Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021189 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 2.4e-92 342.0 162 100.0
CSS0046955 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 4.6e-91 337.8 162 98.1
CSS0019729 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 3.9e-90 334.7 162 98.1
Rhsim01G0118600 Rhododendron simsii HOM05D006321 ORTHO05D007929 1.5e-81 306.2 158 88.0
Dinv25432 Davidia involucrata HOM05D006321 ORTHO05D007929 1.6e-80 302.8 158 88.6
Potri.018G143500 Populus trichocarpa HOM05D006321 ORTHO05D007929 2.1e-80 302.4 162 87.0
QL02p047686 Quercus lobata HOM05D006321 ORTHO05D007929 2.4e-79 298.9 158 86.1
Sc03g0007150 Simmondsia chinensis HOM05D006321 ORTHO05D007929 2.4e-79 298.9 158 85.4
CiPaw.08G033200 Carya illinoinensis HOM05D006321 ORTHO05D007929 4.0e-79 298.1 158 87.3
Glyma.01G110600 Glycine max HOM05D006321 ORTHO05D007929 5.3e-79 297.7 158 86.1
COL.COLO4_27457 Corchorus olitorius HOM05D006321 ORTHO05D007929 5.8e-78 294.3 158 85.4
Atru.chr7.791 Acer truncatum HOM05D006321 ORTHO05D007929 9.9e-78 293.5 161 83.9
VMungo0540G0928 Vigna mungo HOM05D006321 ORTHO05D007929 9.9e-78 293.5 158 84.8
Eucgr.C00122 Eucalyptus grandis HOM05D006321 ORTHO05D007929 2.2e-77 292.4 158 82.9
Glyma.03G076300 Glycine max HOM05D006321 ORTHO05D007929 3.8e-77 291.6 158 84.8
Nitab4.5_0002365g0010 Nicotiana tabacum HOM05D006321 ORTHO05D007929 6.4e-77 290.8 158 83.5
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 1.1e-76 290.0 158 84.2
Thecc.09G184700 Theobroma cacao HOM05D006321 ORTHO05D007929 1.1e-76 290.0 156 85.3
CAN.G279.32 Capsicum annuum HOM05D006321 ORTHO05D007929 1.4e-76 289.7 158 83.5
Phvul.006G013600 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 1.9e-76 289.3 158 84.2
TAR622G0244 Trochodendron aralioides HOM05D006321 ORTHO05D007929 4.2e-76 288.1 158 82.9
Nitab4.5_0000366g0180 Nicotiana tabacum HOM05D006321 ORTHO05D007929 5.4e-76 287.7 158 82.3
CAN.G547.21 Capsicum annuum HOM05D006321 ORTHO05D007929 7.1e-76 287.3 158 82.9
RcHm_v2.0_Chr4g0399821 Rosa chinensis HOM05D006321 ORTHO05D007929 7.1e-76 287.3 158 84.8
Duzib251G0486 Durio zibethinus HOM05D006321 ORTHO05D007929 9.3e-76 287.0 159 83.6
arahy.Tifrunner.gnm1.ann1.CI6UTV Arachis hypogaea HOM05D006321 ORTHO05D007929 1.2e-75 286.6 150 86.7
Lalb_Chr04g0263391 Lupinus albus HOM05D006321 ORTHO05D007929 1.2e-75 286.6 156 83.3
Phvul.003G138800 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 1.6e-75 286.2 158 82.9
Phvul.003G139178 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 1.6e-75 286.2 158 82.9
Prupe.1G076700 Prunus persica HOM05D006321 ORTHO05D007929 1.6e-75 286.2 158 82.9
Sed0024765 Sechium edule HOM05D006321 ORTHO05D007929 2.1e-75 285.8 154 81.8
