Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021165 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D003519 2.2e-61 239.2 160 100.0
Dinv39368 Davidia involucrata HOM05D000499 ORTHO05D007471 3.0e-26 122.5 104 60.6
TAR376G0340 Trochodendron aralioides HOM05D000499 ORTHO05D007471 5.5e-20 101.7 104 55.8
Sopen04g033350 Solanum pennellii HOM05D000499 ORTHO05D007471 7.1e-20 101.3 105 55.2
DCAR_019500 Daucus carota HOM05D003114 ORTHO05D003519 1.6e-19 100.1 104 55.8
Solyc04g079770.3 Solanum lycopersicum HOM05D000499 ORTHO05D007471 1.6e-19 100.1 105 54.3
Actinidia15289 Actinidia chinensis HOM05D000499 ORTHO05D007471 6.0e-19 98.2 153 44.4
Dinv36028 Davidia involucrata HOM05D000499 ORTHO05D007471 7.9e-19 97.8 124 44.4
PGSC0003DMG400016885 Solanum tuberosum HOM05D000499 ORTHO05D007471 7.9e-19 97.8 105 52.4
Lsat_1_v5_gn_4_123041 Lactuca sativa HOM05D000499 ORTHO05D007471 3.9e-18 95.5 106 50.9
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 7.4e-17 91.3 156 41.7
Nitab4.5_0009288g0030 Nicotiana tabacum HOM05D000499 ORTHO05D007471 9.6e-17 90.9 104 55.8
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 1.3e-16 90.5 106 52.8
Nitab4.5_0000110g0060 Nicotiana tabacum HOM05D000499 ORTHO05D007471 1.3e-16 90.5 103 52.4
MD07G1022800 Malus domestica HOM05D000499 ORTHO05D007471 1.6e-16 90.1 111 52.3
TWI36G1262 Tripterygium wilfordii HOM05D000499 ORTHO05D007471 3.7e-16 89.0 150 42.7
CAN.G371.117 Capsicum annuum HOM05D000499 ORTHO05D007471 8.2e-16 87.8 105 51.4
vmacro21599 Vaccinium macrocarpon HOM05D000499 ORTHO05D007471 4.0e-15 85.5 74 60.8
Lj4A47T76 Lonicera japonica HOM05D000499 ORTHO05D007471 5.3e-15 85.1 122 40.2
PSO675G5635 Papaver somniferum HOM05D000499 ORTHO05D007471 6.9e-15 84.7 105 45.7
PSO541G2319 Papaver somniferum HOM05D000499 ORTHO05D007471 4.5e-14 82.0 100 48.0
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 4.5e-14 82.0 122 41.8
HanXRQChr09g0268401 Helianthus annuus HOM05D000499 ORTHO05D007471 5.8e-14 81.6 106 46.2
QL02p007186 Quercus lobata HOM05D000499 ORTHO05D007471 1.3e-13 80.5 102 48.0
SGA_v2.0_scaffold14G07051 Striga asiatica HOM05D000499 ORTHO05D007471 2.2e-13 79.7 153 35.3
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 8.4e-13 77.8 122 40.2
TAR381G1236 Trochodendron aralioides HOM05D000499 ORTHO05D007471 8.4e-13 77.8 126 40.5
CiPaw.15G071000 Carya illinoinensis HOM05D000499 ORTHO05D007471 1.9e-12 76.6 122 40.2
Peaxi162Scf00280g00811 Petunia axillaris HOM05D000499 ORTHO05D007471 2.1e-11 73.2 100 50.0
Sed0006245 Sechium edule HOM05D000499 ORTHO05D007471 2.1e-11 73.2 156 34.0
Ah.07g208480 Amaranthus hybridus HOM05D000499 ORTHO05D007471 2.7e-11 72.8 104 47.1
Cfa018454 Carpinus fangiana HOM05D000499 ORTHO05D007471 3.5e-11 72.4 118 39.8
Haze_17612 Corylus avellana HOM05D000499 ORTHO05D007471 6.1e-11 71.6 118 39.0
Sp6g13080 Schrenkiella parvula HOM05D000499 ORTHO05D007471 1.8e-10 70.1 156 39.1
Haze_02428 Corylus avellana HOM05D000499 ORTHO05D007471 3.9e-10 68.9 109 46.8
MBI16_g13161_MAGBIO Magnolia biondii HOM05D000499 ORTHO05D007471 3.9e-10 68.9 82 46.3
Ciclev10003605m.g Citrus clementina HOM05D000499 ORTHO05D007471 6.7e-10 68.2 112 42.0
ECA232G3898 Erigeron canadensis HOM05D000499 ORTHO05D007471 5.7e-09 65.1 104 40.4
Actinidia22576 Actinidia chinensis HOM05D000499 ORTHO05D011058 7.4e-09 64.7 45 68.9
Cfa004969 Carpinus fangiana HOM05D000499 ORTHO05D007471 7.4e-09 64.7 104 45.2
FvH4_7g01740 Fragaria vesca HOM05D000499 ORTHO05D007471 7.4e-09 64.7 150 35.3
FAN06G3702 Fragaria x ananassa HOM05D000499 ORTHO05D007471 7.4e-09 64.7 150 35.3
