05D002036 ORTHO05D001913 3.3e-13 80.9 377 27.3
MBI05_g07856_MAGBIO Magnolia biondii HOM05D002036 ORTHO05D001913 4.3e-13 80.5 510 24.3
Migut.J00378 Erythranthe guttata HOM05D002036 ORTHO05D001913 5.6e-13 80.1 476 26.9
Gohir.D01G208400 Gossypium hirsutum HOM05D002036 ORTHO05D001913 7.3e-13 79.7 483 24.6
Solyc05g054770.3 Solanum lycopersicum HOM05D002036 ORTHO05D001913 9.5e-13 79.3 438 26.0
Hma1.2p1_0111F.1_g053220 Hydrangea macrophylla HOM05D002036 ORTHO05D001913 1.2e-12 79.0 438 27.6
TAR636G3674 Trochodendron aralioides HOM05D002036 ORTHO05D001913 1.6e-12 78.6 144 37.5
Gohir.A01G219300 Gossypium hirsutum HOM05D002036 ORTHO05D001913 2.1e-12 78.2 478 25.1
Gorai.009G423300 Gossypium raimondii HOM05D002036 ORTHO05D001913 2.8e-12 77.8 445 24.9
TPR.G23073 Trifolium pratense HOM05D002036 ORTHO05D001913 3.6e-12 77.4 483 25.5
Cc06_g03130 Coffea canephora HOM05D002036 ORTHO05D001913 1.1e-11 75.9 494 24.3
THA.LOC104805416 Tarenaya hassleriana HOM05D002036 ORTHO05D001913 1.1e-11 75.9 479 24.4
Manes.09G085700 Manihot esculenta HOM05D002036 ORTHO05D001913 1.8e-11 75.1 262 30.5
RcHm_v2.0_Chr1g0365411 Rosa chinensis HOM05D002036 ORTHO05D001913 2.3e-11 74.7 361 28.3
Gohir.D05G299400 Gossypium hirsutum HOM05D002036 ORTHO05D001913 4.0e-11 73.9 464 27.6
Gorai.002G253500 Gossypium raimondii HOM05D002036 ORTHO05D001913 4.0e-11 73.9 570 24.2
Phvul.001G171300 Phaseolus vulgaris HOM05D002036 ORTHO05D001913 4.0e-11 73.9 499 24.8
Atru.chr12.567 Acer truncatum HOM05D002036 ORTHO05D001913 5.2e-11 73.6 140 40.7
Gorai.009G316900 Gossypium raimondii HOM05D002036 ORTHO05D001913 6.8e-11 73.2 429 27.3
Lalb_Chr10g0091961 Lupinus albus HOM05D002036 ORTHO05D001913 6.8e-11 73.2 475 24.2
THA.LOC104823434 Tarenaya hassleriana HOM05D002036 ORTHO05D001913 1.5e-10 72.0 488 24.6
TWI74G0701 Tripterygium wilfordii HOM05D002036 ORTHO05D001913 1.5e-10 72.0 451 25.5
CSS0018541 Camellia sinensis var. sinensis HOM05D002036 ORTHO05D001913 2.0e-10 71.6 442 25.1
Glyma.02G095900 Glycine max HOM05D002036 ORTHO05D001913 2.0e-10 71.6 84 46.4
SalBow3G1915 Salvia bowleyana HOM05D002036 ORTHO05D001913 2.0e-10 71.6 493 25.6
CSS0017146 Camellia sinensis var. sinensis HOM05D002036 ORTHO05D001913 3.4e-10 70.9 450 25.1
Gohir.D04G118200 Gossypium hirsutum HOM05D002036 ORTHO05D001913 7.6e-10 69.7 267 27.7
vmacro07138 Vaccinium macrocarpon HOM05D002036 ORTHO05D001913 9.9e-10 69.3 195 33.8
arahy.Tifrunner.gnm1.ann1.EFG9YQ Arachis hypogaea HOM05D002036 ORTHO05D001913 1.3e-09 68.9 84 50.0
arahy.Tifrunner.gnm1.ann1.YI9QZC Arachis hypogaea HOM05D002036 ORTHO05D001913 1.3e-09 68.9 84 50.0
CSS0035513 Camellia sinensis var. sinensis HOM05D002036 ORTHO05D001913 1.3e-09 68.9 450 25.1
Sc01g0003870 Simmondsia chinensis HOM05D002036 ORTHO05D001913 1.3e-09 68.9 579 25.2
Cc02_g08520 Coffea canephora HOM05D002036 ORTHO05D001913 2.9e-09 67.8 94 46.8
Ca_09596_v3 Cicer arietinum L. HOM05D002036 ORTHO05D001913 3.8e-09 67.4 487 25.3
Lj1g0001009 Lotus japonicus HOM05D002036 ORTHO05D001913 6.4e-09 66.6 160 32.5
Hund24066 Selenicereus undatus HOM05D002036 ORTHO05D001913 1.4e-08 65.5 495 22.2
Aa31LG10G9580 Aethionema arabicum HOM05D002036 ORTHO05D001913 2.4e-08 64.7 457 23.6
CARHR163450 Cardamine hirsuta HOM05D002036 ORTHO05D001913 2.4e-08 64.7 461 24.3
Manes.10G036800 Manihot esculenta HOM05D002036 ORTHO05D001913 2.4e-08 64.7 389 27.0