PGSC0003DMG400028738 Solanum tuberosum HOM05D006321 ORTHO05D007929 2.1e-75 285.8 158 81.6
arahy.Tifrunner.gnm1.ann1.N3I1N2 Arachis hypogaea HOM05D006321 ORTHO05D007929 2.7e-75 285.4 149 87.2
EL10Ac5g11827 Beta vulgaris HOM05D006321 ORTHO05D007929 2.7e-75 285.4 158 83.5
Potri.006G076300 Populus trichocarpa HOM05D006321 ORTHO05D007929 2.7e-75 285.4 162 81.5
COL.COLO4_07534 Corchorus olitorius HOM05D006321 ORTHO05D007929 3.5e-75 285.0 148 87.8
Gohir.A06G171500 Gossypium hirsutum HOM05D006321 ORTHO05D007929 3.5e-75 285.0 156 82.7
Gorai.010G210200 Gossypium raimondii HOM05D006321 ORTHO05D007929 3.5e-75 285.0 156 82.7
PGR142G1933 Punica granatum HOM05D006321 ORTHO05D007929 3.5e-75 285.0 157 83.4
Solyc07g008910.3 Solanum lycopersicum HOM05D006321 ORTHO05D007929 3.5e-75 285.0 158 81.6
Aqoxy3G01064 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 6.0e-75 284.3 158 81.0
FvH4_4g07380 Fragaria vesca HOM05D006321 ORTHO05D007929 6.0e-75 284.3 155 85.2
FAN12G2844 Fragaria x ananassa HOM05D006321 ORTHO05D007929 6.0e-75 284.3 155 85.2
FAN22G1279 Fragaria x ananassa HOM05D006321 ORTHO05D007929 6.0e-75 284.3 155 85.2
THA.LOC104817778 Tarenaya hassleriana HOM05D006321 ORTHO05D007929 6.0e-75 284.3 159 82.4
Gohir.D06G179600 Gossypium hirsutum HOM05D006321 ORTHO05D007929 1.3e-74 283.1 156 82.1
AUR62030699 Chenopodium quinoa HOM05D006321 ORTHO05D007929 1.7e-74 282.7 158 80.4
Medtr3g465100 Medicago truncatula HOM05D006321 ORTHO05D007929 1.7e-74 282.7 158 81.0
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 1.7e-74 282.7 158 81.0
Psat4g027120 Pisum sativum HOM05D006321 ORTHO05D007929 1.7e-74 282.7 158 81.0
Ca_14974_v3 Cicer arietinum L. HOM05D006321 ORTHO05D007929 3.0e-74 282.0 158 82.3
GSVIVG01010872001 Vitis vinifera HOM05D006321 ORTHO05D007929 3.0e-74 282.0 155 84.5
AUR62030694 Chenopodium quinoa HOM05D006321 ORTHO05D007929 3.9e-74 281.6 158 79.7
TWI60G1509 Tripterygium wilfordii HOM05D006321 ORTHO05D007929 3.9e-74 281.6 158 81.0
MELO3C012967.2 Cucumis melo HOM05D006321 ORTHO05D007929 5.1e-74 281.2 154 81.2
FAN07G2214 Fragaria x ananassa HOM05D006321 ORTHO05D007929 6.6e-74 280.8 152 85.5
A10p14640 Brassica napus HOM05D006321 ORTHO05D007929 1.1e-73 280.0 158 77.2
BraA10t43551Z Brassica rapa HOM05D006321 ORTHO05D007929 1.1e-73 280.0 158 77.2
MBI17_g07973_MAGBIO Magnolia biondii HOM05D006321 ORTHO05D007929 1.1e-73 280.0 158 80.4
Manes.02G106300 Manihot esculenta HOM05D006321 ORTHO05D007929 1.1e-73 280.0 158 80.4
CsaV3_3G025050 Cucumis sativus L. HOM05D006321 ORTHO05D007929 2.5e-73 278.9 154 80.5
AL8G33200 Arabidopsis lyrata HOM05D006321 ORTHO05D007929 7.4e-73 277.3 158 76.6
Carub.0008s1773 Capsella rubella HOM05D006321 ORTHO05D007929 9.6e-73 276.9 158 75.9
Thhalv10014893m.g Eutrema salsugineum HOM05D006321 ORTHO05D007929 9.6e-73 276.9 158 76.6
