Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 4.4e-172 607.8 302 100.0
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 1.6e-169 599.4 302 98.7
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 3.9e-112 408.7 310 67.1
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 2.1e-105 386.3 308 61.7
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 2.1e-105 386.3 302 64.6
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 3.6e-105 385.6 300 63.3
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 4.0e-104 382.1 310 62.9
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 3.3e-103 379.0 313 61.7
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 3.3e-103 379.0 313 61.7
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 1.7e-102 376.7 301 61.1
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 3.7e-102 375.6 300 63.3
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 6.3e-102 374.8 300 61.0
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 1.1e-101 374.0 320 59.7
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 3.5e-100 369.0 297 63.6
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 4.5e-100 368.6 300 59.0
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 4.5e-100 368.6 301 62.5
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 4.5e-100 368.6 297 62.6
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 3.8e-99 365.5 306 57.8
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 3.8e-99 365.5 307 59.3
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 6.5e-99 364.8 301 58.8
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 8.5e-99 364.4 297 62.3
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 1.5e-98 363.6 297 62.0
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 1.9e-98 363.2 300 62.0
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 2.5e-98 362.8 327 57.5
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 4.2e-98 362.1 306 59.5
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 4.2e-98 362.1 321 57.3
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 7.2e-98 361.3 300 60.7
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 1.2e-97 360.5 309 60.2
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 1.6e-97 360.1 309 60.2
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 2.7e-97 359.4 301 61.1
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 3.6e-97 359.0 300 61.3
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 4.7e-97 358.6 309 59.9
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 8.0e-97 357.8 300 61.3
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 1.8e-96 356.7 368 51.9
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 2.3e-96 356.3 300 58.0
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 2.3e-96 356.3 314 58.9
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 4.0e-96 355.5 299 62.2
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 6.8e-96 354.8 297 58.9
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 6.8e-96 354.8 303 59.7
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 1.5e-95 353.6 297 59.6
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 2.0e-95 353.2 308 58.4
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 2.6e-95 352.8 307 57.7
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 3.4e-95 352.4 297 59.6
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 4.4e-95 352.1 309 57.6
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 5.7e-95 351.7 298 59.1
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 4.8e-94 348.6 302 58.6
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 2.4e-93 346.3 297 58.6
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 3.1e-93 345.9 301 56.8
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 4.1e-93 345.5 241 70.1
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 7.0e-93 344.7 297 58.6
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 7.0e-93 344.7 305 58.7
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 2.7e-92 342.8 289 61.6
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 5.0e-91 338.6 310 57.4
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 5.0e-91 338.6 324 54.6
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 2.5e-90 336.3 318 57.5
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 2.5e-90 336.3 310 56.5
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 3.2e-90 335.9 298 57.0
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 3.2e-90 335.9 322 54.0
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 1.2e-89 334.0 301 56.5
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 6.1e-89 331.6 279 60.9
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 1.0e-88 330.9 296 55.1
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 2.3e-88 329.7 299 56.5
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 4.0e-88 328.9 299 55.9
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 4.0e-88 328.9 307 56.4
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 6.8e-88 328.2 343 51.6
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 1.5e-87 327.0 299 55.5
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 7.5e-87 324.7 299 54.8
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 9.8e-87 324.3 275 57.8
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 2.8e-86 322.8 305 54.8
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 8.3e-86 321.2 307 55.0
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 1.6e-84 317.0 311 55.0
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 1.7e-83 313.5 309 55.7
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 3.3e-82 309.3 305 52.1
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 4.7e-81 305.4 316 51.9
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 5.2e-80 302.0 297 54.2
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 3.7e-78 295.8 177 78.5
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 1.1e-77 294.3 334 48.8
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 1.8e-77 293.5 282 57.1
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 4.1e-77 292.4 220 61.8
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 2.3e-75 286.6 318 49.1