Peaxi162Scf00015g02321 Petunia axillaris HOM05D002036 ORTHO05D001913 2.4e-08 64.7 315 25.1
Actinidia05291 Actinidia chinensis HOM05D002036 ORTHO05D001913 3.2e-08 64.3 470 24.3
Glyma.13G133500 Glycine max HOM05D002036 ORTHO05D001913 4.1e-08 63.9 635 24.1
Psat6g068640 Pisum sativum HOM05D002036 ORTHO05D001913 4.1e-08 63.9 484 25.0
Gohir.A04G079050 Gossypium hirsutum HOM05D002036 ORTHO05D001913 5.4e-08 63.5 399 25.1
Lj2C101T4 Lonicera japonica HOM05D002036 ORTHO05D001913 5.4e-08 63.5 475 25.3
Phvul.007G159500 Phaseolus vulgaris HOM05D002036 ORTHO05D001913 7.1e-08 63.2 505 24.8
Glyma.18G285600 Glycine max HOM05D002036 ORTHO05D001913 9.2e-08 62.8 74 47.3
Phvul.008G016000 Phaseolus vulgaris HOM05D002036 ORTHO05D001913 1.2e-07 62.4 110 38.2
Lj5g0022058 Lotus japonicus HOM05D002036 ORTHO05D001913 1.6e-07 62.0 615 23.6
Sed0000481 Sechium edule HOM05D002036 ORTHO05D001913 1.6e-07 62.0 265 27.5
BcaB02g08522 Brassica carinata HOM05D002036 ORTHO05D001913 2.1e-07 61.6 446 26.2
Oeu060059.1 Olea europaea HOM05D002036 ORTHO05D001913 2.1e-07 61.6 466 25.1
MSTRG.19112 Avicennia marina HOM05D002036 ORTHO05D001913 2.7e-07 61.2 344 27.9
Lalb_Chr17g0336321 Lupinus albus HOM05D002036 ORTHO05D001913 2.7e-07 61.2 84 41.7
Medtr7g022810 Medicago truncatula HOM05D002036 ORTHO05D001913 2.7e-07 61.2 85 43.5
BraA07t29854Z Brassica rapa HOM05D002036 ORTHO05D001913 3.5e-07 60.8 417 24.5
DCAR_027681 Daucus carota HOM05D002036 ORTHO05D001913 3.5e-07 60.8 393 24.7
Lj1g0026714 Lotus japonicus HOM05D002036 ORTHO05D001913 3.5e-07 60.8 349 26.4
Sed0012455 Sechium edule HOM05D002036 ORTHO05D001913 3.5e-07 60.8 634 22.4
BcaC02g09154 Brassica carinata HOM05D002036 ORTHO05D001913 4.6e-07 60.5 419 24.8
Oeu023869.2 Olea europaea HOM05D002036 ORTHO05D001913 6.0e-07 60.1 465 24.5
Nitab4.5_0014701g0010 Nicotiana tabacum HOM05D002769 ORTHO05D003160 7.8e-07 59.7 480 24.4
PGR044G2099 Punica granatum HOM05D002036 ORTHO05D001913 7.8e-07 59.7 83 41.0
AUR62040988 Chenopodium quinoa HOM05D002036 ORTHO05D001913 1.0e-06 59.3 501 23.6
VMungo1383G1185 Vigna mungo HOM05D002036 ORTHO05D001913 1.0e-06 59.3 76 43.4
BolC4t25474H Brassica oleracea HOM05D002036 ORTHO05D001913 1.3e-06 58.9 419 25.1
Migut.M00429 Erythranthe guttata HOM05D002036 ORTHO05D001913 1.3e-06 58.9 119 38.7
Lalb_Chr21g0314431 Lupinus albus HOM05D002036 ORTHO05D001913 1.3e-06 58.9 501 24.0
ClCG10G020860 Citrullus lanatus HOM05D002036 ORTHO05D001913 2.3e-06 58.2 258 27.5
Sp5g08790 Schrenkiella parvula HOM05D002036 ORTHO05D001913 2.3e-06 58.2 452 23.7
CsaV3_3G035160 Cucumis sativus L. HOM05D002036 ORTHO05D001913 3.0e-06 57.8 242 30.2
Sc20g0004420 Simmondsia chinensis HOM05D002036 ORTHO05D001913 3.0e-06 57.8 610 23.4
MELO3C009285.2 Cucumis melo HOM05D002036 ORTHO05D001913 3.9e-06 57.4 242 30.2
CANSAT56G3745 Cannabis sativa HOM05D002036 ORTHO05D001913 6.6e-06 56.6 52 55.8
Ca_27919_v3 Cicer arietinum L. HOM05D002036 ORTHO05D001913 6.6e-06 56.6 192 34.4
Eucgr.J01167 Eucalyptus grandis HOM05D002036 ORTHO05D001913 6.6e-06 56.6 51 56.9
Thhalv10010116m.g Eutrema salsugineum HOM05D002036 ORTHO05D001913 8.6e-06 56.2 457 23.2
Thhalv10016240m.g Eutrema salsugineum HOM05D002036 ORTHO05D001913 8.6e-06 56.2 460 23.9
PGR004G2455 Punica granatum HOM05D002036 ORTHO05D001913 8.6e-06 56.2 246 30.1


User provided reference genes

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