BcaC04g19986 Brassica carinata HOM05D006321 ORTHO05D007929 1.3e-72 276.6 158 75.9
Lj6g0010246 Lotus japonicus HOM05D006321 ORTHO05D007929 1.6e-72 276.2 158 79.7
AT5G57230 Arabidopsis thaliana HOM05D006321 ORTHO05D007929 2.8e-72 275.4 158 75.9
MSTRG.10445 Avicennia marina HOM05D006321 ORTHO05D007929 2.8e-72 275.4 158 80.4
Sp6g18970 Schrenkiella parvula HOM05D006321 ORTHO05D007929 3.6e-72 275.0 158 75.9
BcaB08g36085 Brassica carinata HOM05D006321 ORTHO05D007929 8.1e-72 273.9 158 75.9
TPR.G32885 Trifolium pratense HOM05D006321 ORTHO05D007929 1.1e-71 273.5 158 78.5
Cc06_g21570 Coffea canephora HOM05D006321 ORTHO05D007929 1.4e-71 273.1 157 79.6
HanXRQChr16g0529271 Helianthus annuus HOM05D006321 ORTHO05D007929 1.8e-71 272.7 159 75.5
CANSAT11G0316 Cannabis sativa HOM05D006321 ORTHO05D007929 2.4e-71 272.3 159 78.6
Hund14984 Selenicereus undatus HOM05D006321 ORTHO05D007929 2.4e-71 272.3 211 63.5
Actinidia01283 Actinidia chinensis HOM05D006321 ORTHO05D007929 3.1e-71 271.9 158 82.3
Aa31LG3G13120 Aethionema arabicum HOM05D006321 ORTHO05D007929 3.1e-71 271.9 158 75.3
ECA240G2363 Erigeron canadensis HOM05D006321 ORTHO05D007929 4.0e-71 271.6 156 77.6
CARHR271020 Cardamine hirsuta HOM05D006321 ORTHO05D007929 5.3e-71 271.2 158 74.7
HanXRQChr03g0068421 Helianthus annuus HOM05D006321 ORTHO05D007929 2.0e-70 269.2 150 78.7
HPP92_002000 Vanilla planifolia HOM05D006321 ORTHO05D007929 2.6e-70 268.9 159 75.5
C09p49090 Brassica napus HOM05D006321 ORTHO05D007929 3.4e-70 268.5 166 72.3
BolC9t57758H Brassica oleracea HOM05D006321 ORTHO05D007929 3.4e-70 268.5 166 72.3
MD16G1249800 Malus domestica HOM05D006321 ORTHO05D007929 3.4e-70 268.5 148 85.8
ECA234G0872 Erigeron canadensis HOM05D006321 ORTHO05D007929 2.9e-69 265.4 156 76.3
Lsat_1_v5_gn_7_55681 Lactuca sativa HOM05D006321 ORTHO05D007929 1.9e-68 262.7 157 76.4
Migut.L01889 Erythranthe guttata HOM05D006321 ORTHO05D007929 2.4e-68 262.3 162 74.7
Os06g0482200 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 9.3e-68 260.4 155 73.5
Ah.12g059430 Amaranthus hybridus HOM05D006321 ORTHO05D007929 1.2e-67 260.0 156 76.9
PSO339G6079 Papaver somniferum HOM05D006321 ORTHO05D007929 1.6e-67 259.6 159 74.8
Cpa.g.sc95.16 Carica papaya HOM05D006321 ORTHO05D007929 2.7e-67 258.8 158 77.8
Os10g0162834 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 1.3e-66 256.5 155 72.3
SGA_v2.0_scaffold21G09650 Striga asiatica HOM05D006321 ORTHO05D007929 5.1e-66 254.6 162 71.6
Zm00001eb161640 Zea mays HOM05D006321 ORTHO05D007929 1.1e-65 253.4 149 75.8
PSO384G3851 Papaver somniferum HOM05D006321 ORTHO05D007929 2.5e-65 252.3 159 72.3
CDE06G2300 Ceratophyllum demersum HOM05D006321 ORTHO05D007929 7.4e-65 250.8 135 83.7
Nn2g12444 Nelumbo nucifera HOM05D006321 ORTHO05D007929 2.8e-64 248.8 137 81.0
