Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 6.5e-290 1000.0 487 100.0
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 7.4e-278 959.9 487 94.9
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 2.8e-277 958.0 487 94.9
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 4.1e-276 954.1 487 94.9
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.2e-275 952.6 487 94.0
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 5.9e-275 950.3 487 92.8
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 7.7e-275 949.9 487 94.0
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 7.7e-275 949.9 486 94.4
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.3e-274 949.1 487 94.0
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 1.7e-274 948.7 487 93.8
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.2e-274 948.3 487 94.0
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 2.9e-274 948.0 487 93.8
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 5.0e-274 947.2 487 94.3
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.5e-273 944.9 487 94.0
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 5.5e-273 943.7 487 93.6
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 9.4e-273 943.0 484 93.6
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 9.4e-273 943.0 487 93.8
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 1.6e-272 942.2 487 93.2
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.6e-272 941.0 487 92.6
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 6.1e-272 940.3 487 93.6
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 7.9e-272 939.9 483 93.2
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 1.8e-271 938.7 484 93.0
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 6.7e-271 936.8 485 93.0
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 6.7e-271 936.8 487 93.4
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 1.5e-270 935.6 484 92.8
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.5e-270 935.6 487 92.2
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 2.5e-270 934.9 486 93.2
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 5.7e-270 933.7 487 93.0
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 5.7e-270 933.7 486 93.8
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.3e-269 932.6 487 93.0
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 2.2e-269 931.8 487 92.2
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 2.2e-269 931.8 487 92.0
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 3.7e-269 931.0 484 92.4
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 4.8e-269 930.6 487 92.0
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 6.3e-269 930.2 486 91.6
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 8.2e-269 929.9 485 92.4
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 1.4e-268 929.1 487 91.8
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 1.4e-268 929.1 486 92.6
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 1.8e-268 928.7 484 92.1
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 2.4e-268 928.3 487 91.6
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 3.1e-268 927.9 487 91.4
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 4.1e-268 927.5 484 92.4
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 4.1e-268 927.5 480 92.3
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 4.1e-268 927.5 486 92.0
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.3e-268 927.2 486 92.4
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 5.3e-268 927.2 474 94.7
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 9.1e-268 926.4 492 91.5
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 1.2e-267 926.0 487 91.8
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.2e-267 926.0 486 91.8
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.2e-267 926.0 485 91.1
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 2.0e-267 925.2 484 91.3
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 7.7e-267 923.3 484 91.5
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 7.7e-267 923.3 484 91.7
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 1.3e-266 922.5 485 91.1
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 1.3e-266 922.5 486 90.9
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 2.9e-266 921.4 484 91.5
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 2.9e-266 921.4 486 91.4
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 2.9e-266 921.4 486 90.7
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 2.9e-266 921.4 486 90.7
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 5.0e-266 920.6 485 90.7
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 8.5e-266 919.8 484 91.5
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 1.4e-265 919.1 484 91.7
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.4e-265 919.1 485 91.1
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 2.5e-265 918.3 487 91.0
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 3.2e-265 917.9 488 90.8
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 7.2e-265 916.8 486 90.3
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 7.2e-265 916.8 486 90.3
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 7.2e-265 916.8 487 91.0
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.2e-264 916.0 486 90.9
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 1.2e-264 916.0 487 90.6
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 1.2e-264 916.0 487 90.8
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 2.1e-264 915.2 486 91.6
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 2.7e-264 914.8 487 90.8
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 3.6e-264 914.4 487 90.8
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 3.6e-264 914.4 487 90.6
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 3.6e-264 914.4 493 90.5
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 6.1e-264 913.7 487 90.8
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 7.9e-264 913.3 487 90.3
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 7.9e-264 913.3 485 90.1
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.0e-263 912.9 486 90.7
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 1.8e-263 912.1 479 91.0
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 2.3e-263 911.8 487 91.2
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 3.9e-263 911.0 487 90.1
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 6.7e-263 910.2 482 90.9
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 6.7e-263 910.2 476 92.4
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 8.8e-263 909.8 487 90.1
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 8.8e-263 909.8 480 90.4
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 8.8e-263 909.8 487 90.1
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.1e-262 909.4 487 90.6
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 1.5e-262 909.1 486 89.9