Prupe.2G023300 Prunus persica HOM05D000499 ORTHO05D007471 7.4e-09 64.7 129 36.4
PGR083G1137 Punica granatum HOM05D000499 ORTHO05D007471 7.4e-09 64.7 157 36.3
SalBow8G5466 Salvia bowleyana HOM05D000499 ORTHO05D007471 7.4e-09 64.7 153 32.7
arahy.Tifrunner.gnm1.ann1.527VTZ Arachis hypogaea HOM05D000499 ORTHO05D007471 9.7e-09 64.3 110 37.3
Peaxi162Scf01064g00263 Petunia axillaris HOM05D000499 ORTHO05D007471 9.7e-09 64.3 100 46.0
RcHm_v2.0_Chr4g0418501 Rosa chinensis HOM05D000499 ORTHO05D007471 9.7e-09 64.3 83 49.4
arahy.Tifrunner.gnm1.ann1.HC27T5 Arachis hypogaea HOM05D000499 ORTHO05D007471 1.3e-08 63.9 110 34.5
A03p16470 Brassica napus HOM05D000499 ORTHO05D007471 1.6e-08 63.5 154 35.1
BraA03t10936Z Brassica rapa HOM05D000499 ORTHO05D007471 1.6e-08 63.5 154 35.1
Hma1.2p1_0584F.1_g183470 Hydrangea macrophylla HOM05D000499 ORTHO05D007471 4.8e-08 62.0 101 41.6
TWI12G0811 Tripterygium wilfordii HOM05D000499 ORTHO05D007471 4.8e-08 62.0 123 36.6
Manes.05G164700 Manihot esculenta HOM05D000499 ORTHO05D007471 6.3e-08 61.6 109 40.4
Atru.chr13.570 Acer truncatum HOM05D000499 ORTHO05D007471 8.2e-08 61.2 125 36.0
AUR62040075 Chenopodium quinoa HOM05D000499 ORTHO05D007471 8.2e-08 61.2 56 57.1
BolC3t14322H Brassica oleracea HOM05D000499 ORTHO05D007471 1.4e-07 60.5 154 33.8
AUR62033863 Chenopodium quinoa HOM05D000499 ORTHO05D007471 1.4e-07 60.5 56 57.1
Dinv23563 Davidia involucrata HOM05D000370 ORTHO05D001335 1.4e-07 60.5 102 44.1
Hund12053 Selenicereus undatus HOM05D000499 ORTHO05D007471 1.4e-07 60.5 102 40.2
CDE01G0176 Ceratophyllum demersum HOM05D000499 ORTHO05D007471 1.8e-07 60.1 89 49.4
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 1.8e-07 60.1 144 33.3
ClCG05G019250 Citrullus lanatus HOM05D000499 ORTHO05D007471 2.4e-07 59.7 166 30.1
THA.LOC104803394 Tarenaya hassleriana HOM05D000499 ORTHO05D007471 2.4e-07 59.7 115 34.8
HanXRQChr16g0507941 Helianthus annuus HOM05D000499 ORTHO05D007471 3.1e-07 59.3 77 46.8
CiPaw.05G060300 Carya illinoinensis HOM05D000499 ORTHO05D007471 5.3e-07 58.5 111 36.0
VMungo0647G0317 Vigna mungo HOM05D000499 ORTHO05D007471 5.3e-07 58.5 154 33.1
C03p19360 Brassica napus HOM05D000499 ORTHO05D007471 6.9e-07 58.2 154 33.8
Thecc.08G020400 Theobroma cacao HOM05D000499 ORTHO05D007471 6.9e-07 58.2 130 32.3
Cpa.g.sc64.37 Carica papaya HOM05D000499 ORTHO05D007471 9.0e-07 57.8 120 35.0
MD02G1301200 Malus domestica HOM05D000499 ORTHO05D007471 1.2e-06 57.4 113 38.9
Sc02g0006640 Simmondsia chinensis HOM05D000499 ORTHO05D007471 1.5e-06 57.0 75 45.3
Lj5g0012472 Lotus japonicus HOM05D000499 ORTHO05D007471 2.6e-06 56.2 154 33.8
Duzib147G0278 Durio zibethinus HOM05D000499 ORTHO05D007471 4.5e-06 55.5 79 43.0
Lalb_Chr22g0355361 Lupinus albus HOM05D000499 ORTHO05D007471 4.5e-06 55.5 153 31.4
Sabra02G0118600 Salix brachista HOM05D000499 ORTHO05D007471 5.9e-06 55.1 79 44.3
Aa31LG9G12730 Aethionema arabicum HOM05D000499 ORTHO05D007471 7.7e-06 54.7 126 32.5
AT5G42660 Arabidopsis thaliana HOM05D000499 ORTHO05D007471 7.7e-06 54.7 118 33.9
MELO3C003891.2 Cucumis melo HOM05D000499 ORTHO05D007471 7.7e-06 54.7 112 35.7
FAN01G0570 Fragaria x ananassa HOM05D000499 ORTHO05D007471 7.7e-06 54.7 122 35.2
FAN03G3351 Fragaria x ananassa HOM05D000499 ORTHO05D007471 7.7e-06 54.7 122 35.2
Zm00001eb153240 Zea mays HOM05D000499 ORTHO05D007471 7.7e-06 54.7 80 46.2
FAN10G3758 Fragaria x ananassa HOM05D000499 ORTHO05D007471 1.0e-05 54.3 123 34.1


User provided reference genes

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