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 2.9e-75 286.2 227 59.9
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 3.3e-74 282.7 328 47.6
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 4.3e-74 282.3 220 62.7
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 1.6e-73 280.4 279 50.9
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 1.6e-73 280.4 224 60.3
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 5.8e-71 271.9 221 58.4
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 5.8e-71 271.9 276 50.0
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 3.2e-69 266.2 278 52.5
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 1.6e-68 263.8 181 69.6
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 7.8e-68 261.5 388 41.5
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 6.6e-67 258.5 236 62.7
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 9.2e-61 238.0 305 42.0
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 3.0e-59 233.0 308 39.9
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 4.3e-58 229.2 365 39.2
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 7.1e-53 211.8 323 40.9
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 3.5e-52 209.5 210 54.3
Cpa.g.sc6.264 Carica papaya HOM05D006469 ORTHO05D008034 8.9e-48 194.9 116 73.3
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 2.4e-45 186.8 258 44.2
Nitab4.5_0000438g0160 Nicotiana tabacum HOM05D006469 ORTHO05D008034 6.0e-44 182.2 185 49.7
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 1.7e-43 180.6 210 49.0
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 7.3e-42 175.3 175 46.9
TAR376G1090 Trochodendron aralioides HOM05D006469 ORTHO05D008034 2.8e-41 173.3 104 76.0
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 2.0e-39 167.2 242 42.6
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 2.2e-38 163.7 163 57.1
SEGI_12964 Sequoiadendron giganteum HOM05D006469 ORTHO05D008034 3.0e-35 153.3 159 44.0
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 6.6e-35 152.1 189 46.0
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 8.7e-35 151.8 176 49.4
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 9.9e-31 138.3 289 37.0
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 9.9e-31 138.3 289 37.0
Sabra07G0049000 Salix brachista HOM05D006469 ORTHO05D008034 9.9e-31 138.3 92 66.3
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 2.7e-28 130.2 229 41.0
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 6.0e-28 129.0 160 48.1
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 6.7e-27 125.6 174 46.0
MD15G1244100 Malus domestica HOM05D006469 ORTHO05D008034 1.6e-25 120.9 87 67.8
BolC9t57293H Brassica oleracea HOM05D006469 ORTHO05D008034 4.8e-25 119.4 211 39.8
CDE02G4028 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 1.7e-22 110.9 94 57.4
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 3.9e-19 99.8 161 43.5
Sabra05G0092400 Salix brachista HOM05D006469 ORTHO05D008034 6.5e-14 82.4 171 32.7
COL.COLO4_22441 Corchorus olitorius HOM05D006469 ORTHO05D008034 2.2e-09 67.4 76 48.7
Mapoly0123s0005 Marchantia polymorpha HOM05D005677 ORTHO05D006966 2.2e-09 67.4 136 36.0
SMO364G0506 Selaginella moellendorffii HOM05D005677 ORTHO05D006966 8.2e-09 65.5 126 33.3
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 5.3e-08 62.8 106 35.8
LjContig00448g0024692 Lotus japonicus HOM05D005677 ORTHO05D006966 6.9e-08 62.4 137 30.7
Ah.03g140850 Amaranthus hybridus HOM05D005677 ORTHO05D006966 2.0e-07 60.8 190 27.4
SalBow5G4467 Salvia bowleyana HOM05D005677 ORTHO05D006966 2.0e-07 60.8 112 33.9
FAN19G0062 Fragaria x ananassa HOM05D005677 ORTHO05D006966 2.6e-07 60.5 106 34.0
FAN23G0294 Fragaria x ananassa HOM05D005677 ORTHO05D006966 2.6e-07 60.5 154 27.9
FAN26G2780 Fragaria x ananassa HOM05D005677 ORTHO05D006966 2.6e-07 60.5 106 34.0
Gohir.D11G190800 Gossypium hirsutum HOM05D005677 ORTHO05D006966 2.6e-07 60.5 141 29.8
Duzib147G0715 Durio zibethinus HOM05D005677 ORTHO05D006966 3.4e-07 60.1 117 29.9
FvH4_1g13310 Fragaria vesca HOM05D005677 ORTHO05D006966 3.4e-07 60.1 106 34.0
Potri.007G025600 Populus trichocarpa HOM05D005677 ORTHO05D006966 3.4e-07 60.1 138 29.7
TAR625G0490 Trochodendron aralioides HOM05D005677 ORTHO05D006966 3.4e-07 60.1 120 34.2
Migut.L00520 Erythranthe guttata HOM05D005677 ORTHO05D006966 4.5e-07 59.7 133 30.1
FAN28G0162 Fragaria x ananassa HOM05D005677 ORTHO05D006966 4.5e-07 59.7 106 34.0
TWI53G0229 Tripterygium wilfordii HOM05D005677 ORTHO05D006966 4.5e-07 59.7 159 27.0
Aa31LG4G18970 Aethionema arabicum HOM05D005677 ORTHO05D006966 5.9e-07 59.3 115 33.9
PSO731G0124 Papaver somniferum HOM05D005677 ORTHO05D006966 5.9e-07 59.3 109 33.9
Oeu041446.1 Olea europaea HOM05D005677 ORTHO05D006966 1.3e-06 58.2 131 29.8
Atru.chr3.573 Acer truncatum HOM05D005677 ORTHO05D006966 1.7e-06 57.8 113 31.0
Nitab4.5_0000438g0170 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.7e-06 57.8 76 44.7
CANSAT01G0942 Cannabis sativa HOM05D005677 ORTHO05D006966 2.9e-06 57.0 117 34.2
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 2.9e-06 57.0 119 32.8
HanXRQChr09g0261461 Helianthus annuus HOM05D005677 ORTHO05D006966 2.9e-06 57.0 161 25.5
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 2.9e-06 57.0 211 27.5
Cpa.g.sc6.112 Carica papaya HOM05D005677 ORTHO05D006966 3.8e-06 56.6 137 30.7
Ca_22266_v3 Cicer arietinum L. HOM05D005677 ORTHO05D006966 5.0e-06 56.2 102 34.3
Ca_22280_v3 Cicer arietinum L. HOM05D005677 ORTHO05D006966 5.0e-06 56.2 102 34.3
ClCG01G019540 Citrullus lanatus HOM05D005677 ORTHO05D006966 5.0e-06 56.2 112 33.9
Gohir.A11G184300 Gossypium hirsutum HOM05D005677 ORTHO05D006966 5.0e-06 56.2 102 33.3
Gorai.007G203300 Gossypium raimondii HOM05D005677 ORTHO05D006966 5.0e-06 56.2 102 33.3
PSO210G3110 Papaver somniferum HOM05D005677 ORTHO05D006966 5.0e-06 56.2 106 34.0
CiPaw.03G182300 Carya illinoinensis HOM05D001602 ORTHO05D001470 6.5e-06 55.8 140 30.7
HPP92_022639 Vanilla planifolia HOM05D006469 ORTHO05D008034 6.5e-06 55.8 80 41.2
Glyma.02G057000 Glycine max HOM05D005677 ORTHO05D006966 8.5e-06 55.5 113 29.2
Lj2P453T29 Lonicera japonica HOM05D005677 ORTHO05D006966 8.5e-06 55.5 102 33.3


User provided reference genes

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