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 2.0e-262 908.7 487 90.6
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 3.3e-262 907.9 486 89.9
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 4.4e-262 907.5 453 96.5
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 9.7e-262 906.4 489 90.2
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 1.7e-261 905.6 487 89.9
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.2e-261 905.2 483 90.1
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.1e-260 902.9 486 88.9
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 1.8e-260 902.1 484 90.1
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 2.4e-260 901.7 486 88.7
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.6e-259 899.0 485 89.9
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.0e-259 898.7 483 89.4
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 2.0e-259 898.7 479 90.2
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 2.6e-259 898.3 461 94.1
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 3.5e-259 897.9 461 94.1
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 7.7e-259 896.7 488 89.1
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 1.0e-258 896.3 458 94.8
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.9e-257 892.1 460 92.8
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 2.0e-251 872.1 484 87.2
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.5e-249 865.9 457 90.6
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 6.1e-248 860.5 480 84.2
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.0e-247 858.2 485 87.0
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 4.0e-247 857.8 482 86.9
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 5.4e-244 847.4 436 90.6
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 3.5e-243 844.7 439 90.9
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.1e-241 839.7 408 97.1
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 4.2e-241 837.8 434 89.9
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 6.1e-240 833.9 407 96.3
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 8.0e-240 833.6 458 84.7
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 8.3e-237 823.5 406 95.1
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 3.1e-236 821.6 405 95.1
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 1.2e-235 819.7 407 94.1
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 6.8e-231 803.9 486 81.5
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 2.9e-229 798.5 433 85.5
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 5.6e-225 784.3 384 96.6
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 4.4e-222 774.6 421 83.6
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 3.5e-219 765.0 392 92.9
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 7.8e-219 763.8 436 81.2
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 7.8e-219 763.8 427 81.5
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 5.6e-217 757.7 393 93.1
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 3.9e-210 734.9 481 77.1
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 8.1e-192 674.1 369 87.0
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.8e-191 672.9 346 92.2
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.9e-186 655.2 486 70.4
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 1.1e-183 647.1 395 73.7
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 2.2e-181 639.4 315 96.2
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.1e-178 628.2 487 68.4
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.4e-177 624.4 486 67.9
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.1e-175 619.0 486 67.7
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 2.5e-169 599.4 332 88.0
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.2e-149 533.1 279 90.0
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.1e-143 512.7 351 74.1
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 2.7e-126 456.4 292 73.6
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 5.6e-116 422.2 203 98.0
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 4.0e-98 362.8 191 89.5
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.0e-97 360.5 180 91.1
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.4e-95 354.4 171 99.4
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 6.0e-94 349.0 172 95.9
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.1e-90 338.2 485 44.1
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 2.3e-77 293.9 146 93.8
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 2.1e-70 270.8 146 89.0
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 4.3e-68 263.1 164 81.1
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 1.2e-65 255.0 127 96.1
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 5.5e-63 246.1 147 84.4
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 1.2e-62 245.0 127 86.6
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 5.8e-57 226.1 127 87.4
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.7e-54 217.2 284 41.5
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 1.9e-52 211.1 100 97.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.8e-50 204.5 102 94.1
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 4.5e-41 173.3 108 77.8
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 9.7e-36 155.6 102 76.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 1.7e-35 154.8 77 96.1
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 1.7e-35 154.8 77 96.1
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 2.3e-29 134.4 69 95.7
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.2e-29 133.3 71 90.1
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 2.6e-28 131.0 197 38.1
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.2e-27 127.9 68 88.2
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.8e-27 126.7 65 92.3
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.8e-27 126.7 65 92.3
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.2e-25 122.1 66 87.9
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.6e-25 120.9 66 86.4
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.7e-22 110.9 83 66.3
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.8e-21 108.2 67 70.1
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 8.8e-21 105.9 67 73.1
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 4.5e-17 93.6 168 36.9
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 6.1e-14 83.2 71 59.2
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 1.5e-12 78.6 72 55.6
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 3.4e-12 77.4 72 55.6
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.8e-11 73.6 61 75.4
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 8.3e-11 72.8 61 63.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 9.1e-10 69.3 61 59.0
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 8.0e-06 56.2 38 68.4


User provided reference genes

Program Settings