AUR62036340 Chenopodium quinoa HOM05D006321 ORTHO05D007929 8.1e-64 247.3 135 82.2
unitig_736.g22252 Utricularia gibba HOM05D006321 ORTHO05D007929 4.0e-63 245.0 144 78.5
SEGI_34333 Sequoiadendron giganteum HOM05D006321 ORTHO05D007929 4.5e-62 241.5 157 68.8
Sopen07g004840 Solanum pennellii HOM05D003168 ORTHO05D003590 2.2e-61 239.2 135 80.0
MD13G1243200 Malus domestica HOM05D006321 ORTHO05D007929 2.9e-61 238.8 138 79.7
Haze_22010 Corylus avellana HOM05D006321 ORTHO05D007929 1.4e-60 236.5 152 74.3
Sabra18G0117000 Salix brachista HOM05D003168 ORTHO05D003525 8.7e-58 227.3 117 88.0
vmacro20823 Vaccinium macrocarpon HOM05D006321 ORTHO05D007929 2.4e-55 219.2 138 73.2
Psat5g235880 Pisum sativum HOM05D006321 ORTHO05D007929 3.1e-55 218.8 116 84.5
Sabra06G0057200 Salix brachista HOM05D006321 ORTHO05D007929 1.0e-53 213.8 183 59.6
Mapoly0003s0233 Marchantia polymorpha HOM05D006321 ORTHO05D007929 4.2e-52 208.4 152 61.2
Oeu044678.1 Olea europaea HOM05D006321 ORTHO05D007929 9.3e-52 207.2 114 83.3
Pp3c22_13020 Physcomitrium patens HOM05D006321 ORTHO05D007929 1.6e-51 206.5 153 60.8
Migut.G01073 Erythranthe guttata HOM05D006321 ORTHO05D007929 3.5e-51 205.3 116 80.2
FAN17G2672 Fragaria x ananassa HOM05D006321 ORTHO05D007929 1.3e-50 203.4 155 67.7
Oeu030095.1 Olea europaea HOM05D006321 ORTHO05D007929 2.3e-50 202.6 121 79.3
Mapoly0003s0169 Marchantia polymorpha HOM05D006321 ORTHO05D007929 5.1e-50 201.4 152 59.2
Peaxi162Scf00324g00017 Petunia axillaris HOM05D006321 ORTHO05D007929 3.7e-48 195.3 102 85.3
PSO541G2755 Papaver somniferum HOM05D006321 ORTHO05D007929 2.4e-47 192.6 114 75.4
Aqoxy108s003 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 2.6e-46 189.1 129 68.2
Lj6A87G16 Lonicera japonica HOM05D006321 ORTHO05D007929 3.8e-45 185.3 95 88.4
ATR1152G025 Amborella trichopoda HOM05D006321 ORTHO05D007929 6.5e-45 184.5 96 83.3
DCAR_005801 Daucus carota HOM05D006321 ORTHO05D007929 2.5e-41 172.6 102 72.5
CBR_g19745 Chara braunii HOM05D006321 ORTHO05D007929 1.7e-37 159.8 132 58.3
BcaB05g22329 Brassica carinata HOM05D006321 ORTHO05D007929 2.2e-37 159.5 158 54.4
COL.COLO4_32845 Corchorus olitorius HOM05D006321 ORTHO05D007929 4.2e-36 155.2 85 83.5
TAR629G2308 Trochodendron aralioides HOM05D006321 ORTHO05D007929 5.5e-36 154.8 135 60.7
Dinv41168 Davidia involucrata HOM05D000015 ORTHO05D003525 1.2e-35 153.7 86 83.7
Lj6A100T20 Lonicera japonica HOM05D006321 ORTHO05D007929 9.4e-28 127.5 67 86.6
Sopen00g012850 Solanum pennellii HOM05D006321 ORTHO05D007929 1.9e-20 103.2 52 86.5
BolC2t07570H Brassica oleracea HOM05D006321 ORTHO05D007929 8.3e-16 87.8 57 68.4
C02p14450 Brassica napus HOM05D006321 ORTHO05D007929 8.3e-08 61.2 68 45.6


User provided reference genes

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